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Lsi02G012740 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G012740
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionextensin-like isoform X2
Genome locationchr02:16937459..16938438
RNA-Seq ExpressionLsi02G012740
SyntenyLsi02G012740
Gene Ontology termsNA
InterPro domainsIPR034430 - Protein PSY


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4369213.1 hypothetical protein G4B88_009511 [Cannabis sativa]1.2e-1941.18Show/hide
Query:  RLTPHSEKQDTAIMIKDYTDPGANPRHDPNQPPMMIN-------DYTDPGANPRHDPNQPP------MMINDYADPRANPRHDP------NQPPMMINDY
        +L P     +  + I+DY DPG+NPRH  + PP+M N       DY   G NPRH P+ PP      + + DYADP  NPRH P      N+  + I DY
Subjt:  RLTPHSEKQDTAIMIKDYTDPGANPRHDPNQPPMMIN-------DYTDPGANPRHDPNQPP------MMINDYADPRANPRHDP------NQPPMMINDY

Query:  ADPGANPRHDPNQPPMMIN-------DYTDPGANPRHDPNQPPPPSPRRFEVR
        ADPG+NPRH  + PP+M N       DY   G NPRH P+ PP  +  +  V+
Subjt:  ADPGANPRHDPNQPPMMIN-------DYTDPGANPRHDPNQPPPPSPRRFEVR

XP_022948580.1 extensin-like isoform X1 [Cucurbita moschata]2.6e-1739.8Show/hide
Query:  LTLFLSFALITAARLTPH--SEKQDTAIMIKDYTDPGANPRHDPNQP-----------PMMINDYTDPGAN-------PRHDPNQPP----MMINDYADP
        L   LSFAL+++AR+     S KQ T I+I DY+DPG NP   P  P           P  INDY+DPG N       P+  P  PP     +INDY+DP
Subjt:  LTLFLSFALITAARLTPH--SEKQDTAIMIKDYTDPGANPRHDPNQP-----------PMMINDYTDPGAN-------PRHDPNQPP----MMINDYADP

Query:  RAN-------PRHDPNQPP----MMINDYADPGAN-------PRHDPNQPP----MMINDYTDPGANPRHDPNQP---PPPSPRRFEVRTTNGHIS
          N       P+  P  PP     +INDY+DPG N       P+  P  PP     +INDY+DPG NP   P  P   PPP P        N HIS
Subjt:  RAN-------PRHDPNQPP----MMINDYADPGAN-------PRHDPNQPP----MMINDYTDPGANPRHDPNQP---PPPSPRRFEVRTTNGHIS

XP_022948581.1 extensin-like isoform X2 [Cucurbita moschata]8.1e-1940.21Show/hide
Query:  LTLFLSFALITAARLTPHSEKQDTAIMIKDYTDPGANPRHDPNQP-----------PMMINDYTDPGAN-------PRHDPNQPP----MMINDYADPRA
        L   LSFAL+++AR+   S KQ T I+I DY+DPG NP   P  P           P  INDY+DPG N       P+  P  PP     +INDY+DP  
Subjt:  LTLFLSFALITAARLTPHSEKQDTAIMIKDYTDPGANPRHDPNQP-----------PMMINDYTDPGAN-------PRHDPNQPP----MMINDYADPRA

Query:  N-------PRHDPNQPP----MMINDYADPGAN-------PRHDPNQPP----MMINDYTDPGANPRHDPNQP---PPPSPRRFEVRTTNGHIS
        N       P+  P  PP     +INDY+DPG N       P+  P  PP     +INDY+DPG NP   P  P   PPP P        N HIS
Subjt:  N-------PRHDPNQPP----MMINDYADPGAN-------PRHDPNQPP----MMINDYTDPGANPRHDPNQP---PPPSPRRFEVRTTNGHIS

XP_030505386.1 sporozoite surface protein 2-like [Cannabis sativa]2.3e-1840.67Show/hide
Query:  PHSEKQDTAIMIKDYTDPGANPRHDPNQPPMMIN-------DYTDPGANPRHDPNQPP------MMINDYADPRANPRHDP------NQPPMMINDYADP
        P     +  + I+DY DPG+NPRH  + PP+M N       DY   G NPRH P+ PP      + + DYADP  NPRH P      N+  + I DYADP
Subjt:  PHSEKQDTAIMIKDYTDPGANPRHDPNQPPMMIN-------DYTDPGANPRHDPNQPP------MMINDYADPRANPRHDP------NQPPMMINDYADP

Query:  GANPRHDPNQPPMMIN-------DYTDPGANPRHDPNQPPPPSPRRFEVR
        G+NPRH  + PP+M N       DY   G NPR+ P+ PP  +  +  V+
Subjt:  GANPRHDPNQPPMMIN-------DYTDPGANPRHDPNQPPPPSPRRFEVR

XP_038895781.1 circumsporozoite protein-like [Benincasa hispida]8.2e-6472.41Show/hide
Query:  MDYFEARLTLF--LSFALITAARLTPHSEKQDTAIMIKDYTDPGANPRHDPNQPPMMINDYTDPGANPRHDPNQPPMMINDYADP---------------
        M+YF+ARLT F  LSFALIT AR+TPHSE Q+  I I DY DPGANPRHDPNQPPMMINDY DPGANPRHDPNQ PMMINDY DP               
Subjt:  MDYFEARLTLF--LSFALITAARLTPHSEKQDTAIMIKDYTDPGANPRHDPNQPPMMINDYTDPGANPRHDPNQPPMMINDYADP---------------

Query:  -RANPRHDPNQPPMMINDYADPGANPRHDPNQPPMMINDYTDPGANPRHDPNQPPPPSPRRFEVRTTNGHISRN
         RANPRHDPNQPPMMINDY DP ANPRHDPNQPPMMINDY D GANPRHD NQ PP  PRRF+V    GH+S+N
Subjt:  -RANPRHDPNQPPMMINDYADPGANPRHDPNQPPMMINDYTDPGANPRHDPNQPPPPSPRRFEVRTTNGHISRN

TrEMBL top hitse value%identityAlignment
A0A0E0DTA0 Uncharacterized protein5.3e-1638.57Show/hide
Query:  TAIMIKDYTDPGANPRHDPNQPP---------------MMINDYTDPGANPRHDPNQPP---MMINDYADPRANPRHDPNQPPMMINDYADPGANPRHDP
        T + + DY  PGANPRH+P +PP               + +NDY  PGANPRH+P +PP   M +        N         + +NDY  PGANPRH+P
Subjt:  TAIMIKDYTDPGANPRHDPNQPP---------------MMINDYTDPGANPRHDPNQPP---MMINDYADPRANPRHDPNQPPMMINDYADPGANPRHDP

Query:  NQPP---------------MMINDYTDPGANPRHDPNQPP
         +PP               + +NDY  PGANPRH+P +PP
Subjt:  NQPP---------------MMINDYTDPGANPRHDPNQPP

A0A6J1G9M0 extensin-like isoform X23.9e-1940.21Show/hide
Query:  LTLFLSFALITAARLTPHSEKQDTAIMIKDYTDPGANPRHDPNQP-----------PMMINDYTDPGAN-------PRHDPNQPP----MMINDYADPRA
        L   LSFAL+++AR+   S KQ T I+I DY+DPG NP   P  P           P  INDY+DPG N       P+  P  PP     +INDY+DP  
Subjt:  LTLFLSFALITAARLTPHSEKQDTAIMIKDYTDPGANPRHDPNQP-----------PMMINDYTDPGAN-------PRHDPNQPP----MMINDYADPRA

Query:  N-------PRHDPNQPP----MMINDYADPGAN-------PRHDPNQPP----MMINDYTDPGANPRHDPNQP---PPPSPRRFEVRTTNGHIS
        N       P+  P  PP     +INDY+DPG N       P+  P  PP     +INDY+DPG NP   P  P   PPP P        N HIS
Subjt:  N-------PRHDPNQPP----MMINDYADPGAN-------PRHDPNQPP----MMINDYTDPGANPRHDPNQP---PPPSPRRFEVRTTNGHIS

A0A6J1GAA0 extensin-like isoform X11.3e-1739.8Show/hide
Query:  LTLFLSFALITAARLTPH--SEKQDTAIMIKDYTDPGANPRHDPNQP-----------PMMINDYTDPGAN-------PRHDPNQPP----MMINDYADP
        L   LSFAL+++AR+     S KQ T I+I DY+DPG NP   P  P           P  INDY+DPG N       P+  P  PP     +INDY+DP
Subjt:  LTLFLSFALITAARLTPH--SEKQDTAIMIKDYTDPGANPRHDPNQP-----------PMMINDYTDPGAN-------PRHDPNQPP----MMINDYADP

Query:  RAN-------PRHDPNQPP----MMINDYADPGAN-------PRHDPNQPP----MMINDYTDPGANPRHDPNQP---PPPSPRRFEVRTTNGHIS
          N       P+  P  PP     +INDY+DPG N       P+  P  PP     +INDY+DPG NP   P  P   PPP P        N HIS
Subjt:  RAN-------PRHDPNQPP----MMINDYADPGAN-------PRHDPNQPP----MMINDYTDPGANPRHDPNQP---PPPSPRRFEVRTTNGHIS

A0A7J6FET4 Uncharacterized protein6.0e-2041.18Show/hide
Query:  RLTPHSEKQDTAIMIKDYTDPGANPRHDPNQPPMMIN-------DYTDPGANPRHDPNQPP------MMINDYADPRANPRHDP------NQPPMMINDY
        +L P     +  + I+DY DPG+NPRH  + PP+M N       DY   G NPRH P+ PP      + + DYADP  NPRH P      N+  + I DY
Subjt:  RLTPHSEKQDTAIMIKDYTDPGANPRHDPNQPPMMIN-------DYTDPGANPRHDPNQPP------MMINDYADPRANPRHDP------NQPPMMINDY

Query:  ADPGANPRHDPNQPPMMIN-------DYTDPGANPRHDPNQPPPPSPRRFEVR
        ADPG+NPRH  + PP+M N       DY   G NPRH P+ PP  +  +  V+
Subjt:  ADPGANPRHDPNQPPMMIN-------DYTDPGANPRHDPNQPPPPSPRRFEVR

A0A7J6FEU1 Uncharacterized protein4.0e-1639.86Show/hide
Query:  IMIKDYTDPGANPRHDP------NQPPMMINDYTDPGANPRHD-------------PNQPP------MMINDYADPRANPRHDP------NQPPMMINDY
        + ++DY DP  NPRH P      N+  + I DY DPG+NPRH              P+ PP      + + DYA+P  NPRH P      N+  + I DY
Subjt:  IMIKDYTDPGANPRHDP------NQPPMMINDYTDPGANPRHD-------------PNQPP------MMINDYADPRANPRHDP------NQPPMMINDY

Query:  ADPGANPRHDPNQPPMMIN-------DYTDPGANPRHDPNQPP
         DPG+NPRH  + PP+M N       DY   G NPRH P+ PP
Subjt:  ADPGANPRHDPNQPPMMIN-------DYTDPGANPRHDPNQPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTTCTTTCACTTCACATCCCCATTACCAATTTTCAAACAAAGGCAAAGGAACAATAACATGGATTATTTCGAAGCTCGTCTTACCCTCTTCCTCTCATTTGCTCT
CATCACTGCAGCTCGACTCACGCCCCATTCAGAAAAACAAGACACGGCGATTATGATAAAGGACTATACTGATCCAGGAGCTAATCCAAGACATGATCCAAACCAACCGC
CAATGATGATAAATGATTATACTGATCCAGGAGCTAATCCAAGACATGACCCAAACCAGCCGCCAATGATGATAAATGACTATGCTGATCCAAGAGCTAATCCAAGACAT
GATCCAAACCAACCGCCAATGATGATAAATGATTATGCTGATCCAGGAGCTAATCCAAGACATGATCCAAACCAACCGCCAATGATGATAAATGACTATACTGATCCAGG
AGCTAATCCAAGACATGATCCAAATCAGCCGCCTCCACCTTCGCCTCGACGATTTGAGGTTAGAACTACCAATGGCCACATTAGCAGAAATCTCTAA
mRNA sequenceShow/hide mRNA sequence
TGGAAACTTCATAACTTTCCATCTATTTTCGTTGAACCCTTCCTTCAATTTGCCAGTTTCAACAGAATAAAACCTTCGTATATAGTTTTTTCATCTTTTTATGTAAATAT
ATATGGACTTCTTTCACTTCACATCCCCATTACCAATTTTCAAACAAAGGCAAAGGAACAATAACATGGATTATTTCGAAGCTCGTCTTACCCTCTTCCTCTCATTTGCT
CTCATCACTGCAGCTCGACTCACGCCCCATTCAGAAAAACAAGACACGGCGATTATGATAAAGGACTATACTGATCCAGGAGCTAATCCAAGACATGATCCAAACCAACC
GCCAATGATGATAAATGATTATACTGATCCAGGAGCTAATCCAAGACATGACCCAAACCAGCCGCCAATGATGATAAATGACTATGCTGATCCAAGAGCTAATCCAAGAC
ATGATCCAAACCAACCGCCAATGATGATAAATGATTATGCTGATCCAGGAGCTAATCCAAGACATGATCCAAACCAACCGCCAATGATGATAAATGACTATACTGATCCA
GGAGCTAATCCAAGACATGATCCAAATCAGCCGCCTCCACCTTCGCCTCGACGATTTGAGGTTAGAACTACCAATGGCCACATTAGCAGAAATCTCTAAAAATTTCTGCA
TGCTAGAAGAGGAGGACAGACGAGAAAACTTAAAAGAATTAATAGTGTGCATATGAACGATAATAGTACTATACAAATGTTATATTATTGATGGAAATAAATCCATTTGT
GTGTTGAGAATGGAATAATATGTATTTTAAATGTAATGAATGAACAAAAGTAGTATATGGTAATGAACAAGAATGAAATTTTTGTTCTCCCTCTAATTTGGTAACACATA
TATGTTAA
Protein sequenceShow/hide protein sequence
MDFFHFTSPLPIFKQRQRNNNMDYFEARLTLFLSFALITAARLTPHSEKQDTAIMIKDYTDPGANPRHDPNQPPMMINDYTDPGANPRHDPNQPPMMINDYADPRANPRH
DPNQPPMMINDYADPGANPRHDPNQPPMMINDYTDPGANPRHDPNQPPPPSPRRFEVRTTNGHISRNL