; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G013280 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G013280
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr02:17769215..17773175
RNA-Seq ExpressionLsi02G013280
SyntenyLsi02G013280
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily
IPR044795 - Pentatricopeptide repeat-containing protein THA8L-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653270.1 hypothetical protein Csa_023162 [Cucumis sativus]3.7e-12892.71Show/hide
Query:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV
        MAIRWFSRSKLPVFASVF++ LTRRPI D+PLP KSTIT  Q DS RP+W FRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEK EKFMKSHV
Subjt:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV

Query:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
         RLLKLDM+AVLGELERQEEVALAVKIFRLIRKQDWY PDV+IYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
Subjt:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDP
        DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHV+DP
Subjt:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDP

XP_004145279.2 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus]3.7e-12892.71Show/hide
Query:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV
        MAIRWFSRSKLPVFASVF++ LTRRPI D+PLP KSTIT  Q DS RP+W FRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEK EKFMKSHV
Subjt:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV

Query:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
         RLLKLDM+AVLGELERQEEVALAVKIFRLIRKQDWY PDV+IYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
Subjt:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDP
        DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHV+DP
Subjt:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDP

XP_008457435.1 PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis melo]7.2e-13292.16Show/hide
Query:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV
        MAIRWFSRSKLP+FA VF+R LTRRPI D+PLP  STITG Q DSSRP+W FRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL KFMKSHV
Subjt:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV

Query:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
         RLLKLDM+AVLGELERQEEVALAVKIFRLIRKQDWY PDV+IYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
Subjt:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR
        DMKKSP+PPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHV+DPPEEIF LR
Subjt:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR

XP_022964699.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata]7.0e-12787.84Show/hide
Query:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV
        MA+RWFS+ KLP+  SVF+R L RRPI DIPLP KST+ G Q DSSRPL  FRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL+KFMK HV
Subjt:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV

Query:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
        LRLLKLDMIAVLGELERQEEVALAVK+FRLI+KQ+WY PDVF+YKDLI+ALARSK+MDDAM+LWESMR+ENLFPDSQTYTEVIRGFL+YGSPSDAMN+YE
Subjt:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR
        DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FPDQHVYDPPEEIFGLR
Subjt:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR

XP_038895593.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida]9.1e-13594.51Show/hide
Query:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV
        MAIRWFSRSKLP+FASVF+R LTRRPI D  LP KSTITG Q DSSRPLW FRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV
Subjt:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV

Query:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
        LRLLKLDMI+VLGELERQEEVALAVKIFRLI+KQDWY PDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMN+YE
Subjt:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR
        DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR
Subjt:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR

TrEMBL top hitse value%identityAlignment
A0A0A0LVE9 Uncharacterized protein9.2e-13392.55Show/hide
Query:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV
        MAIRWFSRSKLPVFASVF++ LTRRPI D+PLP KSTIT  Q DS RP+W FRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEK EKFMKSHV
Subjt:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV

Query:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
         RLLKLDM+AVLGELERQEEVALAVKIFRLIRKQDWY PDV+IYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
Subjt:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR
        DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHV+DPPEEIF LR
Subjt:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR

A0A1S3C5H5 pentatricopeptide repeat-containing protein At3g468703.5e-13292.16Show/hide
Query:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV
        MAIRWFSRSKLP+FA VF+R LTRRPI D+PLP  STITG Q DSSRP+W FRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL KFMKSHV
Subjt:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV

Query:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
         RLLKLDM+AVLGELERQEEVALAVKIFRLIRKQDWY PDV+IYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
Subjt:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR
        DMKKSP+PPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHV+DPPEEIF LR
Subjt:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR

A0A5A7SRJ7 Pentatricopeptide repeat-containing protein3.5e-13292.16Show/hide
Query:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV
        MAIRWFSRSKLP+FA VF+R LTRRPI D+PLP  STITG Q DSSRP+W FRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL KFMKSHV
Subjt:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV

Query:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
         RLLKLDM+AVLGELERQEEVALAVKIFRLIRKQDWY PDV+IYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
Subjt:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR
        DMKKSP+PPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHV+DPPEEIF LR
Subjt:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR

A0A6J1HLK1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic3.4e-12787.84Show/hide
Query:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV
        MA+RWFS+ KLP+  SVF+R L RRPI DIPLP KST+ G Q DSSRPL  FRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL+KFMK HV
Subjt:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV

Query:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
        LRLLKLDMIAVLGELERQEEVALAVK+FRLI+KQ+WY PDVF+YKDLI+ALARSK+MDDAM+LWESMR+ENLFPDSQTYTEVIRGFL+YGSPSDAMN+YE
Subjt:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR
        DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FPDQHVYDPPEEIFGLR
Subjt:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR

A0A6J1I496 protein THYLAKOID ASSEMBLY 8-like, chloroplastic3.4e-12789.02Show/hide
Query:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV
        MA+RWFS+SKLP+  SVF+R LTRRPI DIPLP KSTI G   DSSR L  FRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL+KFMK HV
Subjt:  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHV

Query:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
        LRLLKLDMIAVLGELERQEEVALAVK+FRLI+KQ+W+ PDVFIYKDLI+ALARSKKMDDAM+LWESMR+ENLFPDSQTYTEVIRGFL+YGSPSDAMN+YE
Subjt:  LRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR
        DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR
Subjt:  DMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR

SwissProt top hitse value%identityAlignment
Q1PFH7 Pentatricopeptide repeat-containing protein At1g623501.3e-4646.41Show/hide
Query:  IGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREE
        + KE L   + LKR +    +L++F+ SHV RLLK D+++VL E +RQ +V L +K++ ++R++ WY PD+F Y+D+++ LAR+KK+D+  K+WE +++E
Subjt:  IGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREE

Query:  NLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEI
         +  D  T+ +++RGFL    P +AM +Y +M++SPD P  LPFR++LKGL+P+P LR +VK DF ELFP   VYDPPE+I
Subjt:  NLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEI

Q9FKC3 Pentatricopeptide repeat-containing protein At5g48730, chloroplastic1.4e-0827.95Show/hide
Query:  RSRKAIGKEALFVI---QGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMK
        ++ K   ++A+ +I   +  K   E ++  +K +   VL  L   + A+  E         A+++F L+R+Q WY P+V IY  LI+ L + K+ + A +
Subjt:  RSRKAIGKEALFVI---QGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMK

Query:  LWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPD-PPDELPFRILLKGLL
        L++ M  E    + + YT ++  + R G    A  + E MK S +  PD   + IL+K  L
Subjt:  LWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPD-PPDELPFRILLKGLL

Q9FMQ1 Pentatricopeptide repeat-containing protein At5g12100, mitochondrial2.1e-0936.27Show/hide
Query:  EVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLK
        +V   +++F  + K D   P VFIY  LI  L + K+M+DA +L++ M    L P   TY  +I G+ + G+P  +  V E MK     P  + F  LLK
Subjt:  EVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLK

Query:  GL
        GL
Subjt:  GL

Q9LUR2 Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial3.0e-0832.65Show/hide
Query:  AVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGL
        A ++F L+ +   Y P+  IY  LI    +SK+++D MK++  M ++ +  ++ TYT +I+G+   G P  A  V+  M     PPD   + +LL GL
Subjt:  AVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGL

Q9STF9 Protein THYLAKOID ASSEMBLY 8-like, chloroplastic5.4e-9870.08Show/hide
Query:  AIRWFSRSKLPVFASVFVRCLTRRP-ISDIPLPAKSTITGLQTDSSRPLWVF-RLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSH
        AIR  SR K P FAS+F + +TR P I  I        T L     +P  VF   +HDGRPRGPLWR +K IGKEALFVI GLKR KED+EKL+KF+K+H
Subjt:  AIRWFSRSKLPVFASVFVRCLTRRP-ISDIPLPAKSTITGLQTDSSRPLWVF-RLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSH

Query:  VLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVY
        V RLLKLDM+AV+GELERQEE ALA+K+F +I+KQ+WY PDVF+YKDLI++LA+SK+MD+AM LWE M++ENLFPDSQTYTEVIRGFLR G P+DAMNVY
Subjt:  VLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVY

Query:  EDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFG
        EDM KSPDPP+ELPFR+LLKGLLPHPLLRN+VK+DFEELFP++H YDPPEEIFG
Subjt:  EDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFG

Arabidopsis top hitse value%identityAlignment
AT1G62350.1 Pentatricopeptide repeat (PPR) superfamily protein9.0e-4846.41Show/hide
Query:  IGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREE
        + KE L   + LKR +    +L++F+ SHV RLLK D+++VL E +RQ +V L +K++ ++R++ WY PD+F Y+D+++ LAR+KK+D+  K+WE +++E
Subjt:  IGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREE

Query:  NLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEI
         +  D  T+ +++RGFL    P +AM +Y +M++SPD P  LPFR++LKGL+P+P LR +VK DF ELFP   VYDPPE+I
Subjt:  NLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEI

AT1G77340.1 Pentatricopeptide repeat (PPR) superfamily protein4.4e-1032.04Show/hide
Query:  RQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRI
        R++EV  A K+F+ + +   +  +V  Y  LI  L  +KK+D+A+ L   M+++N  P+ +TYT +I      G  S+AMN+++ M +S   PD+  + +
Subjt:  RQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRI

Query:  LLK
        L++
Subjt:  LLK

AT3G46870.1 Pentatricopeptide repeat (PPR) superfamily protein3.8e-9970.08Show/hide
Query:  AIRWFSRSKLPVFASVFVRCLTRRP-ISDIPLPAKSTITGLQTDSSRPLWVF-RLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSH
        AIR  SR K P FAS+F + +TR P I  I        T L     +P  VF   +HDGRPRGPLWR +K IGKEALFVI GLKR KED+EKL+KF+K+H
Subjt:  AIRWFSRSKLPVFASVFVRCLTRRP-ISDIPLPAKSTITGLQTDSSRPLWVF-RLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSH

Query:  VLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVY
        V RLLKLDM+AV+GELERQEE ALA+K+F +I+KQ+WY PDVF+YKDLI++LA+SK+MD+AM LWE M++ENLFPDSQTYTEVIRGFLR G P+DAMNVY
Subjt:  VLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVY

Query:  EDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFG
        EDM KSPDPP+ELPFR+LLKGLLPHPLLRN+VK+DFEELFP++H YDPPEEIFG
Subjt:  EDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFG

AT5G09320.1 Vacuolar sorting protein 9 (VPS9) domain1.4e-1631.55Show/hide
Query:  VFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKR---------------FKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQD
        V ++    + R PL R R  +  EA+  +Q LKR                      L++ + S   RLLK DM+AVL EL RQ E +LA+K+F  IRK+ 
Subjt:  VFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKR---------------FKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQD

Query:  WYTPDVFIYKDLIIALARSKKMDDAMKLWESMR-EENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGL
        WY P V +Y D+I  +A +  M++   L+ +M+ E+ L  + + +  ++   L +      M+ Y  M+     PD   FR+L+ GL
Subjt:  WYTPDVFIYKDLIIALARSKKMDDAMKLWESMR-EENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGL

AT5G12100.1 pentatricopeptide (PPR) repeat-containing protein1.5e-1036.27Show/hide
Query:  EVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLK
        +V   +++F  + K D   P VFIY  LI  L + K+M+DA +L++ M    L P   TY  +I G+ + G+P  +  V E MK     P  + F  LLK
Subjt:  EVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLK

Query:  GL
        GL
Subjt:  GL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTAAAACGGAAGAAGCAGTTCCACGCCGCCTGGCGTTTCCATTCTCCTCCACGGCTCAGCCATCCGAGGCGGCACCACGTCAAAGGTATTTTTTTTCTTCTCATTCCTAC
TGTTCTTCGTGAAGAATCTTCTCATCCCACTGTGAACTCGGGCGGCAATAATCCGATGGCAATTCGGTGGTTTTCCAGGTCGAAATTGCCCGTTTTTGCGTCGGTATTTG
TACGATGTCTAACGAGGAGACCAATTAGTGATATCCCATTACCAGCGAAATCGACTATTACTGGACTTCAGACGGATTCGAGCCGACCCTTATGGGTATTCCGGCTATAT
CACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCACTTTTCGTTATTCAGGGATTGAAGCGATTCAAGGAAGATGAAGAGAAACT
CGAGAAGTTCATGAAGAGCCATGTTTTGAGGCTCTTGAAATTGGATATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTAGCTGTTAAGATATTTA
GGTTGATTCGAAAACAAGACTGGTACACACCTGATGTTTTTATATATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGACGCAATGAAATTATGGGAA
AGCATGAGAGAGGAGAATTTATTCCCCGACTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAACGTATATGAGGATAT
GAAGAAGTCTCCAGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGCCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGATTTTGAGGAGCTCT
TTCCTGACCAGCATGTGTACGATCCCCCAGAAGAGATATTCGGCCTACGTTGA
mRNA sequenceShow/hide mRNA sequence
CTAAAACGGAAGAAGCAGTTCCACGCCGCCTGGCGTTTCCATTCTCCTCCACGGCTCAGCCATCCGAGGCGGCACCACGTCAAAGGTATTTTTTTTCTTCTCATTCCTAC
TGTTCTTCGTGAAGAATCTTCTCATCCCACTGTGAACTCGGGCGGCAATAATCCGATGGCAATTCGGTGGTTTTCCAGGTCGAAATTGCCCGTTTTTGCGTCGGTATTTG
TACGATGTCTAACGAGGAGACCAATTAGTGATATCCCATTACCAGCGAAATCGACTATTACTGGACTTCAGACGGATTCGAGCCGACCCTTATGGGTATTCCGGCTATAT
CACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCACTTTTCGTTATTCAGGGATTGAAGCGATTCAAGGAAGATGAAGAGAAACT
CGAGAAGTTCATGAAGAGCCATGTTTTGAGGCTCTTGAAATTGGATATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTAGCTGTTAAGATATTTA
GGTTGATTCGAAAACAAGACTGGTACACACCTGATGTTTTTATATATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGACGCAATGAAATTATGGGAA
AGCATGAGAGAGGAGAATTTATTCCCCGACTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAACGTATATGAGGATAT
GAAGAAGTCTCCAGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGCCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGATTTTGAGGAGCTCT
TTCCTGACCAGCATGTGTACGATCCCCCAGAAGAGATATTCGGCCTACGTTGAGGAAAGTGCGAGGAAGAATATTTTTAACCCAAATCTAGTCCTGCTTTCGTCGATGAT
GATGGTTGACGACTAGACGATAAGATTGCTAAAGGAGGGGTTGAAGGAAGAAGAGGTAAGAGAAAGATGAGGAGGATCATGTGAAGGAGAGCAAATAAGTAAACTTTTTT
TTTTAAAAAAAAATTATACTATTATTATTATTATTATTATTTTAAAAGTTTACACATTAGCGTCGAGTTAACGAAGCTGTTAATCGAGTGGTCGAATTGAATTATATCAT
AAACTTTGAAAACTTGATTGTACGACTTTAGAACTTAATGGTATGTTTGGAACCTCATGATTTTGATA
Protein sequenceShow/hide protein sequence
LKRKKQFHAAWRFHSPPRLSHPRRHHVKGIFFLLIPTVLREESSHPTVNSGGNNPMAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLY
HDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWE
SMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR