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Lsi02G013160 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G013160
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA-directed RNA polymerases I and III subunit RPAC2
Genome locationchr02:17606864..17610490
RNA-Seq ExpressionLsi02G013160
SyntenyLsi02G013160
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain
IPR033898 - DNA-directed RNA polymerases I and III subunit AC19
IPR036603 - RNA polymerase, RBP11-like subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652742.1 hypothetical protein Csa_014245 [Cucumis sativus]4.0e-4792.31Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD
        MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNL+VVCQHVRNTFDKAV D+KL N V D
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD

Query:  INIK
        INIK
Subjt:  INIK

KAG7036964.1 DNA-directed RNA polymerases I and III subunit RPAC2, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-4589.42Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD
        MEHGSFTDE+KSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNL+ VCQHVRNT DKAV D KL   VGD
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD

Query:  INIK
        INIK
Subjt:  INIK

XP_004147276.2 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus]4.0e-4792.31Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD
        MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNL+VVCQHVRNTFDKAV D+KL N V D
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD

Query:  INIK
        INIK
Subjt:  INIK

XP_023522054.1 DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp. pepo]7.6e-4690.38Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD
        MEHGSFTDETKSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNL+ VCQHVRNT DKAV D KL   VGD
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD

Query:  INIK
        INIK
Subjt:  INIK

XP_038893936.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida]2.1e-4895.19Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNL+VVCQHVRNTFDKAV DIKL   VGD
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD

Query:  INIK
        INIK
Subjt:  INIK

TrEMBL top hitse value%identityAlignment
A0A0A0LUT5 RNA_pol_L_2 domain-containing protein2.0e-4792.31Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD
        MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNL+VVCQHVRNTFDKAV D+KL N V D
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD

Query:  INIK
        INIK
Subjt:  INIK

A0A1S3C5G1 DNA-directed RNA polymerases I and III subunit RPAC27.0e-4587.96Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNT---
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNL+VVCQHVRNTFDKAV D  L      
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNT---

Query:  -VGDINIK
          GDINI+
Subjt:  -VGDINIK

A0A6J1D9Q8 DNA-directed RNA polymerases I and III subunit RPAC21.1e-4589.42Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD
        MEHGSF+DE+KSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD AREVLKD+CQNL+VVCQHVRNTFDK+V D KL   VGD
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD

Query:  INIK
        INIK
Subjt:  INIK

A0A6J1G901 DNA-directed RNA polymerases I and III subunit RPAC21.1e-4589.42Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD
        MEHGSFTDE+KSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNL+ VCQHVRNT DKAV D KL   VGD
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD

Query:  INIK
        INIK
Subjt:  INIK

A0A6J1KDK3 DNA-directed RNA polymerases I and III subunit RPAC21.1e-4589.42Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD
        MEHGSFTDE+KSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNL+ VCQHVRNT DKAV D KL   VGD
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV-DIKLNNTVGD

Query:  INIK
        INIK
Subjt:  INIK

SwissProt top hitse value%identityAlignment
P0DPB6 DNA-directed RNA polymerases I and III subunit RPAC24.2e-1542.22Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLIVVCQHVRNTFDKAV
        M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G  PA E  +     L+ VCQHV + F+ ++
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLIVVCQHVRNTFDKAV

P28000 DNA-directed RNA polymerases I and III subunit RPAC21.5e-1545.78Show/hide
Query:  DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLIVVCQHVRNTFDKAV
        D T ++F + +EDHTL NALRY + ++P V FCGYSIPHPS+N +NIR+QT G+  A + L+   ++L+ +C  V + F + +
Subjt:  DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLIVVCQHVRNTFDKAV

Q54ES6 DNA-directed RNA polymerases I and III subunit rpc191.1e-1548.75Show/hide
Query:  STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLIVVCQHVRNTFDKAVD
        +TF   DEDHTL NAL Y L ++P+V F GYSIPHPSDNR+N+R+QT  +  A+E L     ++  + +H+  TF+ A+D
Subjt:  STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLIVVCQHVRNTFDKAVD

Q5XK67 DNA-directed RNA polymerases I and III subunit RPAC25.9e-1748.19Show/hide
Query:  DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLIVVCQHVRNTFDKAV
        +E+  TF + +EDHTL N+LRY + ++P V FCGYSI HPS+ ++N R+QT  G PA E  +     L+ VCQHV NTF+ ++
Subjt:  DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLIVVCQHVRNTFDKAV

Q6DRI4 DNA-directed RNA polymerases I and III subunit RPAC21.1e-1550Show/hide
Query:  DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLIVVCQHVRNTFD
        DE   TF + +EDHTL N+LRY + +   V FCGYSI HPS++++N R+QT  G PA E L++   NL  VC+HV  TF+
Subjt:  DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLIVVCQHVRNTFD

Arabidopsis top hitse value%identityAlignment
AT2G29540.1 RNApolymerase 14 kDa subunit4.3e-3167.42Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV
        MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ L+ + +HVR+ FDKAV
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV

AT2G29540.2 RNApolymerase 14 kDa subunit4.3e-3167.42Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV
        MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ L+ + +HVR+ FDKAV
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV

AT2G29540.3 RNApolymerase 14 kDa subunit4.7e-1770.91Show/hide
Query:  PRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV
        PRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ L+ + +HVR+ FDKAV
Subjt:  PRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAV

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like8.8e-0830Show/hide
Query:  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPA-REVLKDACQNLIVVCQHVRNTFDKAV
        S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R+ TT   +  +    A  +L     +++N F+  V
Subjt:  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPA-REVLKDACQNLIVVCQHVRNTFDKAV

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like1.8e-0536.36Show/hide
Query:  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVV
        S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R     DP     KD  +NL VV
Subjt:  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCAATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGATCCAAGAGT
GACATTCTGTGGGTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTTCAGACAACAGGTGATCCTGCAAGAGAGGTTTTGAAAGATGCTTGTCAGAACT
TGATAGTGGTGTGCCAGCATGTGAGGAACACATTTGACAAGGCTGTGGATATCAAACTCAACAACACTGTGGGAGACATTAATATCAAATAG
mRNA sequenceShow/hide mRNA sequence
CATTCAGCTCCCTTTTAGTTTTTGTGATCTCTCCCGCCCTCTGTGCTCTCTCCATCCTCCTACAACTCCCCGGCCGGCCGGCCACCGACGGTCGCAACTCGATCTCTTCT
CGTCCTCCTTCTCTCTCTCGCAATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCAATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACA
CTTTGAATCAAGATCCAAGAGTGACATTCTGTGGGTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTTCAGACAACAGGTGATCCTGCAAGAGAGGTT
TTGAAAGATGCTTGTCAGAACTTGATAGTGGTGTGCCAGCATGTGAGGAACACATTTGACAAGGCTGTGGATATCAAACTCAACAACACTGTGGGAGACATTAATATCAA
ATAGAATGGGACCTTTCTTTTTCTTTGGCTTGTAATTTACTTTTTTTTTTCCTTTTGTTCAATACTTATTATAGTTTACAGTTTATTGAGATGGGTTAGTTACTGGCTTT
TGGAACAGATTCATTCCATTGAATTTTGCTTACTTTTACTGTTATTATCTCAACTGATGGCTGATGCCCCTCTCAGGGATTTTACGTTAAATATTAGATATTGTTGATTT
TACATCTTATTAGAAGAAT
Protein sequenceShow/hide protein sequence
MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLIVVCQHVRNTFDKAVDIKLNNTVGDINIK