; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G012350 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G012350
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNA binding (RRM/RBD/RNP motifs) family protein
Genome locationchr02:16224286..16226144
RNA-Seq ExpressionLsi02G012350
SyntenyLsi02G012350
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0030014 - CCR4-NOT complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR039780 - CCR4-NOT transcription complex subunit 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463873.1 PREDICTED: uncharacterized protein LOC103501902 isoform X1 [Cucumis melo]4.4e-4081.98Show/hide
Query:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS
        LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT   YITYSKEEE VRCIQNVHQFVLEGKPL           + L + PCTNPDCLYLHEVGSQEDS
Subjt:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS

Query:  FTKDEIISAYT
        FTKDEIISAYT
Subjt:  FTKDEIISAYT

XP_022146241.1 uncharacterized protein LOC111015505 isoform X1 [Momordica charantia]4.4e-4081.98Show/hide
Query:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS
        LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT   YITYSKEEE VRCIQNVHQFVLEGKPL           + L + PCTNPDCLYLHEVGSQEDS
Subjt:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS

Query:  FTKDEIISAYT
        FTKDEIISAYT
Subjt:  FTKDEIISAYT

XP_022146247.1 uncharacterized protein LOC111015505 isoform X2 [Momordica charantia]4.4e-4081.98Show/hide
Query:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS
        LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT   YITYSKEEE VRCIQNVHQFVLEGKPL           + L + PCTNPDCLYLHEVGSQEDS
Subjt:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS

Query:  FTKDEIISAYT
        FTKDEIISAYT
Subjt:  FTKDEIISAYT

XP_038901784.1 uncharacterized protein LOC120088502 isoform X2 [Benincasa hispida]4.4e-4081.98Show/hide
Query:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS
        LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT   YITYSKEEE VRCIQNVHQFVLEGKPL           + L + PCTNPDCLYLHEVGSQEDS
Subjt:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS

Query:  FTKDEIISAYT
        FTKDEIISAYT
Subjt:  FTKDEIISAYT

XP_038901785.1 uncharacterized protein LOC120088502 isoform X3 [Benincasa hispida]4.4e-4081.98Show/hide
Query:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS
        LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT   YITYSKEEE VRCIQNVHQFVLEGKPL           + L + PCTNPDCLYLHEVGSQEDS
Subjt:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS

Query:  FTKDEIISAYT
        FTKDEIISAYT
Subjt:  FTKDEIISAYT

TrEMBL top hitse value%identityAlignment
A0A1S3CK71 uncharacterized protein LOC103501902 isoform X22.1e-4081.98Show/hide
Query:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS
        LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT   YITYSKEEE VRCIQNVHQFVLEGKPL           + L + PCTNPDCLYLHEVGSQEDS
Subjt:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS

Query:  FTKDEIISAYT
        FTKDEIISAYT
Subjt:  FTKDEIISAYT

A0A1S3CK79 uncharacterized protein LOC103501902 isoform X12.1e-4081.98Show/hide
Query:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS
        LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT   YITYSKEEE VRCIQNVHQFVLEGKPL           + L + PCTNPDCLYLHEVGSQEDS
Subjt:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS

Query:  FTKDEIISAYT
        FTKDEIISAYT
Subjt:  FTKDEIISAYT

A0A5A7SZD0 Uncharacterized protein2.1e-4081.98Show/hide
Query:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS
        LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT   YITYSKEEE VRCIQNVHQFVLEGKPL           + L + PCTNPDCLYLHEVGSQEDS
Subjt:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS

Query:  FTKDEIISAYT
        FTKDEIISAYT
Subjt:  FTKDEIISAYT

A0A6J1CXK4 uncharacterized protein LOC111015505 isoform X12.1e-4081.98Show/hide
Query:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS
        LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT   YITYSKEEE VRCIQNVHQFVLEGKPL           + L + PCTNPDCLYLHEVGSQEDS
Subjt:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS

Query:  FTKDEIISAYT
        FTKDEIISAYT
Subjt:  FTKDEIISAYT

A0A6J1CZ27 uncharacterized protein LOC111015505 isoform X22.1e-4081.98Show/hide
Query:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS
        LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT   YITYSKEEE VRCIQNVHQFVLEGKPL           + L + PCTNPDCLYLHEVGSQEDS
Subjt:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS

Query:  FTKDEIISAYT
        FTKDEIISAYT
Subjt:  FTKDEIISAYT

SwissProt top hitse value%identityAlignment
O95628 CCR4-NOT transcription complex subunit 49.6e-1436.19Show/hide
Query:  QLLQRREYFGQYGKVLKVSMSRTATGVIQQFPN-NTYITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDSF
        ++L+R EYFG++GK+ KV ++ + +    Q P+ + Y+TY + E+ +R IQ V+  V++G+ L  +       +  L +  C  PDC+YLHE+G +  SF
Subjt:  QLLQRREYFGQYGKVLKVSMSRTATGVIQQFPN-NTYITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDSF

Query:  TKDEI
        TK+E+
Subjt:  TKDEI

P34909 General negative regulator of transcription subunit 42.2e-1032.43Show/hide
Query:  LQRREYFGQYGKVLKVSMSR--------TATGVIQQFPN-NTYITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVG
        L+  +YFGQYGK+ K+ ++R        T+       P    YIT+  +++  RCI  V    ++G+ +          +S L   PC NP+C++LHE G
Subjt:  LQRREYFGQYGKVLKVSMSR--------TATGVIQQFPN-NTYITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVG

Query:  SQEDSFTKDEI
         + DSF K E+
Subjt:  SQEDSFTKDEI

Q09818 Putative general negative regulator of transcription C16C9.04c1.9e-1435.51Show/hide
Query:  VQLLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTYITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDSF
        + +L+  EYFGQYGK++K+++++ A           YITY ++E+  R I  +   V +G+ L  +       TS L +  C NP C+YLHE G + DS+
Subjt:  VQLLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTYITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDSF

Query:  TKDEIIS
        TK+++ S
Subjt:  TKDEIIS

Q8BT14 CCR4-NOT transcription complex subunit 49.6e-1436.19Show/hide
Query:  QLLQRREYFGQYGKVLKVSMSRTATGVIQQFPN-NTYITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDSF
        ++L+R EYFG++GK+ KV ++ + +    Q P+ + Y+TY + E+ +R IQ V+  V++G+ L  +       +  L +  C  PDC+YLHE+G +  SF
Subjt:  QLLQRREYFGQYGKVLKVSMSRTATGVIQQFPN-NTYITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDSF

Query:  TKDEI
        TK+E+
Subjt:  TKDEI

Arabidopsis top hitse value%identityAlignment
AT2G28540.1 RNA binding (RRM/RBD/RNP motifs) family protein1.1e-3360.91Show/hide
Query:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS
        + QRREYFGQYGKV+KV+MSRTA G +QQFPNNT   YITYSKEEE +RCI++VH F+L+G+ L           + L + PC+N +CLYLHE+G+QEDS
Subjt:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS

Query:  FTKDEIISAY
        F+KDE ISA+
Subjt:  FTKDEIISAY

AT2G28540.2 RNA binding (RRM/RBD/RNP motifs) family protein1.1e-3360.91Show/hide
Query:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS
        + QRREYFGQYGKV+KV+MSRTA G +QQFPNNT   YITYSKEEE +RCI++VH F+L+G+ L           + L + PC+N +CLYLHE+G+QEDS
Subjt:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS

Query:  FTKDEIISAY
        F+KDE ISA+
Subjt:  FTKDEIISAY

AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein3.7e-3770.27Show/hide
Query:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS
        LLQR+EYFGQYGKVLKVSMSRTATG+IQQFPNNT   YITY KEEE +RCIQ+VH F+L+GK L           + L +  C N DCLYLHEVGSQEDS
Subjt:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS

Query:  FTKDEIISAYT
        FTKDEIISA+T
Subjt:  FTKDEIISAYT

AT5G60170.1 RNA binding (RRM/RBD/RNP motifs) family protein2.6e-3872.07Show/hide
Query:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS
        LLQ +EYFGQYGKVLKVSMSRTA+GVIQQFPNNT   YITY KEEE VRCIQ VH F+L+GKPL           + L +  C NPDCLYLHEVGSQ+DS
Subjt:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS

Query:  FTKDEIISAYT
        FTKDEIISAYT
Subjt:  FTKDEIISAYT

AT5G60170.2 RNA binding (RRM/RBD/RNP motifs) family protein2.6e-3872.07Show/hide
Query:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS
        LLQ +EYFGQYGKVLKVSMSRTA+GVIQQFPNNT   YITY KEEE VRCIQ VH F+L+GKPL           + L +  C NPDCLYLHEVGSQ+DS
Subjt:  LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNT---YITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQEDS

Query:  FTKDEIISAYT
        FTKDEIISAYT
Subjt:  FTKDEIISAYT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATGGTGGAAGTAATGGATGCCCTCTTATCATCCCTTGTGCAGCTTCTTCAGCGTAGAGAATACTTTGGTCAATATGGGAAAGTTCTAAAAGTGTCGATGTCCCG
TACAGCAACTGGAGTCATTCAACAATTTCCTAATAATACATATATTACATACTCAAAAGAGGAGGAAGTTGTTCGATGTATCCAAAATGTACATCAGTTTGTCTTGGAGG
GCAAACCATTAAGTTTTACCAATGAAAATTTCACAACTTCTACATCTGCTTTGGATCATAATCCTTGCACCAACCCTGATTGTTTGTATTTACACGAGGTTGGTTCTCAA
GAAGATAGTTTCACAAAAGATGAAATCATTTCAGCATACACA
mRNA sequenceShow/hide mRNA sequence
ATGGTTATGGTGGAAGTAATGGATGCCCTCTTATCATCCCTTGTGCAGCTTCTTCAGCGTAGAGAATACTTTGGTCAATATGGGAAAGTTCTAAAAGTGTCGATGTCCCG
TACAGCAACTGGAGTCATTCAACAATTTCCTAATAATACATATATTACATACTCAAAAGAGGAGGAAGTTGTTCGATGTATCCAAAATGTACATCAGTTTGTCTTGGAGG
GCAAACCATTAAGTTTTACCAATGAAAATTTCACAACTTCTACATCTGCTTTGGATCATAATCCTTGCACCAACCCTGATTGTTTGTATTTACACGAGGTTGGTTCTCAA
GAAGATAGTTTCACAAAAGATGAAATCATTTCAGCATACACA
Protein sequenceShow/hide protein sequence
MVMVEVMDALLSSLVQLLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTYITYSKEEEVVRCIQNVHQFVLEGKPLSFTNENFTTSTSALDHNPCTNPDCLYLHEVGSQ
EDSFTKDEIISAYT