; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G012660 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G012660
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRAN binding protein 1
Genome locationchr02:16789017..16792323
RNA-Seq ExpressionLsi02G012660
SyntenyLsi02G012660
Gene Ontology termsGO:0046907 - intracellular transport (biological process)
GO:0050790 - regulation of catalytic activity (biological process)
GO:0005643 - nuclear pore (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0005096 - GTPase activator activity (molecular function)
InterPro domainsIPR000156 - Ran binding domain
IPR011993 - PH-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFZ01582.1 RAN binding protein 1 [Actinidia rufa]5.4e-2288.14Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTT
        MRQ KTLKIC NHLVLP+M VQEHAGNDKSCVWHATDFADGELKDELFCIRF S+E TT
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTT

RVW66217.1 Ran-binding protein 1-like c [Vitis vinifera]7.0e-2289.47Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIER
        MRQ KTLKIC NHLVLP+M VQEHAGNDKSCVWHATDFADGELKDELFCIRF+S+ER
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIER

XP_008457356.1 PREDICTED: ran-binding protein 1 homolog a-like [Cucumis melo]7.0e-2241.63Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTVLIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVI
        MRQ KTLKIC NHLVLPSM VQEHAGNDKSCVWHATDFADGELKDELFCIRF SIE                    M     I +S              
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTVLIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVI

Query:  GVLIVKRGSWQWQSRTPEDWKLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKAGEEPARVKKEDNHKEGEPEK
                    Q +  E+                                    +D  +   L  KL+ V+    EDKA EEPA+ KKED  K GEPEK
Subjt:  GVLIVKRGSWQWQSRTPEDWKLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKAGEEPARVKKEDNHKEGEPEK

Query:  SDVEKNNDE
        SD EK NDE
Subjt:  SDVEKNNDE

XP_022970594.1 ran-binding protein 1 homolog a-like [Cucurbita maxima]9.1e-2240.67Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTVLIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVI
        MRQ KTLKIC NHLVLPSM VQEHAGNDKSCVWHATDFADGELKDELFCIRF SIE                    M     I +S              
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTVLIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVI

Query:  GVLIVKRGSWQWQSRTPEDWKLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKAGEEPARVKKEDNHKEGEPEK
                    Q +  E+                                    +D  S   L  KL+ V+    EDKAGE P++ K+ED  K GE EK
Subjt:  GVLIVKRGSWQWQSRTPEDWKLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKAGEEPARVKKEDNHKEGEPEK

Query:  SDVEKNNDE
        SD EK NDE
Subjt:  SDVEKNNDE

XP_038894912.1 LOW QUALITY PROTEIN: ran-binding protein 1 homolog a-like [Benincasa hispida]2.6e-2442.11Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTVLIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVI
        MRQ KTLKIC NHLVLPSM VQEHAGNDKSCVWHATDFADGELKDELFCIRF SIE                         S  ++   I          
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTVLIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVI

Query:  GVLIVKRGSWQWQSRTPEDWKLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKAGEEPARVKKEDNHKEGEPEK
                  + Q +  E+                                    +D  +   L  KL+ V+   AEDKAGEEPA+ KKED+ KEGEPE 
Subjt:  GVLIVKRGSWQWQSRTPEDWKLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKAGEEPARVKKEDNHKEGEPEK

Query:  SDVEKNNDE
        SD EK NDE
Subjt:  SDVEKNNDE

TrEMBL top hitse value%identityAlignment
A0A1S3C5F4 ran-binding protein 1 homolog a-like3.4e-2241.63Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTVLIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVI
        MRQ KTLKIC NHLVLPSM VQEHAGNDKSCVWHATDFADGELKDELFCIRF SIE                    M     I +S              
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTVLIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVI

Query:  GVLIVKRGSWQWQSRTPEDWKLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKAGEEPARVKKEDNHKEGEPEK
                    Q +  E+                                    +D  +   L  KL+ V+    EDKA EEPA+ KKED  K GEPEK
Subjt:  GVLIVKRGSWQWQSRTPEDWKLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKAGEEPARVKKEDNHKEGEPEK

Query:  SDVEKNNDE
        SD EK NDE
Subjt:  SDVEKNNDE

A0A438G1Y4 Ran-binding protein 1-like c3.4e-2289.47Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIER
        MRQ KTLKIC NHLVLP+M VQEHAGNDKSCVWHATDFADGELKDELFCIRF+S+ER
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIER

A0A5A7UVW8 Ran-binding protein 1-like protein a-like3.4e-2241.63Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTVLIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVI
        MRQ KTLKIC NHLVLPSM VQEHAGNDKSCVWHATDFADGELKDELFCIRF SIE                    M     I +S              
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTVLIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVI

Query:  GVLIVKRGSWQWQSRTPEDWKLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKAGEEPARVKKEDNHKEGEPEK
                    Q +  E+                                    +D  +   L  KL+ V+    EDKA EEPA+ KKED  K GEPEK
Subjt:  GVLIVKRGSWQWQSRTPEDWKLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKAGEEPARVKKEDNHKEGEPEK

Query:  SDVEKNNDE
        SD EK NDE
Subjt:  SDVEKNNDE

A0A6J1I618 ran-binding protein 1 homolog a-like4.4e-2240.67Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTVLIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVI
        MRQ KTLKIC NHLVLPSM VQEHAGNDKSCVWHATDFADGELKDELFCIRF SIE                    M     I +S              
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTVLIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVI

Query:  GVLIVKRGSWQWQSRTPEDWKLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKAGEEPARVKKEDNHKEGEPEK
                    Q +  E+                                    +D  S   L  KL+ V+    EDKAGE P++ K+ED  K GE EK
Subjt:  GVLIVKRGSWQWQSRTPEDWKLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKAGEEPARVKKEDNHKEGEPEK

Query:  SDVEKNNDE
        SD EK NDE
Subjt:  SDVEKNNDE

A0A7J0FSA2 RAN binding protein 12.6e-2288.14Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTT
        MRQ KTLKIC NHLVLP+M VQEHAGNDKSCVWHATDFADGELKDELFCIRF S+E TT
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTT

SwissProt top hitse value%identityAlignment
P49792 E3 SUMO-protein ligase RanBP22.1e-0845Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTV
        MR+ + LKIC NH + P M +  +AG+D+S VWHA D+AD   K E   IRF + E   +
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTV

P92985 Ran-binding protein 1 homolog c8.0e-2178.57Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE
        MRQ KTLKIC NHL+   M VQEH+GN+KSC+WHATDF+DGELKDELFCIRF+SIE
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE

Q8RWG8 Ran-binding protein 1 homolog b4.7e-2182.14Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE
        MRQ KTLKIC NHLV   M VQEHAGNDKSCVWHA DF+DGELKDELFCIRF+S+E
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE

Q9ERU9 E3 SUMO-protein ligase RanBP22.1e-0845Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTV
        MR+ + LKIC NH + P M +  +AG+D+S VWHA D+AD   K E   IRF + E   +
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTV

Q9LMK7 Ran-binding protein 1 homolog a2.3e-2080.36Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE
        MRQ KTLKIC NH V   M VQEH GN+KSCVWHA DFADGELKDELFCIRF+SIE
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE

Arabidopsis top hitse value%identityAlignment
AT1G07140.1 Pleckstrin homology (PH) domain superfamily protein1.7e-2180.36Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE
        MRQ KTLKIC NH V   M VQEH GN+KSCVWHA DFADGELKDELFCIRF+SIE
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE

AT2G30060.1 Pleckstrin homology (PH) domain superfamily protein3.3e-2282.14Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE
        MRQ KTLKIC NHLV   M VQEHAGNDKSCVWHA DF+DGELKDELFCIRF+S+E
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE

AT5G58590.1 RAN binding protein 15.7e-2278.57Show/hide
Query:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE
        MRQ KTLKIC NHL+   M VQEH+GN+KSC+WHATDF+DGELKDELFCIRF+SIE
Subjt:  MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACAGCCTAAGACGCTTAAGATCTGCACTAATCATCTTGTTCTTCCATCAATGATGGTTCAGGAACACGCGGGAAATGATAAATCGTGCGTGTGGCATGCGACTGA
CTTTGCTGATGGCGAATTGAAAGATGAGCTTTTCTGTATCAGATTCTCATCTATTGAGAGAACTACAGTATTAATCTACGATCATGATATGGATCTAAGTCTAATGTTTC
CCTTAAACATGGTGATACTTGGTTCTATTAAAGATTCAAGCACTTCTATAATTCTGTTTCTGTGTTTAAAATGGGTAATTGGAGTACTTATTGTGAAGAGAGGATCGTGG
CAATGGCAGAGTAGGACCCCGGAGGATTGGAAGTTGCAGGAGATGATTCATGTCCACTCCATAATCTTTTGTTGTTGTGTCTTAAATGAATGTCTGTATGTCAAATTTAC
TTGGGAATTAGGTCCTTTATCATTAAGAGATCAAATTTCATTGAAATCTTTAACTTTTAAACTCACTCAAGTTAAAGGTCTTGTAGCTGAAGATAAAGCTGGGGAGGAAC
CCGCCAGAGTTAAGAAAGAGGATAACCACAAGGAGGGTGAGCCAGAAAAATCAGATGTAGAGAAGAATAATGATGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGACAGCCTAAGACGCTTAAGATCTGCACTAATCATCTTGTTCTTCCATCAATGATGGTTCAGGAACACGCGGGAAATGATAAATCGTGCGTGTGGCATGCGACTGA
CTTTGCTGATGGCGAATTGAAAGATGAGCTTTTCTGTATCAGATTCTCATCTATTGAGAGAACTACAGTATTAATCTACGATCATGATATGGATCTAAGTCTAATGTTTC
CCTTAAACATGGTGATACTTGGTTCTATTAAAGATTCAAGCACTTCTATAATTCTGTTTCTGTGTTTAAAATGGGTAATTGGAGTACTTATTGTGAAGAGAGGATCGTGG
CAATGGCAGAGTAGGACCCCGGAGGATTGGAAGTTGCAGGAGATGATTCATGTCCACTCCATAATCTTTTGTTGTTGTGTCTTAAATGAATGTCTGTATGTCAAATTTAC
TTGGGAATTAGGTCCTTTATCATTAAGAGATCAAATTTCATTGAAATCTTTAACTTTTAAACTCACTCAAGTTAAAGGTCTTGTAGCTGAAGATAAAGCTGGGGAGGAAC
CCGCCAGAGTTAAGAAAGAGGATAACCACAAGGAGGGTGAGCCAGAAAAATCAGATGTAGAGAAGAATAATGATGAGTAG
Protein sequenceShow/hide protein sequence
MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTVLIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVIGVLIVKRGSW
QWQSRTPEDWKLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKAGEEPARVKKEDNHKEGEPEKSDVEKNNDE