; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G012410 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G012410
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNA binding (RRM/RBD/RNP motifs) family protein
Genome locationchr02:16318206..16323045
RNA-Seq ExpressionLsi02G012410
SyntenyLsi02G012410
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0030014 - CCR4-NOT complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR039780 - CCR4-NOT transcription complex subunit 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463873.1 PREDICTED: uncharacterized protein LOC103501902 isoform X1 [Cucumis melo]1.2e-4174.58Show/hide
Query:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS
        LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDS
Subjt:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS

Query:  FTKDEIISAYTSLSIEII
        FTKDEIISAYT   ++ I
Subjt:  FTKDEIISAYTSLSIEII

XP_008463876.1 PREDICTED: uncharacterized protein LOC103501902 isoform X3 [Cucumis melo]1.2e-4174.58Show/hide
Query:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS
        LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDS
Subjt:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS

Query:  FTKDEIISAYTSLSIEII
        FTKDEIISAYT   ++ I
Subjt:  FTKDEIISAYTSLSIEII

XP_022146241.1 uncharacterized protein LOC111015505 isoform X1 [Momordica charantia]1.2e-4174.58Show/hide
Query:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS
        LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDS
Subjt:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS

Query:  FTKDEIISAYTSLSIEII
        FTKDEIISAYT   ++ I
Subjt:  FTKDEIISAYTSLSIEII

XP_022146247.1 uncharacterized protein LOC111015505 isoform X2 [Momordica charantia]1.2e-4174.58Show/hide
Query:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS
        LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDS
Subjt:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS

Query:  FTKDEIISAYTSLSIEII
        FTKDEIISAYT   ++ I
Subjt:  FTKDEIISAYTSLSIEII

XP_038901785.1 uncharacterized protein LOC120088502 isoform X3 [Benincasa hispida]1.2e-4174.58Show/hide
Query:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS
        LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDS
Subjt:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS

Query:  FTKDEIISAYTSLSIEII
        FTKDEIISAYT   ++ I
Subjt:  FTKDEIISAYTSLSIEII

TrEMBL top hitse value%identityAlignment
A0A1S3CK79 uncharacterized protein LOC103501902 isoform X15.9e-4274.58Show/hide
Query:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS
        LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDS
Subjt:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS

Query:  FTKDEIISAYTSLSIEII
        FTKDEIISAYT   ++ I
Subjt:  FTKDEIISAYTSLSIEII

A0A1S3CLR8 uncharacterized protein LOC103501902 isoform X45.9e-4274.58Show/hide
Query:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS
        LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDS
Subjt:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS

Query:  FTKDEIISAYTSLSIEII
        FTKDEIISAYT   ++ I
Subjt:  FTKDEIISAYTSLSIEII

A0A5A7SZD0 Uncharacterized protein5.9e-4274.58Show/hide
Query:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS
        LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDS
Subjt:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS

Query:  FTKDEIISAYTSLSIEII
        FTKDEIISAYT   ++ I
Subjt:  FTKDEIISAYTSLSIEII

A0A6J1CXK4 uncharacterized protein LOC111015505 isoform X15.9e-4274.58Show/hide
Query:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS
        LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDS
Subjt:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS

Query:  FTKDEIISAYTSLSIEII
        FTKDEIISAYT   ++ I
Subjt:  FTKDEIISAYTSLSIEII

A0A6J1CZ27 uncharacterized protein LOC111015505 isoform X25.9e-4274.58Show/hide
Query:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS
        LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDS
Subjt:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS

Query:  FTKDEIISAYTSLSIEII
        FTKDEIISAYT   ++ I
Subjt:  FTKDEIISAYTSLSIEII

SwissProt top hitse value%identityAlignment
O95628 CCR4-NOT transcription complex subunit 45.7e-1837.19Show/hide
Query:  LLQRREYFGQYGKVLKV----------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFT
        +L+R EYFG++GK+ KV                S Y+TY + E+ +R IQ V+   ++G+ L+A  GTTKYC  +L+N+ C  P+C+YLHE+  +  SFT
Subjt:  LLQRREYFGQYGKVLKV----------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFT

Query:  KDEIISAYTSLSIEIILKEVY
        K+E+ +       + +L+E+Y
Subjt:  KDEIISAYTSLSIEIILKEVY

P34909 General negative regulator of transcription subunit 42.8e-1736.04Show/hide
Query:  LQRREYFGQYGKVLKV------------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVS
        L+  +YFGQYGK+ K+                         +YIT+   ++  RCI  V    ++G+ ++A +GTTKYC ++LR +PC NPNC++LHE  
Subjt:  LQRREYFGQYGKVLKV------------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVS

Query:  SQEDSFTKDEI
         + DSF K E+
Subjt:  SQEDSFTKDEI

Q09818 Putative general negative regulator of transcription C16C9.04c3.0e-1941.12Show/hide
Query:  MSLLQRREYFGQYGKVLKVSI---------------YITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSF
        +++L+  EYFGQYGK++K++I               YITY + E+  R I  +     +G+ LRA +GTTKYC ++LRN  C NP+C+YLHE   + DS+
Subjt:  MSLLQRREYFGQYGKVLKVSI---------------YITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSF

Query:  TKDEIIS
        TK+++ S
Subjt:  TKDEIIS

Q8BT14 CCR4-NOT transcription complex subunit 45.7e-1837.19Show/hide
Query:  LLQRREYFGQYGKVLKV----------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFT
        +L+R EYFG++GK+ KV                S Y+TY + E+ +R IQ V+   ++G+ L+A  GTTKYC  +L+N+ C  P+C+YLHE+  +  SFT
Subjt:  LLQRREYFGQYGKVLKV----------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFT

Query:  KDEIISAYTSLSIEIILKEVY
        K+E+ +       + +L+E+Y
Subjt:  KDEIISAYTSLSIEIILKEVY

Arabidopsis top hitse value%identityAlignment
AT2G28540.1 RNA binding (RRM/RBD/RNP motifs) family protein4.0e-3556.78Show/hide
Query:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS
        + QRREYFGQYGKV+KV                  S+YITYSK+EE +RCI++VH F L+G+ L+ACFGT KYCHAWLRN+PC+N  CLYLHE+ +QEDS
Subjt:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS

Query:  FTKDEIISAYTSLSIEII
        F+KDE ISA+    ++ I
Subjt:  FTKDEIISAYTSLSIEII

AT2G28540.2 RNA binding (RRM/RBD/RNP motifs) family protein4.0e-3556.78Show/hide
Query:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS
        + QRREYFGQYGKV+KV                  S+YITYSK+EE +RCI++VH F L+G+ L+ACFGT KYCHAWLRN+PC+N  CLYLHE+ +QEDS
Subjt:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS

Query:  FTKDEIISAYTSLSIEII
        F+KDE ISA+    ++ I
Subjt:  FTKDEIISAYTSLSIEII

AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein1.8e-3867.57Show/hide
Query:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS
        LLQR+EYFGQYGKVLKV                  S+YITY K+EE +RCIQ+VH F L+GK L+ACFGTTKYCHAWLRNV C N +CLYLHEV SQEDS
Subjt:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS

Query:  FTKDEIISAYT
        FTKDEIISA+T
Subjt:  FTKDEIISAYT

AT5G60170.1 RNA binding (RRM/RBD/RNP motifs) family protein9.3e-4069.37Show/hide
Query:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS
        LLQ +EYFGQYGKVLKV                  S+YITY K+EE VRCIQ VH F L+GKPL+ACFGTTKYCHAWLRNV C NP+CLYLHEV SQ+DS
Subjt:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS

Query:  FTKDEIISAYT
        FTKDEIISAYT
Subjt:  FTKDEIISAYT

AT5G60170.2 RNA binding (RRM/RBD/RNP motifs) family protein7.1e-4066.1Show/hide
Query:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS
        LLQ +EYFGQYGKVLKV                  S+YITY K+EE VRCIQ VH F L+GKPL+ACFGTTKYCHAWLRNV C NP+CLYLHEV SQ+DS
Subjt:  LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDS

Query:  FTKDEIISAYTSLSIEII
        FTKDEIISAYT   ++ I
Subjt:  FTKDEIISAYTSLSIEII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCTTCTTCAGCGTAGAGAATACTTTGGTCAGTATGGGAAAGTTTTAAAAGTGTCGATATATATTACATACTCAAAAGACGAGGAAGTTGTTCGATGTATCCAAAA
TGTACATCAGTTTGCCTTGGAGGGAAAACCATTAAGGGCATGCTTTGGAACGACAAAGTATTGTCATGCTTGGTTGAGGAATGTGCCTTGCACCAACCCTAATTGTTTGT
ATTTACACGAGGTTAGTTCTCAAGAAGATAGTTTCACAAAAGATGAAATCATTTCAGCATACACAAGTCTGTCAATTGAAATCATCTTGAAAGAAGTGTATGTGTCGACT
TAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTCTTCTTCAGCGTAGAGAATACTTTGGTCAGTATGGGAAAGTTTTAAAAGTGTCGATATATATTACATACTCAAAAGACGAGGAAGTTGTTCGATGTATCCAAAA
TGTACATCAGTTTGCCTTGGAGGGAAAACCATTAAGGGCATGCTTTGGAACGACAAAGTATTGTCATGCTTGGTTGAGGAATGTGCCTTGCACCAACCCTAATTGTTTGT
ATTTACACGAGGTTAGTTCTCAAGAAGATAGTTTCACAAAAGATGAAATCATTTCAGCATACACAAGTCTGTCAATTGAAATCATCTTGAAAGAAGTGTATGTGTCGACT
TAG
Protein sequenceShow/hide protein sequence
MSLLQRREYFGQYGKVLKVSIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYTSLSIEIILKEVYVST