; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G013080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G013080
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSerine/arginine-rich splicing factor SR45a-like
Genome locationchr02:17502573..17505727
RNA-Seq ExpressionLsi02G013080
SyntenyLsi02G013080
Gene Ontology termsGO:0048026 - positive regulation of mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031790.1 serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa]1.5e-10986.45Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+TRRELEKHFSAEG VLDVHLVADPLTRESRGFGFITM+SNDEAENCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI

Query:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGRIATLLGVLPATLHIGEALAALLIIHLTVAGVDPIPSIDTVDHMVPHTTIDRALIAGKDMI
        KYLNRSVLEGR+ITVEKARRRRGRTPTPGRYLGLRTVHGR AT L VLPATLHIGEALAALLIIHLTVAGVDP+PS D VDHMVP T +D  LIAG+DMI
Subjt:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGRIATLLGVLPATLHIGEALAALLIIHLTVAGVDPIPSIDTVDHMVPHTTIDRALIAGKDMI

Query:  LQ----------TIGIISHIPDPAHRIVGGVATGHTHLMIIIPLILTIEGT
        L           TIGII HI DPAHRI GG ATGHTHLMI IPLILT EGT
Subjt:  LQ----------TIGIISHIPDPAHRIVGGVATGHTHLMIIIPLILTIEGT

KAG7036969.1 Serine/arginine-rich splicing factor SR45a [Cucurbita argyrosperma subsp. argyrosperma]8.4e-8154.96Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS R+TRRELEKHFSAEG VLDVHLV DP TRESRGFGFITM+SNDEAE CI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI

Query:  KYLNRSVLEGRVITVEK----------------ARRRRGRTPTPGRYLGLRTVHGRIATLLGVLPATLHIGEALAALLIIHLTVAGVDPIPSIDTVDHMV
        KYLNRSVLEGR+ITVEK                ARRRRGRTPTPGRY GLRTV                                G DPI  ID  D M 
Subjt:  KYLNRSVLEGRVITVEK----------------ARRRRGRTPTPGRYLGLRTVHGRIATLLGVLPATLHIGEALAALLIIHLTVAGVDPIPSIDTVDHMV

Query:  PHTT-IDRA-LIAGKDMILQTIGIISHIPDPAHRIVG----------------------GVATGHTHLMIIIPLILTIEGT-------------------
         HTT ID   LIA +DMIL TIG+I  I D    +VG                      G  TG THL  I PLI T EGT                   
Subjt:  PHTT-IDRA-LIAGKDMILQTIGIISHIPDPAHRIVG----------------------GVATGHTHLMIIIPLILTIEGT-------------------

Query:  -----------VPPGNR--GEVIHVAFPPNEAGDQAAAIHTVFLLNEAGAQGVALAAIPQNDIATSLMRAHMGEGILVGVDREVEVWLQGLSV
                    P G     EVIH  FP NEAGD + AIHTV LLNE GA+GVALAAI Q  I          E ILVG    VE WLQGL V
Subjt:  -----------VPPGNR--GEVIHVAFPPNEAGDQAAAIHTVFLLNEAGAQGVALAAIPQNDIATSLMRAHMGEGILVGVDREVEVWLQGLSV

TYJ97341.1 serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa]3.3e-10986.06Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+TRRELEKHFSAEG VLDVHL+ADPLTRESRGFGFITM+SNDEAENCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI

Query:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGRIATLLGVLPATLHIGEALAALLIIHLTVAGVDPIPSIDTVDHMVPHTTIDRALIAGKDMI
        KYLNRSVLEGR+ITVEKARRRRGRTPTPGRYLGLRTVHGR AT L VLPATLHIGEALAALLIIHLTVAGVDP+PS D VDHMVP T +D  LIAG+DMI
Subjt:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGRIATLLGVLPATLHIGEALAALLIIHLTVAGVDPIPSIDTVDHMVPHTTIDRALIAGKDMI

Query:  LQ----------TIGIISHIPDPAHRIVGGVATGHTHLMIIIPLILTIEGT
        L           TIGII HI DPAHRI GG ATGHTHLMI IPLILT EGT
Subjt:  LQ----------TIGIISHIPDPAHRIVGGVATGHTHLMIIIPLILTIEGT

XP_004145262.1 serine/arginine-rich splicing factor SR45a [Cucumis sativus]2.0e-6696.43Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+TRRELEKHFSAEG VLDVHLVADPLTRESRGFGFITM+SNDEAENCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI

Query:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGR
        KYLNRSVLEGR+ITVEKARRRRGRTPTPGRYLGLRTVHGR
Subjt:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGR

XP_008457405.1 PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo]5.0e-6595Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+TRRELEKHFSAEG VLDVHL+ADPLTRESRGFGFITM+SNDEAENCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI

Query:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGR
        KYLNRSVLEGR+ITVEKARRRRGRTPTPGRYLGLRTVH R
Subjt:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGR

TrEMBL top hitse value%identityAlignment
A0A0A0LXJ6 RRM domain-containing protein9.8e-6796.43Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+TRRELEKHFSAEG VLDVHLVADPLTRESRGFGFITM+SNDEAENCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI

Query:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGR
        KYLNRSVLEGR+ITVEKARRRRGRTPTPGRYLGLRTVHGR
Subjt:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGR

A0A1S3C508 serine/arginine-rich splicing factor SR45a-like2.4e-6595Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+TRRELEKHFSAEG VLDVHL+ADPLTRESRGFGFITM+SNDEAENCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI

Query:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGR
        KYLNRSVLEGR+ITVEKARRRRGRTPTPGRYLGLRTVH R
Subjt:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGR

A0A5A7SM07 Serine/arginine-rich splicing factor SR45a-like7.1e-11086.45Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+TRRELEKHFSAEG VLDVHLVADPLTRESRGFGFITM+SNDEAENCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI

Query:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGRIATLLGVLPATLHIGEALAALLIIHLTVAGVDPIPSIDTVDHMVPHTTIDRALIAGKDMI
        KYLNRSVLEGR+ITVEKARRRRGRTPTPGRYLGLRTVHGR AT L VLPATLHIGEALAALLIIHLTVAGVDP+PS D VDHMVP T +D  LIAG+DMI
Subjt:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGRIATLLGVLPATLHIGEALAALLIIHLTVAGVDPIPSIDTVDHMVPHTTIDRALIAGKDMI

Query:  LQ----------TIGIISHIPDPAHRIVGGVATGHTHLMIIIPLILTIEGT
        L           TIGII HI DPAHRI GG ATGHTHLMI IPLILT EGT
Subjt:  LQ----------TIGIISHIPDPAHRIVGGVATGHTHLMIIIPLILTIEGT

A0A5D3BFE7 Serine/arginine-rich splicing factor SR45a-like1.6e-10986.06Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+TRRELEKHFSAEG VLDVHL+ADPLTRESRGFGFITM+SNDEAENCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI

Query:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGRIATLLGVLPATLHIGEALAALLIIHLTVAGVDPIPSIDTVDHMVPHTTIDRALIAGKDMI
        KYLNRSVLEGR+ITVEKARRRRGRTPTPGRYLGLRTVHGR AT L VLPATLHIGEALAALLIIHLTVAGVDP+PS D VDHMVP T +D  LIAG+DMI
Subjt:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGRIATLLGVLPATLHIGEALAALLIIHLTVAGVDPIPSIDTVDHMVPHTTIDRALIAGKDMI

Query:  LQ----------TIGIISHIPDPAHRIVGGVATGHTHLMIIIPLILTIEGT
        L           TIGII HI DPAHRI GG ATGHTHLMI IPLILT EGT
Subjt:  LQ----------TIGIISHIPDPAHRIVGGVATGHTHLMIIIPLILTIEGT

A0A6J1D9V3 serine/arginine-rich splicing factor SR45a-like isoform X15.5e-6291.43Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI
        MSYSR+SRYSRSPSY+RS+SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+TRRELEKHFSAEG VLDVHLVADP TRESRGFGFITM+SN+EAE CI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI

Query:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGR
        KYLNRSVLEGR+ITVEKARRRRGRTPTPGRYLGLRTV  R
Subjt:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGR

SwissProt top hitse value%identityAlignment
P62995 Transformer-2 protein homolog beta8.6e-1241.67Show/hide
Query:  RSRYSRSPSYKRSVSRSLSRS----RSRSRSPSS-------DVENPGNN--LYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMAS
        RSR SRS S++RS SRS SR      S S SP S       +  NP  N  L V GLS   T R+L + FS  G + DV +V D  +R SRGF F+   +
Subjt:  RSRYSRSPSYKRSVSRSLSRS----RSRSRSPSS-------DVENPGNN--LYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMAS

Query:  NDEAENCIKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRT
         D+A+   +  N   L+GR I V+ +  +R  TPTPG Y+G  T
Subjt:  NDEAENCIKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRT

P62996 Transformer-2 protein homolog beta8.6e-1241.67Show/hide
Query:  RSRYSRSPSYKRSVSRSLSRS----RSRSRSPSS-------DVENPGNN--LYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMAS
        RSR SRS S++RS SRS SR      S S SP S       +  NP  N  L V GLS   T R+L + FS  G + DV +V D  +R SRGF F+   +
Subjt:  RSRYSRSPSYKRSVSRSLSRS----RSRSRSPSS-------DVENPGNN--LYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMAS

Query:  NDEAENCIKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRT
         D+A+   +  N   L+GR I V+ +  +R  TPTPG Y+G  T
Subjt:  NDEAENCIKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRT

Q10422 Uncharacterized RNA-binding protein C25G10.018.9e-1738.6Show/hide
Query:  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCIKYLNRSVLEGRVITVEKAR
        + S +  +   +S     EN GN+L+V+G++ R+   EL++ FS  G V  V ++ +P+T+ SRGFGF++ ++ +EA + I  LN     GRV+ V+KA+
Subjt:  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCIKYLNRSVLEGRVITVEKAR

Query:  RRRGRTPTPGRYLG
        R R  +PTPG+Y+G
Subjt:  RRRGRTPTPGRYLG

Q3ZBT6 Transformer-2 protein homolog beta8.6e-1241.67Show/hide
Query:  RSRYSRSPSYKRSVSRSLSRS----RSRSRSPSS-------DVENPGNN--LYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMAS
        RSR SRS S++RS SRS SR      S S SP S       +  NP  N  L V GLS   T R+L + FS  G + DV +V D  +R SRGF F+   +
Subjt:  RSRYSRSPSYKRSVSRSLSRS----RSRSRSPSS-------DVENPGNN--LYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMAS

Query:  NDEAENCIKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRT
         D+A+   +  N   L+GR I V+ +  +R  TPTPG Y+G  T
Subjt:  NDEAENCIKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRT

Q84TH4 Serine/arginine-rich splicing factor SR45a1.0e-4472.03Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS RVT R+LE HF+ EG V DVHLV DP TRESRGFGFI+M S  +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAE

Query:  NCIKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGR
         CI+ L+ SVL+GRVITVEKARRRRGRTPTPG+YLGLRT  GR
Subjt:  NCIKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGR

Arabidopsis top hitse value%identityAlignment
AT1G07350.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.2e-4672.03Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS RVT R+LE HF+ EG V DVHLV DP TRESRGFGFI+M S  +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAE

Query:  NCIKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGR
         CI+ L+ SVL+GRVITVEKARRRRGRTPTPG+YLGLRT  GR
Subjt:  NCIKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVHGR

AT1G07350.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-3369.17Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS RVT R+LE HF+ EG V DVHLV DP TRESRGFGFI+M S  +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAE

Query:  NCIKYLNRSVLEGRVITVEK
         CI+ L+ SVL+GRVITVEK
Subjt:  NCIKYLNRSVLEGRVITVEK

AT4G35785.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.7e-3763.7Show/hide
Query:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCIK
        S SR    SRS S  R VS S SR RSRSRS  S+VENPG  LYVTGLS RVT ++LE HF+ EG V    LV +P TR SRGF F+TM+S  +AE CIK
Subjt:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCIK

Query:  YLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRT
        YLN+SVLEGR ITVE++RR+R RTPTPG YLGL++
Subjt:  YLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRT

AT4G35785.2 RNA-binding (RRM/RBD/RNP motifs) family protein6.7e-3663.24Show/hide
Query:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI
        S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS RVT ++LE HF+ EG V    LV +P TR SRGF F+TM+S  +AE CI
Subjt:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI

Query:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRT
        KYLN+SVLEGR ITVE++RR+R RTPTPG YLGL++
Subjt:  KYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRT

AT4G35785.3 RNA-binding (RRM/RBD/RNP motifs) family protein8.8e-2862.39Show/hide
Query:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI
        S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS RVT ++LE HF+ EG V    LV +P TR SRGF F+TM+S  +AE CI
Subjt:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCI

Query:  KYLNRSVLEGRVITVEK
        KYLN+SVLEGR ITVE+
Subjt:  KYLNRSVLEGRVITVEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATACTCCCGAAGGTCTAGGTATTCCCGCTCTCCATCATACAAACGATCGGTCTCAAGGTCCTTGTCGAGGTCAAGGAGCCGTTCAAGGAGCCCTTCAAGTGATGT
TGAAAATCCCGGGAACAATTTGTACGTCACTGGGTTGTCACCTAGAGTGACAAGACGAGAACTCGAGAAGCATTTTTCTGCCGAGGGAATGGTGCTAGATGTTCATCTTG
TGGCCGATCCGTTGACTAGAGAGTCTCGTGGATTTGGATTCATTACCATGGCTAGTAATGATGAGGCGGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGT
CGTGTAATTACTGTGGAAAAGGCTCGAAGACGGAGAGGTAGAACTCCAACTCCCGGGAGATATCTTGGACTTAGAACAGTTCATGGTCGCATAGCTACTCTTCTCGGTGT
TCTCCCAGCTACTCTCCATATAGGAGAAGCTCTAGCCGCTCTACTCATTATTCATCTGACCGTAGCAGGAGTAGATCCCATTCCGTCGATCGACACCGTAGATCATATGG
TTCCCCATACCACTATAGATCGTGCTCTTATAGCCGGCAAAGATATGATTCTCCAGACTATAGGCATCATAAGTCATATTCCCGATCCCGCTCACCGTATCGTAGGTGGA
GTCGCGACAGGTCATACTCACCTTATGATAATTATTCCCCTGATCCTTACTATAGAAGGCACAGTCCCTCCCGGGAATCGAGGAGAAGTTATTCACGTAGCATTTCCCCC
GAACGAAGCAGGAGATCAGGCAGCAGCTATTCATACAGTGTTTCTCCTGAACGAAGCAGGAGCTCAAGGAGTCGCTCTTGCAGCCATACCCCAAAACGACATAGCTACAA
GTCTTATGAGAGCACACATGGGAGAGGGTATTCTGGTAGGAGTCGATCGAGAAGTCGAAGTGTGGCTTCAAGGTCTTTCAGTCTATTCTTTTGTGAACGACGATGCAGAA
ACTAAGTGCCAGCCGGATGCCTTTGTGTTTGAGATGGTGGTTGTGGAATAA
mRNA sequenceShow/hide mRNA sequence
TTTTAAATTGCATTCTATTGTGATTTGGCGTCCGATGCTCTAGAAACTTCTCTCGCCTCGAGGATTTATATAACGGTTTTCGTACACAAAATCTCTTCTAATGCGTCTTA
CATCTATTATGCGAGCCTGAGAGCTAGCGATTGTTGCCGCGAATCTCCGTTCTGTAGGCCGCCGTGATTGTGTGAGAATTTAGAGGAACACTCGGGTTATCTTTAGCTTT
GATTTGGGTTTTGCCTTCGCTGATTTGCAATGTCATACTCCCGAAGGTCTAGGTATTCCCGCTCTCCATCATACAAACGATCGGTCTCAAGGTCCTTGTCGAGGTCAAGG
AGCCGTTCAAGGAGCCCTTCAAGTGATGTTGAAAATCCCGGGAACAATTTGTACGTCACTGGGTTGTCACCTAGAGTGACAAGACGAGAACTCGAGAAGCATTTTTCTGC
CGAGGGAATGGTGCTAGATGTTCATCTTGTGGCCGATCCGTTGACTAGAGAGTCTCGTGGATTTGGATTCATTACCATGGCTAGTAATGATGAGGCGGAAAATTGCATCA
AATATCTGAATCGATCTGTACTTGAAGGTCGTGTAATTACTGTGGAAAAGGCTCGAAGACGGAGAGGTAGAACTCCAACTCCCGGGAGATATCTTGGACTTAGAACAGTT
CATGGTCGCATAGCTACTCTTCTCGGTGTTCTCCCAGCTACTCTCCATATAGGAGAAGCTCTAGCCGCTCTACTCATTATTCATCTGACCGTAGCAGGAGTAGATCCCAT
TCCGTCGATCGACACCGTAGATCATATGGTTCCCCATACCACTATAGATCGTGCTCTTATAGCCGGCAAAGATATGATTCTCCAGACTATAGGCATCATAAGTCATATTC
CCGATCCCGCTCACCGTATCGTAGGTGGAGTCGCGACAGGTCATACTCACCTTATGATAATTATTCCCCTGATCCTTACTATAGAAGGCACAGTCCCTCCCGGGAATCGA
GGAGAAGTTATTCACGTAGCATTTCCCCCGAACGAAGCAGGAGATCAGGCAGCAGCTATTCATACAGTGTTTCTCCTGAACGAAGCAGGAGCTCAAGGAGTCGCTCTTGC
AGCCATACCCCAAAACGACATAGCTACAAGTCTTATGAGAGCACACATGGGAGAGGGTATTCTGGTAGGAGTCGATCGAGAAGTCGAAGTGTGGCTTCAAGGTCTTTCAG
TCTATTCTTTTGTGAACGACGATGCAGAAACTAAGTGCCAGCCGGATGCCTTTGTGTTTGAGATGGTGGTTGTGGAATAA
Protein sequenceShow/hide protein sequence
MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTRRELEKHFSAEGMVLDVHLVADPLTRESRGFGFITMASNDEAENCIKYLNRSVLEG
RVITVEKARRRRGRTPTPGRYLGLRTVHGRIATLLGVLPATLHIGEALAALLIIHLTVAGVDPIPSIDTVDHMVPHTTIDRALIAGKDMILQTIGIISHIPDPAHRIVGG
VATGHTHLMIIIPLILTIEGTVPPGNRGEVIHVAFPPNEAGDQAAAIHTVFLLNEAGAQGVALAAIPQNDIATSLMRAHMGEGILVGVDREVEVWLQGLSVYSFVNDDAE
TKCQPDAFVFEMVVVE