CuGenDBv2

Gene ID	Lsi02G013290
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Elongin-C
Genome location	chr02:17776870..17778956
RNA-Seq Expression	Lsi02G013290
Synteny	Lsi02G013290
Gene Ontology terms	GO:0006414 - translational elongation (biological process) GO:0006511 - ubiquitin-dependent protein catabolic process (biological process) GO:0070449 - elongin complex (cellular component) GO:0003746 - translation elongation factor activity (molecular function)
InterPro domains	IPR001232 - S-phase kinase-associated protein 1-like IPR011333 - SKP1/BTB/POZ domain superfamily IPR016073 - SKP1 component, POZ domain IPR039948 - Elongin-C

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008457436.1 PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo]

5.0e-47

97.96

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022158132.1 elongin-C [Momordica charantia]

2.3e-47

98.98

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022948640.1 elongin-C-like [Cucurbita moschata]

2.5e-46

96.94

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEKICQYFYW+LQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022964706.1 elongin-C-like [Cucurbita moschata]

1.3e-47

98.98

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_038895699.1 elongin-C [Benincasa hispida]

5.9e-48

100

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LY44 Elongin-C

2.4e-47

97.96

Show/hide

Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A1S3C6T3 Elongin-C

2.4e-47

97.96

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1DWE1 Elongin-C

1.1e-47

98.98

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1HJP6 Elongin-C

6.4e-48

98.98

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1KFM7 Elongin-C

1.2e-46

96.94

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEKICQYFYW+LQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

SwissProt top hits

e value

%identity

Alignment

P83940 Elongin-C

1.3e-18

47.83

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Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL

P83941 Elongin-C

1.3e-18

47.83

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Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q15369 Elongin-C

1.3e-18

47.83

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Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q2KII4 Elongin-C

1.3e-18

47.83

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Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q9USX9 Elongin-C

8.1e-16

43.16

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Query:  KEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKE-TEFPIEPELTLELMMAANYL
        ++E V+LIS +GF F++ K+ A +S TIR +L + G F+E+Q  E TFP+I  T+LEK+C+Y ++N ++ +  +  +F I PE+ LEL++ A YL
Subjt:  KEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKE-TEFPIEPELTLELMMAANYL

Arabidopsis top hits

e value

%identity

Alignment

AT5G59140.1 BTB/POZ domain-containing protein

2.4e-39

81.91

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Query:  ETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        ETVKLIS EGFEFVI ++AAMVSQTIR+MLTSPG F+ES+   VTFP+ISTTILEKICQYFYW+LQ++ GKETEF IEPELTLELMMAANYLHT
Subjt:  ETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

Sequences

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CDS sequence

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ATGAAGAAGGAAGAGACTGTAAAATTGATCAGCGCTGAGGGTTTTGAGTTCGTGATCCACAAAGATGCTGCCATGGTTTCTCAGACGATTCGAAATATGCTTACTTCCCC
AGGAAATTTTGCTGAATCGCAGCACAGAGAAGTGACTTTTCCTGAGATTAGCACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAATTCGCCAGCG
GGAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

mRNA sequence

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TGTGAATGTGATGTCTAAGGAAGACCAAAACTAAGAATCGAAAACTTTTTCTTCAGAGGGAGAGGGAACAAGAATCTCTCTCAATTTCGCAAGATAGTTTAGAGCGAAAT
GAAGAAGGAAGAGACTGTAAAATTGATCAGCGCTGAGGGTTTTGAGTTCGTGATCCACAAAGATGCTGCCATGGTTTCTCAGACGATTCGAAATATGCTTACTTCCCCAG
GAAATTTTGCTGAATCGCAGCACAGAGAAGTGACTTTTCCTGAGATTAGCACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAATTCGCCAGCGGG
AAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGAAATATGTAACCTCTGTGCACTCTTCCACCCATTTG
ACGTTGTAATCAGGTGGCAATTTTATGTGATAGAAATAGATTTCCTTGACTAATAGATTGTCAGTAAAGTTCATTATAATACTTCCCTTGTCTTTTTCTTTTTCTTTTTC
TTTTTTTTTTTTTTT

Protein sequence

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MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

Lsi02G013290 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome