; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G012160 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G012160
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionU2 small nuclear ribonucleoprotein B
Genome locationchr02:15706553..15708455
RNA-Seq ExpressionLsi02G012160
SyntenyLsi02G012160
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005686 - U2 snRNP (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137370.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus]4.7e-9797.4Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS
        ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDC+AKADGSFVPREKKKKQEEKAEKKRRAEE HQS MPNGTT ENGGS
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS

Query:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        NATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

XP_008457301.1 PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo]2.7e-9797.92Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS
        ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADG+FVPREKKKKQEEKAEKKRRAEEAHQS MPNGTT ENGGS
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS

Query:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        NATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

XP_022949507.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata]8.8e-9696.35Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS
        ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAE+KRR EE HQS MPNG TAENGGS
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS

Query:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        NATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

XP_023525708.1 U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. pepo]2.0e-9595.83Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS
        ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAE+KRR +E HQS MPNG TAENGGS
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS

Query:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        NATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

XP_038893561.1 U2 small nuclear ribonucleoprotein B'' 2 [Benincasa hispida]8.8e-9697.92Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS
        ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQS MPNGTT  NGGS
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS

Query:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        NATFRHANP+AAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

TrEMBL top hitse value%identityAlignment
A0A0A0LPT7 Uncharacterized protein2.3e-9797.4Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS
        ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDC+AKADGSFVPREKKKKQEEKAEKKRRAEE HQS MPNGTT ENGGS
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS

Query:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        NATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

A0A1S3C564 U2 small nuclear ribonucleoprotein B'' 2-like1.3e-9797.92Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS
        ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADG+FVPREKKKKQEEKAEKKRRAEEAHQS MPNGTT ENGGS
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS

Query:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        NATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

A0A5D3BF51 U2 small nuclear ribonucleoprotein B'' 2-like1.3e-9797.92Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS
        ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADG+FVPREKKKKQEEKAEKKRRAEEAHQS MPNGTT ENGGS
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS

Query:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        NATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

A0A6J1GC84 U2 small nuclear ribonucleoprotein B'' 2-like4.3e-9696.35Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS
        ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAE+KRR EE HQS MPNG TAENGGS
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS

Query:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        NATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

A0A6J1KA04 U2 small nuclear ribonucleoprotein B'' 2-like4.3e-9696.35Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS
        ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAE+KRR EE HQS MPNG TAENGGS
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS

Query:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        NATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  NATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

SwissProt top hitse value%identityAlignment
A2Y0J7 U1 small nuclear ribonucleoprotein A3.1e-5155.72Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQ-SVMPNGTTAENGG
        ILDV+A KT + +GQAWV F +V +A+ A++ MQ+FPF+ KPMRIQYAKTKSD +AKADG+FVPRE++K+ +EK EKK++ E+ H  S +  G  A  G 
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQ-SVMPNGTTAENGG

Query:  SNATFRHANPSAAE--------ATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAK
          A      P A            PNNILF++NLPHET+ MMLQ+LF QYPGF+EVRM+EAKPGIAFVE+ D+ Q++ AM  LQGFKI   + M IS+AK
Subjt:  SNATFRHANPSAAE--------ATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAK

Query:  K
        K
Subjt:  K

B8AM21 U2 small nuclear ribonucleoprotein B''3.7e-6571.65Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEK-AEKKRRAEEAHQSVMPNGTTAENG-
        ILDVVALKTP+LRGQAWV FSE+TAA+NA R +Q F FY K MR+QYAKTKSDC+A  DGS  P+EK+KKQEEK AEKKRRAEEA QS  PN     NG 
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEK-AEKKRRAEEAHQSVMPNGTTAENG-

Query:  GSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        G  A+          A PNNILFI+NLP ET+SMMLQ+LFQQYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Subjt:  GSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

O22922 U2 small nuclear ribonucleoprotein B''3.6e-6869.39Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSV---MPNGTTAEN
        ILDVVALKTP+LRGQAWV FSEVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+G+FVP++KK+KQEEK E+KR   +   +      NG +A N
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSV---MPNGTTAEN

Query:  GGSNATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        G    +F+   PS  E   PNNILFI+NLPHET+SMMLQ+LF+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Subjt:  GGSNATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

Q10MR0 U2 small nuclear ribonucleoprotein B''8.3e-6571.13Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEK-AEKKRRAEEAHQSVMPNGTTAENG-
        ILDVVALKTP+LRGQAWV FSE+TAA+NA R +Q F FY K MR+QYAKT+SDC+A  DGS  P+EK+KKQEEK AEKKRRAEEA QS  PN     NG 
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEK-AEKKRRAEEAHQSVMPNGTTAENG-

Query:  GSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        G  A+          A PNNILFI+NLP ET+SMMLQ+LFQQYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Subjt:  GSNATFRHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

Q8H1S6 U2 small nuclear ribonucleoprotein B'' 24.9e-7375.13Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS
        +LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD V KA+GSFVP+EKK KQEEK E+KR AEE  Q  MPNG T +NG  
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS

Query:  NATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
           F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Subjt:  NATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

Arabidopsis top hitse value%identityAlignment
AT1G06960.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.5e-7475.13Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS
        +LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD V KA+GSFVP+EKK KQEEK E+KR AEE  Q  MPNG T +NG  
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS

Query:  NATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
           F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Subjt:  NATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

AT1G06960.2 RNA-binding (RRM/RBD/RNP motifs) family protein3.8e-7374.61Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS
        +LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD V KA+GSFVP+EKK KQEEK E+KR AEE  Q  MPNG T +NG  
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS

Query:  NATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
                PS  +   PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Subjt:  NATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

AT1G06960.3 RNA-binding (RRM/RBD/RNP motifs) family protein3.5e-7475.13Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS
        +LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD V KA+GSFVP+EKK KQEEK E+KR AEE  Q  MPNG T +NG  
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGS

Query:  NATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
           F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Subjt:  NATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

AT2G30260.1 U2 small nuclear ribonucleoprotein B2.6e-6969.39Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSV---MPNGTTAEN
        ILDVVALKTP+LRGQAWV FSEVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+G+FVP++KK+KQEEK E+KR   +   +      NG +A N
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSV---MPNGTTAEN

Query:  GGSNATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        G    +F+   PS  E   PNNILFI+NLPHET+SMMLQ+LF+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Subjt:  GGSNATFRHANPSAAEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

AT2G47580.1 spliceosomal protein U1A1.2e-5054.9Show/hide
Query:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVM---------PN
        IL+++A KT + +GQAWV F    +AS A+ +M NFPFY+K MRIQYAKTKSD VAKADG+FVPREK+K+ EEK   K++ ++ H S           P 
Subjt:  ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVM---------PN

Query:  GTTAENGGSNATF---RHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAIS
           A    S   +      N   A A PNNILF++NLPHET+ M+LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M I+
Subjt:  GTTAENGGSNATF---RHANPSAAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAIS

Query:  FAKK
        +AKK
Subjt:  FAKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATCCTTGATGTTGTTGCCTTGAAAACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCC
ATTCTATGAAAAACCCATGCGAATTCAATATGCCAAAACCAAATCCGATTGTGTTGCTAAAGCTGACGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAA
AAGCTGAGAAAAAACGACGTGCTGAAGAAGCACACCAATCTGTGATGCCTAATGGAACAACTGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGT
GCTGCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCACATGAAACCTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGT
CCGGATGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGACGATGTTCAATCCTCTATGGCAATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATC
CCATGGCTATCTCTTTTGCAAAGAAG
mRNA sequenceShow/hide mRNA sequence
ATCCTTGATGTTGTTGCCTTGAAAACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCC
ATTCTATGAAAAACCCATGCGAATTCAATATGCCAAAACCAAATCCGATTGTGTTGCTAAAGCTGACGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAA
AAGCTGAGAAAAAACGACGTGCTGAAGAAGCACACCAATCTGTGATGCCTAATGGAACAACTGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGT
GCTGCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCACATGAAACCTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGT
CCGGATGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGACGATGTTCAATCCTCTATGGCAATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATC
CCATGGCTATCTCTTTTGCAAAGAAG
Protein sequenceShow/hide protein sequence
ILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAEKKRRAEEAHQSVMPNGTTAENGGSNATFRHANPS
AAEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK