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Lsi02G012170 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G012170
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionU2 small nuclear ribonucleoprotein B''
Genome locationchr02:15708618..15709056
RNA-Seq ExpressionLsi02G012170
SyntenyLsi02G012170
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8018746.1 hypothetical protein BT93_H3600 [Corymbia citriodora subsp. variegata]4.2e-04100Show/hide
Query:  MLSGDIPPNQTIYIKNLNEKVKKE
        MLSGDIPPNQTIYIKNLNEKVKKE
Subjt:  MLSGDIPPNQTIYIKNLNEKVKKE
PKA54488.1 U2 small nuclear ribonucleoprotein B'' [Apostasia shenzhenica]4.2e-04100Show/hide
Query:  MLSGDIPPNQTIYIKNLNEKVKKE
        MLSGDIPPNQTIYIKNLNEKVKKE
Subjt:  MLSGDIPPNQTIYIKNLNEKVKKE
XP_010256991.1 PREDICTED: U2 small nuclear ribonucleoprotein B'' [Nelumbo nucifera]4.2e-04100Show/hide
Query:  MLSGDIPPNQTIYIKNLNEKVKKE
        MLSGDIPPNQTIYIKNLNEKVKKE
Subjt:  MLSGDIPPNQTIYIKNLNEKVKKE
XP_015058779.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 isoform X1 [Solanum pennellii]4.2e-0496Show/hide
Query:  MLSGDIPPNQTIYIKNLNEKVKKEV
        ML+GDIPPNQTIYIKNLNEKVKKEV
Subjt:  MLSGDIPPNQTIYIKNLNEKVKKEV
XP_038893561.1 U2 small nuclear ribonucleoprotein B'' 2 [Benincasa hispida]4.2e-04100Show/hide
Query:  MLSGDIPPNQTIYIKNLNEKVKKE
        MLSGDIPPNQTIYIKNLNEKVKKE
Subjt:  MLSGDIPPNQTIYIKNLNEKVKKE
TrEMBL top hitse value%identityAlignment
A0A059DAQ6 Uncharacterized protein2.0e-04100Show/hide
Query:  MLSGDIPPNQTIYIKNLNEKVKKE
        MLSGDIPPNQTIYIKNLNEKVKKE
Subjt:  MLSGDIPPNQTIYIKNLNEKVKKE
A0A199W8T8 U2 small nuclear ribonucleoprotein B2.0e-04100Show/hide
Query:  MLSGDIPPNQTIYIKNLNEKVKKE
        MLSGDIPPNQTIYIKNLNEKVKKE
Subjt:  MLSGDIPPNQTIYIKNLNEKVKKE
A0A1U8A5A8 U2 small nuclear ribonucleoprotein B''2.0e-04100Show/hide
Query:  MLSGDIPPNQTIYIKNLNEKVKKE
        MLSGDIPPNQTIYIKNLNEKVKKE
Subjt:  MLSGDIPPNQTIYIKNLNEKVKKE
A0A5D3BF51 U2 small nuclear ribonucleoprotein B'' 2-like2.0e-04100Show/hide
Query:  MLSGDIPPNQTIYIKNLNEKVKKE
        MLSGDIPPNQTIYIKNLNEKVKKE
Subjt:  MLSGDIPPNQTIYIKNLNEKVKKE
A0A6A4PWI7 Putative RNA recognition motif domain-containing protein2.0e-04100Show/hide
Query:  MLSGDIPPNQTIYIKNLNEKVKKE
        MLSGDIPPNQTIYIKNLNEKVKKE
Subjt:  MLSGDIPPNQTIYIKNLNEKVKKE
SwissProt top hitse value%identityAlignment
B8AM21 U2 small nuclear ribonucleoprotein B''2.7e-0687.5Show/hide
Query:  MLSGDIPPNQTIYIKNLNEKVKKE
        MLSGDIPPNQT+Y++NLNEKVKKE
Subjt:  MLSGDIPPNQTIYIKNLNEKVKKE
O22922 U2 small nuclear ribonucleoprotein B''1.5e-0475Show/hide
Query:  MLSGDIPPNQTIYIKNLNEKVKKE
        ML+ DIPPNQ+IYI+NLNE++KKE
Subjt:  MLSGDIPPNQTIYIKNLNEKVKKE
Q10MR0 U2 small nuclear ribonucleoprotein B''2.7e-0687.5Show/hide
Query:  MLSGDIPPNQTIYIKNLNEKVKKE
        MLSGDIPPNQT+Y++NLNEKVKKE
Subjt:  MLSGDIPPNQTIYIKNLNEKVKKE
Q8H1S6 U2 small nuclear ribonucleoprotein B'' 21.5e-0475Show/hide
Query:  MLSGDIPPNQTIYIKNLNEKVKKE
        ML+ DIPPNQ+IYIK++NEK+KKE
Subjt:  MLSGDIPPNQTIYIKNLNEKVKKE
Arabidopsis top hitse value%identityAlignment
AT1G06960.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-0575Show/hide
Query:  MLSGDIPPNQTIYIKNLNEKVKKE
        ML+ DIPPNQ+IYIK++NEK+KKE
Subjt:  MLSGDIPPNQTIYIKNLNEKVKKE
AT1G06960.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-0575Show/hide
Query:  MLSGDIPPNQTIYIKNLNEKVKKE
        ML+ DIPPNQ+IYIK++NEK+KKE
Subjt:  MLSGDIPPNQTIYIKNLNEKVKKE
AT2G30260.1 U2 small nuclear ribonucleoprotein B1.1e-0575Show/hide
Query:  MLSGDIPPNQTIYIKNLNEKVKKE
        ML+ DIPPNQ+IYI+NLNE++KKE
Subjt:  MLSGDIPPNQTIYIKNLNEKVKKE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATCCGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAATGAGAAGGTCAAGAAAGAAGTTTACGGCTACTTGGTTTACCCATTTCCCGTAGCATT
TTGGATTTTGTTTACTATTTTGGTTGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTATCCGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAATGAGAAGGTCAAGAAAGAAGTTTACGGCTACTTGGTTTACCCATTTCCCGTAGCATT
TTGGATTTTGTTTACTATTTTGGTTGCTTAG
Protein sequenceShow/hide protein sequence
MLSGDIPPNQTIYIKNLNEKVKKEVYGYLVYPFPVAFWILFTILVA