; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G012610 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G012610
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibosomal protein L41 family
Genome locationchr02:16752723..16760795
RNA-Seq ExpressionLsi02G012610
SyntenyLsi02G012610
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR007836 - Ribosomal protein L41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4365730.1 hypothetical protein G4B88_009453 [Cannabis sativa]1.7e-0835.35Show/hide
Query:  MRAKWKKKRMRRLKRKRRKMRQRSKAKSSYADMPFSLIWFVQVAIGLIMYRIPIQAFSWQQPTRRFIPYKFLIKKRIFFGYSAQLSSVLQKPEFGLGRYY
        MRAKWKKKRMRRLKRKRRKMRQRSK + +                                                                       
Subjt:  MRAKWKKKRMRRLKRKRRKMRQRSKAKSSYADMPFSLIWFVQVAIGLIMYRIPIQAFSWQQPTRRFIPYKFLIKKRIFFGYSAQLSSVLQKPEFGLGRYY

Query:  NAHITVKYLSGQCGIEHPLIGDLKTMLNAASRSASAFASGHRGKCFNTALSSTNEASFPSSHFTNLSTSTMSLGAVASTSLINQFTNSPCVSTSDFIC
                                  L AASR  SAF SGH GKC  TALSST E S  SS  T  STS + L A  STSLIN+  NS C STSDF C
Subjt:  NAHITVKYLSGQCGIEHPLIGDLKTMLNAASRSASAFASGHRGKCFNTALSSTNEASFPSSHFTNLSTSTMSLGAVASTSLINQFTNSPCVSTSDFIC
TrEMBL top hitse value%identityAlignment
A0A7J6F7M0 Uncharacterized protein8.3e-0935.35Show/hide
Query:  MRAKWKKKRMRRLKRKRRKMRQRSKAKSSYADMPFSLIWFVQVAIGLIMYRIPIQAFSWQQPTRRFIPYKFLIKKRIFFGYSAQLSSVLQKPEFGLGRYY
        MRAKWKKKRMRRLKRKRRKMRQRSK + +                                                                       
Subjt:  MRAKWKKKRMRRLKRKRRKMRQRSKAKSSYADMPFSLIWFVQVAIGLIMYRIPIQAFSWQQPTRRFIPYKFLIKKRIFFGYSAQLSSVLQKPEFGLGRYY

Query:  NAHITVKYLSGQCGIEHPLIGDLKTMLNAASRSASAFASGHRGKCFNTALSSTNEASFPSSHFTNLSTSTMSLGAVASTSLINQFTNSPCVSTSDFIC
                                  L AASR  SAF SGH GKC  TALSST E S  SS  T  STS + L A  STSLIN+  NS C STSDF C
Subjt:  NAHITVKYLSGQCGIEHPLIGDLKTMLNAASRSASAFASGHRGKCFNTALSSTNEASFPSSHFTNLSTSTMSLGAVASTSLINQFTNSPCVSTSDFIC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G56045.1 Ribosomal protein L41 family2.7e-04100Show/hide
Query:  MRAKWKKKRMRRLKRKRRKMRQRSK
        MRAKWKKKRMRRLKRKRRKMRQRSK
Subjt:  MRAKWKKKRMRRLKRKRRKMRQRSK
AT2G40205.1 Ribosomal protein L41 family2.7e-04100Show/hide
Query:  MRAKWKKKRMRRLKRKRRKMRQRSK
        MRAKWKKKRMRRLKRKRRKMRQRSK
Subjt:  MRAKWKKKRMRRLKRKRRKMRQRSK
AT3G08520.1 Ribosomal protein L41 family2.7e-04100Show/hide
Query:  MRAKWKKKRMRRLKRKRRKMRQRSK
        MRAKWKKKRMRRLKRKRRKMRQRSK
Subjt:  MRAKWKKKRMRRLKRKRRKMRQRSK
AT3G11120.1 Ribosomal protein L41 family2.7e-04100Show/hide
Query:  MRAKWKKKRMRRLKRKRRKMRQRSK
        MRAKWKKKRMRRLKRKRRKMRQRSK
Subjt:  MRAKWKKKRMRRLKRKRRKMRQRSK
AT3G56020.1 Ribosomal protein L41 family2.7e-04100Show/hide
Query:  MRAKWKKKRMRRLKRKRRKMRQRSK
        MRAKWKKKRMRRLKRKRRKMRQRSK
Subjt:  MRAKWKKKRMRRLKRKRRKMRQRSK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAATTATTGTAGCGGTCCTTCTTCCCTCCGCCGTTCGTCTGCATTTGAGGAAGCTCACTTTACAGAGAGCACTCGAACTTCTTTTCGCAGTATCGCCATGAGAGC
TAAGTGGAAGAAGAAGAGAATGAGGAGATTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAAGCTAAGTCTAGTTATGCTGATATGCCATTTTCCTTGATATGGT
TTGTACAAGTTGCAATAGGATTGATTATGTATAGAATACCCATTCAAGCATTTAGTTGGCAACAGCCAACAAGAAGATTCATTCCCTATAAGTTTCTAATCAAGAAGCGT
ATTTTCTTTGGCTACTCAGCCCAGCTTTCTTCAGTCCTTCAAAAGCCAGAGTTTGGTCTTGGAAGGTATTATAATGCTCATATTACTGTGAAATACCTGAGCGGGCAATG
CGGAATCGAACATCCACTGATAGGGGATTTGAAAACTATGCTAAATGCTGCCTCCCGCAGTGCATCTGCTTTCGCCTCTGGCCACCGCGGGAAGTGCTTCAATACTGCTC
TCTCGTCCACCAACGAGGCTAGTTTCCCATCCAGCCATTTCACAAACCTCTCTACCTCTACTATGTCTCTTGGCGCTGTCGCTTCCACTTCTTTGATCAACCAATTCACG
AACTCCCCATGTGTTTCCACCTCTGATTTTATCTGCAATGTGTTCCGTCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAATTATTGTAGCGGTCCTTCTTCCCTCCGCCGTTCGTCTGCATTTGAGGAAGCTCACTTTACAGAGAGCACTCGAACTTCTTTTCGCAGTATCGCCATGAGAGC
TAAGTGGAAGAAGAAGAGAATGAGGAGATTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAAGCTAAGTCTAGTTATGCTGATATGCCATTTTCCTTGATATGGT
TTGTACAAGTTGCAATAGGATTGATTATGTATAGAATACCCATTCAAGCATTTAGTTGGCAACAGCCAACAAGAAGATTCATTCCCTATAAGTTTCTAATCAAGAAGCGT
ATTTTCTTTGGCTACTCAGCCCAGCTTTCTTCAGTCCTTCAAAAGCCAGAGTTTGGTCTTGGAAGGTATTATAATGCTCATATTACTGTGAAATACCTGAGCGGGCAATG
CGGAATCGAACATCCACTGATAGGGGATTTGAAAACTATGCTAAATGCTGCCTCCCGCAGTGCATCTGCTTTCGCCTCTGGCCACCGCGGGAAGTGCTTCAATACTGCTC
TCTCGTCCACCAACGAGGCTAGTTTCCCATCCAGCCATTTCACAAACCTCTCTACCTCTACTATGTCTCTTGGCGCTGTCGCTTCCACTTCTTTGATCAACCAATTCACG
AACTCCCCATGTGTTTCCACCTCTGATTTTATCTGCAATGTGTTCCGTCTCTAA
Protein sequenceShow/hide protein sequence
MANYCSGPSSLRRSSAFEEAHFTESTRTSFRSIAMRAKWKKKRMRRLKRKRRKMRQRSKAKSSYADMPFSLIWFVQVAIGLIMYRIPIQAFSWQQPTRRFIPYKFLIKKR
IFFGYSAQLSSVLQKPEFGLGRYYNAHITVKYLSGQCGIEHPLIGDLKTMLNAASRSASAFASGHRGKCFNTALSSTNEASFPSSHFTNLSTSTMSLGAVASTSLINQFT
NSPCVSTSDFICNVFRL