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Lsi02G012520 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G012520
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPhotosystem II CP47 reaction center protein
Genome locationchr02:16532392..16533799
RNA-Seq ExpressionLsi02G012520
SyntenyLsi02G012520
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domainsIPR000932 - Photosystem antenna protein-like
IPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold
IPR036001 - Photosystem antenna protein-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFS35540.1 photosystem II CP47 chlorophyll apoprotein, partial [Fragaria pentaphylla]9.0e-2181.82Show/hide
Query:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAVRGGRVKDLPGVRYHIVR
        VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA   G +  L G+ Y  VR
Subjt:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAVRGGRVKDLPGVRYHIVR

ONH94778.1 hypothetical protein PRUPE_7G029800 [Prunus persica]3.4e-2077.94Show/hide
Query:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAVRGGRVKDLPGVRYHIVRGT
        VTGLYGPGIWVSDPYGLTGRVQ+VNPAWGVEGFDPFVPGGIASHHIAA   G +  L G+ +  VR T
Subjt:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAVRGGRVKDLPGVRYHIVRGT

YP_009631169.1 PsbB [Sanguisorba tenuifolia]4.5e-20100Show/hide
Query:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
        VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
Subjt:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA

YP_009757176.1 photosystem II CP47 chlorophyll apoprotein [Elatostema dissectum]4.5e-20100Show/hide
Query:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
        VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
Subjt:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA

YP_009865130.1 photosystem II CP47 chlorophyll apoprotein [Alchemilla argyrophylla]4.5e-20100Show/hide
Query:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
        VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
Subjt:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA

TrEMBL top hitse value%identityAlignment
A0A218KG68 Photosystem II CP47 reaction center protein2.2e-20100Show/hide
Query:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
        VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
Subjt:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA

A0A251N607 Uncharacterized protein1.7e-2077.94Show/hide
Query:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAVRGGRVKDLPGVRYHIVRGT
        VTGLYGPGIWVSDPYGLTGRVQ+VNPAWGVEGFDPFVPGGIASHHIAA   G +  L G+ +  VR T
Subjt:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAVRGGRVKDLPGVRYHIVRGT

A0A3P8MVS2 Photosystem II CP47 reaction center protein2.2e-20100Show/hide
Query:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
        VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
Subjt:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA

A0A6H0ERV3 Photosystem II CP47 reaction center protein2.2e-20100Show/hide
Query:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
        VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
Subjt:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA

J9Y4P2 Photosystem II CP47 chlorophyll apoprotein (Fragment)4.4e-2181.82Show/hide
Query:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAVRGGRVKDLPGVRYHIVR
        VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA   G +  L G+ Y  VR
Subjt:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAVRGGRVKDLPGVRYHIVR

SwissProt top hitse value%identityAlignment
A4GGD1 Photosystem II CP47 reaction center protein2.2e-2293.75Show/hide
Query:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
        VTGLYGPGIWVSDPYGLTGR+Q+VNPAWGVEGFDPFVPGG+ASHHIAA
Subjt:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA

A6MM62 Photosystem II CP47 reaction center protein2.9e-2295.83Show/hide
Query:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
        VTGLYGPGIWVSDPYGLTG+VQ+VNPAWGVEGFDPFVPGGIASHHIAA
Subjt:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA

Q09WZ1 Photosystem II CP47 reaction center protein5.9e-23100Show/hide
Query:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
        VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
Subjt:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA

Q2PMQ9 Photosystem II CP47 reaction center protein2.2e-2293.75Show/hide
Query:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
        VTGLYGPGIWVSDPYGLTGR+Q+VNPAWGVEGFDPFVPGG+ASHHIAA
Subjt:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA

Q2QD63 Photosystem II CP47 reaction center protein5.9e-23100Show/hide
Query:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
        VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
Subjt:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein1.5e-0548.72Show/hide
Query:  HHIAAVRGGRVKDLPGVRYHIVRGTLDVVEVKDRQQGRS
        H    +RGGRVKD PGV+ H +RG  D++ +  R++GRS
Subjt:  HHIAAVRGGRVKDLPGVRYHIVRGTLDVVEVKDRQQGRS

ATCG00065.1 ribosomal protein S12A3.0e-1449.44Show/hide
Query:  KQGQVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPG---GIASHHIAAVRGGRVKDLPGVRYHIVRGTLDVVEVKDRQQGRS
        ++G  T +Y   I    P     +V  V    G E    ++PG    +  H +  VRGGRVKDLPGVRYHIVRGTLD V VKDRQQGRS
Subjt:  KQGQVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPG---GIASHHIAAVRGGRVKDLPGVRYHIVRGTLDVVEVKDRQQGRS

ATCG00680.1 photosystem II reaction center protein B3.5e-2395.83Show/hide
Query:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA
        VTGLYGPGIWVSDPYGLTG+VQ VNPAWGVEGFDPFVPGGIASHHIAA
Subjt:  VTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAA

ATCG00905.1 ribosomal protein S12C3.0e-1449.44Show/hide
Query:  KQGQVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPG---GIASHHIAAVRGGRVKDLPGVRYHIVRGTLDVVEVKDRQQGRS
        ++G  T +Y   I    P     +V  V    G E    ++PG    +  H +  VRGGRVKDLPGVRYHIVRGTLD V VKDRQQGRS
Subjt:  KQGQVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPG---GIASHHIAAVRGGRVKDLPGVRYHIVRGTLDVVEVKDRQQGRS

ATCG01230.1 ribosomal protein S12B3.0e-1449.44Show/hide
Query:  KQGQVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPG---GIASHHIAAVRGGRVKDLPGVRYHIVRGTLDVVEVKDRQQGRS
        ++G  T +Y   I    P     +V  V    G E    ++PG    +  H +  VRGGRVKDLPGVRYHIVRGTLD V VKDRQQGRS
Subjt:  KQGQVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPG---GIASHHIAAVRGGRVKDLPGVRYHIVRGTLDVVEVKDRQQGRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATATACTCGGGGGGTGGGTGCAGGGCGGACGATTTGTCTAATTGTCCAGGCGGTGAAGCAGGGTCAGGTAACCGGATTGTATGGTCCGGGAATATGGGTATCCGA
TCCTTATGGATTAACCGGAAGGGTACAAGCTGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCTCGCATCATATTGCAGCAGTAA
GAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGCACCCTAGATGTTGTCGAAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATATACTCGGGGGGTGGGTGCAGGGCGGACGATTTGTCTAATTGTCCAGGCGGTGAAGCAGGGTCAGGTAACCGGATTGTATGGTCCGGGAATATGGGTATCCGA
TCCTTATGGATTAACCGGAAGGGTACAAGCTGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCTCGCATCATATTGCAGCAGTAA
GAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGCACCCTAGATGTTGTCGAAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG
Protein sequenceShow/hide protein sequence
MAYTRGVGAGRTICLIVQAVKQGQVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAVRGGRVKDLPGVRYHIVRGTLDVVEVKDRQQGRSSAL