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Lsi02G012400 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G012400
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCCT domain-containing protein
Genome locationchr02:16311843..16313994
RNA-Seq ExpressionLsi02G012400
SyntenyLsi02G012400
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR010402 - CCT domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN65847.1 hypothetical protein Csa_023240 [Cucumis sativus]2.2e-4669.81Show/hide
Query:  MMKSPKKE--DEQQV---PNSIWDDDFKAFFELTDEENPPPPM-QPDY---RFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSL-SNDPT
        ++KSPKKE   EQQV   P+SIW+DDF+AFF+LT EE PPPP+  PDY   + H + VME+  K ++LNLNLN +EVLEAWS RGSLWAAASS  SND T
Subjt:  MMKSPKKE--DEQQV---PNSIWDDDFKAFFELTDEENPPPPM-QPDY---RFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSL-SNDPT

Query:  HDPYMGEVP--RMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVKT
        H PYMGEVP  RMEEER RRV RYKEKR  R+F KKIRYQVRKLNA++RPRIKGRFVKT
Subjt:  HDPYMGEVP--RMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVKT

XP_023520167.1 zinc finger protein CONSTANS-LIKE 6 [Cucurbita pepo subsp. pepo]1.9e-4255.72Show/hide
Query:  MMKSPKK---EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDY--------------------------------------------------RFHDH
        ++KSPKK   E+EQ+VPNSIW DDFKAFFEL++EE  P   Q ++                                                   F   
Subjt:  MMKSPKK---EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDY--------------------------------------------------RFHDH

Query:  GVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVKT
        GVMESKKK ASLNLNLN +EV EAWSGRGSLWAA  S  ++PTH+ YMGEVPRMEEERTRRV+RY+EKR TRLFS KIRYQVRKLNA+KRPRIKGRFVKT
Subjt:  GVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVKT

Query:  V
        V
Subjt:  V

XP_038893944.1 zinc finger protein CONSTANS-LIKE 16 isoform X1 [Benincasa hispida]4.0e-5683.33Show/hide
Query:  MMKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPP--MQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLW-AAASSLSNDPTHDPYMGE
        ++KSPKKEDEQQVPNSIW+DDFKAFFELTDEENPP P   QPDY FHD   ME+K K  SLNLNLN +EVLEAWS RGSLW AAASSL++D THDPYMGE
Subjt:  MMKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPP--MQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLW-AAASSLSNDPTHDPYMGE

Query:  VPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK
        VPRMEEERTRRV+RYKEKR+TRLFSKKIRYQVRKLNAEKRPRIK
Subjt:  VPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIK

XP_038893945.1 zinc finger protein CONSTANS-LIKE 7 isoform X2 [Benincasa hispida]1.8e-5682.31Show/hide
Query:  MMKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPP--MQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLW-AAASSLSNDPTHDPYMGE
        ++KSPKKEDEQQVPNSIW+DDFKAFFELTDEENPP P   QPDY FHD   ME+K K  SLNLNLN +EVLEAWS RGSLW AAASSL++D THDPYMGE
Subjt:  MMKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPP--MQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLW-AAASSLSNDPTHDPYMGE

Query:  VPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRF
        VPRMEEERTRRV+RYKEKR+TRLFSKKIRYQVRKLNAEKRPRIK  F
Subjt:  VPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRF

XP_038893946.1 zinc finger protein CONSTANS-LIKE 7 isoform X3 [Benincasa hispida]9.3e-6184.21Show/hide
Query:  MMKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPP--MQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLW-AAASSLSNDPTHDPYMGE
        ++KSPKKEDEQQVPNSIW+DDFKAFFELTDEENPP P   QPDY FHD   ME+K K  SLNLNLN +EVLEAWS RGSLW AAASSL++D THDPYMGE
Subjt:  MMKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPP--MQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLW-AAASSLSNDPTHDPYMGE

Query:  VPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTVE
        VPRMEEERTRRV+RYKEKR+TRLFSKKIRYQVRKLNAEKRPRIKGRFVKTVE
Subjt:  VPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTVE

TrEMBL top hitse value%identityAlignment
A0A0A0LYC0 CCT domain-containing protein1.1e-4669.81Show/hide
Query:  MMKSPKKE--DEQQV---PNSIWDDDFKAFFELTDEENPPPPM-QPDY---RFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSL-SNDPT
        ++KSPKKE   EQQV   P+SIW+DDF+AFF+LT EE PPPP+  PDY   + H + VME+  K ++LNLNLN +EVLEAWS RGSLWAAASS  SND T
Subjt:  MMKSPKKE--DEQQV---PNSIWDDDFKAFFELTDEENPPPPM-QPDY---RFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSL-SNDPT

Query:  HDPYMGEVP--RMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVKT
        H PYMGEVP  RMEEER RRV RYKEKR  R+F KKIRYQVRKLNA++RPRIKGRFVKT
Subjt:  HDPYMGEVP--RMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVKT

A0A2N9FHK6 CCT domain-containing protein1.7e-2857.05Show/hide
Query:  PKK--EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRME
        PK+  EDE +    ++++  + FFE  +EE+       D +  + GV++  +  ASLNLNLN +EVL+AWS RGSLWA  SS S   ++  YMGEVP ME
Subjt:  PKK--EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRME

Query:  EERTRR---VMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTV
        EERTRR   V+RYKEKR TRLFSKKIRYQVRKLNA+KRPR+KGRFVK V
Subjt:  EERTRR---VMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTV

A0A6J1DMX8 zinc finger protein CONSTANS-LIKE 6 isoform X12.2e-3151.03Show/hide
Query:  MKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHG-----------------------VMESKKKAA---------------------
        +KSP KE+EQ+VPN     DF+AF E   ++ PPPP + +  F  +G                       ++ + ++AA                     
Subjt:  MKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHG-----------------------VMESKKKAA---------------------

Query:  -SLNLNLNCDEVLEAWSGRGSLWAAA--SSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTV
         SL LNLN +EVLEAWSGRGSLWAAA  SSLSN  T+  YMGEVPR+EEER RRV+RYKEKR+ RLFS KIRYQVRKLNAEKR RIKGRFVKTV
Subjt:  -SLNLNLNCDEVLEAWSGRGSLWAAA--SSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTV

A0A6J1HJ00 zinc finger protein CONSTANS-LIKE 61.4e-4154.19Show/hide
Query:  MMKSPKK---EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDY----------------------------------------------------RFH
        ++KSPKK   E+EQ+VPNSIW DDFKAFFEL++EE  P   Q ++                                                     F 
Subjt:  MMKSPKK---EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDY----------------------------------------------------RFH

Query:  DHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFV
          GVM+SKKK ASLNLNLN +EV EAWSGRGSLWA   S  ++PTH+ YMGEVPRMEEERTRRV+RY+EKR TRLFS KIRYQVRKLNA+KRPRIKGRFV
Subjt:  DHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFV

Query:  KTV
        KTV
Subjt:  KTV

A0A6J1I4F9 zinc finger protein CONSTANS-LIKE 66.3e-3953.47Show/hide
Query:  MMKSPKK--EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDY----------------------------------------------------RFHD
        ++K  KK  E+EQ+VPNSI  DDFKAFFEL++EE  P   Q ++                                                     F  
Subjt:  MMKSPKK--EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDY----------------------------------------------------RFHD

Query:  HGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVK
         GVM+SKKK ASLNLNLN +EV EAWSGRGSLWAA  S  ++PTH+ YMGEVPRMEEERTRRV+RY+EKR TRLFS KIRYQVRKLNA+KRPRIKGRFVK
Subjt:  HGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVK

Query:  TV
        TV
Subjt:  TV

SwissProt top hitse value%identityAlignment
Q8LG76 Zinc finger protein CONSTANS-LIKE 65.2e-1444.72Show/hide
Query:  GVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAA--ASSLSND----PTHDPYMGEVPRMEEE------------------RTRRVMRYKEKRNTRLFSK
        G ++ +KK  +L L L+ + V+  W G+G  W A   S +  D    PTH   MGE                         R  RV RY+EKR TRLFSK
Subjt:  GVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAA--ASSLSND----PTHDPYMGEVPRMEEE------------------RTRRVMRYKEKRNTRLFSK

Query:  KIRYQVRKLNAEKRPRIKGRFVK
        KIRY+VRKLNAEKRPR+KGRFVK
Subjt:  KIRYQVRKLNAEKRPRIKGRFVK

Q8RWD0 Zinc finger protein CONSTANS-LIKE 165.7e-1349.09Show/hide
Query:  LNLNLNCDEVLEAWSGRG---------------SLWAAASSLSN--DPTHD-PYMGE-VPRM---EEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEK
        L L LN D V+  W G+G               S W A S + N  + TH   Y+G  +P     +  R  RV RY+EKR TRLFSKKIRY+VRKLNAEK
Subjt:  LNLNLNCDEVLEAWSGRG---------------SLWAAASSLSN--DPTHD-PYMGE-VPRM---EEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEK

Query:  RPRIKGRFVK
        RPR+KGRFVK
Subjt:  RPRIKGRFVK

Q9C9A9 Zinc finger protein CONSTANS-LIKE 71.5e-1337.89Show/hide
Query:  EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAA---SSLSNDPTHDPYM---------
        ++E +V   I   D K   +  +EE          +  D      K +  SL L L+   V+ AW   GS W        +    T  P++         
Subjt:  EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAA---SSLSNDPTHDPYM---------

Query:  --GEVPRM--------EEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVK
          G V R         + ER  RV+RYKEKR TRLFSKKIRY+VRKLNAE+RPRIKGRFVK
Subjt:  --GEVPRM--------EEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVK

Q9LU68 Protein CHLOROPLAST IMPORT APPARATUS 28.3e-1246.94Show/hide
Query:  ESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEE--RTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVK
        E+  K     L L+ D VLEAWS + S +      S     +  + ++    +   R   V+RYKEKR TRLFSKKIRYQVRKLNA++RPR+KGRFV+
Subjt:  ESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEE--RTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVK

Q9M9B3 Zinc finger protein CONSTANS-LIKE 81.2e-1047.62Show/hide
Query:  LNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVK
        LN + V+ AW  + S     ++ S+     P + E  R+  ER  RV RY++KR  RLF KKIRY+VRK+NA+KRPR+KGRFV+
Subjt:  LNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVK

Arabidopsis top hitse value%identityAlignment
AT1G07050.1 CCT motif family protein5.0e-2045.52Show/hide
Query:  WDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSG-RGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRR----VMRY
        W++D        ++ +        + F ++   + + K   L LNLN  EV++AWS  +  LW   S+L N      Y GEVP +EE+R  R    V+RY
Subjt:  WDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSG-RGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRR----VMRY

Query:  KEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVK
        KEKR +RLFSKKIRYQVRKLNA+KRPR KGRFVK
Subjt:  KEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVK

AT1G25440.1 B-box type zinc finger protein with CCT domain4.1e-1449.09Show/hide
Query:  LNLNLNCDEVLEAWSGRG---------------SLWAAASSLSN--DPTHD-PYMGE-VPRM---EEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEK
        L L LN D V+  W G+G               S W A S + N  + TH   Y+G  +P     +  R  RV RY+EKR TRLFSKKIRY+VRKLNAEK
Subjt:  LNLNLNCDEVLEAWSGRG---------------SLWAAASSLSN--DPTHD-PYMGE-VPRM---EEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEK

Query:  RPRIKGRFVK
        RPR+KGRFVK
Subjt:  RPRIKGRFVK

AT1G68520.1 B-box type zinc finger protein with CCT domain3.7e-1544.72Show/hide
Query:  GVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAA--ASSLSND----PTHDPYMGEVPRMEEE------------------RTRRVMRYKEKRNTRLFSK
        G ++ +KK  +L L L+ + V+  W G+G  W A   S +  D    PTH   MGE                         R  RV RY+EKR TRLFSK
Subjt:  GVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAA--ASSLSND----PTHDPYMGEVPRMEEE------------------RTRRVMRYKEKRNTRLFSK

Query:  KIRYQVRKLNAEKRPRIKGRFVK
        KIRY+VRKLNAEKRPR+KGRFVK
Subjt:  KIRYQVRKLNAEKRPRIKGRFVK

AT1G73870.1 B-box type zinc finger protein with CCT domain1.1e-1437.89Show/hide
Query:  EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAA---SSLSNDPTHDPYM---------
        ++E +V   I   D K   +  +EE          +  D      K +  SL L L+   V+ AW   GS W        +    T  P++         
Subjt:  EDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAA---SSLSNDPTHDPYM---------

Query:  --GEVPRM--------EEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVK
          G V R         + ER  RV+RYKEKR TRLFSKKIRY+VRKLNAE+RPRIKGRFVK
Subjt:  --GEVPRM--------EEERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVK

AT5G14370.1 CCT motif family protein2.8e-1546.3Show/hide
Query:  SLNLNLNCDEVLEAWSGRGSLWA------------AASSLSNDPTHDPYMGEVPRMEE-------ERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRP
        SL L L+ ++++EAWS +G+L+             A++   ND      +  VP ME         R   ++RYKEKR  RLFSK+IRYQVRKLNAEKRP
Subjt:  SLNLNLNCDEVLEAWSGRGSLWA------------AASSLSNDPTHDPYMGEVPRMEE-------ERTRRVMRYKEKRNTRLFSKKIRYQVRKLNAEKRP

Query:  RIKGRFVK
        R+KGRFVK
Subjt:  RIKGRFVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAGAGCCCAAAGAAAGAAGATGAACAACAAGTTCCTAATTCCATTTGGGACGATGACTTTAAAGCTTTTTTTGAGCTCACCGATGAAGAAAACCCACCGCCGCC
GATGCAGCCGGATTATCGTTTCCACGACCACGGCGTTATGGAAAGCAAGAAGAAGGCAGCTTCTTTGAACTTAAATCTCAACTGTGATGAGGTTTTGGAAGCATGGTCCG
GCCGTGGATCTCTTTGGGCCGCCGCGTCTTCTCTTTCCAACGACCCAACTCACGACCCCTATATGGGAGAGGTTCCAAGAATGGAGGAAGAAAGAACAAGAAGAGTGATG
AGGTACAAGGAAAAGCGTAACACCAGATTATTCTCCAAGAAGATAAGATACCAAGTTCGTAAGCTCAATGCAGAGAAAAGGCCTAGAATAAAGGGGCGTTTTGTGAAGAC
TGTTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGAAGAGCCCAAAGAAAGAAGATGAACAACAAGTTCCTAATTCCATTTGGGACGATGACTTTAAAGCTTTTTTTGAGCTCACCGATGAAGAAAACCCACCGCCGCC
GATGCAGCCGGATTATCGTTTCCACGACCACGGCGTTATGGAAAGCAAGAAGAAGGCAGCTTCTTTGAACTTAAATCTCAACTGTGATGAGGTTTTGGAAGCATGGTCCG
GCCGTGGATCTCTTTGGGCCGCCGCGTCTTCTCTTTCCAACGACCCAACTCACGACCCCTATATGGGAGAGGTTCCAAGAATGGAGGAAGAAAGAACAAGAAGAGTGATG
AGGTACAAGGAAAAGCGTAACACCAGATTATTCTCCAAGAAGATAAGATACCAAGTTCGTAAGCTCAATGCAGAGAAAAGGCCTAGAATAAAGGGGCGTTTTGTGAAGAC
TGTTGAATGA
Protein sequenceShow/hide protein sequence
MMKSPKKEDEQQVPNSIWDDDFKAFFELTDEENPPPPMQPDYRFHDHGVMESKKKAASLNLNLNCDEVLEAWSGRGSLWAAASSLSNDPTHDPYMGEVPRMEEERTRRVM
RYKEKRNTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTVE