CuGenDBv2

Gene ID	Lsi02G012720
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	PHD finger-like domain-containing protein 5B
Genome location	chr02:16920156..16920488
RNA-Seq Expression	Lsi02G012720
Synteny	Lsi02G012720
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0009052 - pentose-phosphate shunt, non-oxidative branch (biological process) GO:1901800 - positive regulation of proteasomal protein catabolic process (biological process) GO:0000502 - proteasome complex (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0004751 - ribose-5-phosphate isomerase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0036402 - proteasome-activating ATPase activity (molecular function)
InterPro domains	IPR005345 - PHF5-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAB4080914.1 unnamed protein product [Lactuca saligna]

6.2e-62

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

KAG7019124.1 PHD finger-like domain-containing protein 5B, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.2e-62

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

NP_001235659.1 PHD finger-like domain-containing protein 5A-like [Glycine max]

6.2e-62

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

THU49754.1 hypothetical protein C4D60_Mb06t12860 [Musa balbisiana]

6.2e-62

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

XP_022679553.1 PHD finger-like domain-containing protein 5B isoform X1 [Setaria italica]

6.2e-62

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3VFD8 PHD finger-like domain-containing protein 5B

3.0e-62

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

A0A1U7WEQ8 PHD finger-like domain-containing protein 5B

3.0e-62

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

A0A1U8I119 PHD finger-like domain-containing protein 5B

3.0e-62

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

A0A6J1I5N2 PHD finger-like domain-containing protein 5B

3.0e-62

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

C5XAZ5 Uncharacterized protein

3.0e-62

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

SwissProt top hits

e value

%identity

Alignment

P0DI19 PHD finger-like domain-containing protein 5A

1.1e-64

99.09

Show/hide

Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

P83870 PHD finger-like domain-containing protein 5A

1.2e-60

91.82

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

P83871 PHD finger-like domain-containing protein 5A

1.2e-60

91.82

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

Q0WMV8 PHD finger-like domain-containing protein 5B

1.1e-64

99.09

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

Q7RTV0 PHD finger-like domain-containing protein 5A

1.2e-60

91.82

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

Arabidopsis top hits

e value

%identity

Alignment

AT1G07170.1 PHF5-like protein

7.6e-66

99.09

Show/hide

Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

AT1G07170.2 PHF5-like protein

7.6e-66

99.09

Show/hide

Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

AT1G07170.3 PHF5-like protein

7.6e-66

99.09

Show/hide

Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

AT2G30000.1 PHF5-like protein

7.6e-66

99.09

Show/hide

Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCCAAGCATCACCCCGATTTGATTATGTGCAGAAAGCAGCCAGGAATTGCCATTGGCCGACTTTGTGAGAAGTGCGACGGGAAGTGTGTAATCTGTGATTCTTATGT
CCGTCCCTGTACGCTTGTTCGTGTTTGTGATGAATGCAATTACGGGTCTTTCCAAGGCCGCTGTGTGATCTGTGGAGGAGTAGGAATTTCAGATGCCTACTACTGCAAAG
AGTGTACACAGCAGGAGAAAGATAGAGATGGATGTCCAAAGATTGTTAACTTAGGCAGTGCAAAAACAGACTTGTTCTATGAACGTAAGAAATATGGGTTCAAGAAACGA
TAA

mRNA sequence

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Protein sequence

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MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

Lsi02G012720 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome