; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G013490 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G013490
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRab5-interacting family protein
Genome locationchr02:18073300..18078625
RNA-Seq ExpressionLsi02G013490
SyntenyLsi02G013490
Gene Ontology termsGO:0006996 - organelle organization (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR010742 - Rab5-interacting protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
APA20171.1 Rab5-interacting family protein [Populus tomentosa]1.5e-2958.82Show/hide
Query:  MKDGKS-IKVNS-----QLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGD-------INHYGIWILCNDIEGRRRR
        MK+GKS  K+N+     Q QHQNGH  P K AKL D E SWDKDQLGDVLHWIRQ VALVCG+LWG+IPL+ G        I+   IW+LCNDI+ RRRR
Subjt:  MKDGKS-IKVNS-----QLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGD-------INHYGIWILCNDIEGRRRR

Query:  IQRSWSSPPGRAVCFHNTV
            +SSPP RA+CF++++
Subjt:  IQRSWSSPPGRAVCFHNTV

KAA0067751.1 Rab5-interacting [Cucumis melo var. makuwa]6.5e-2879.22Show/hide
Query:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL
        MKDGK++KVNSQLQHQNGHLPPFKLA+LFD ETSWDKDQLGDVLHW+RQ+VALVCGLLWGSIPL+       GIW +
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL

XP_008457469.1 PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo]6.5e-2879.22Show/hide
Query:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL
        MKDGK++KVNSQLQHQNGHLPPFKLA+LFD ETSWDKDQLGDVLHW+RQ+VALVCGLLWGSIPL+       GIW +
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL

XP_038895583.1 respirasome Complex Assembly Factor 1-like isoform X1 [Benincasa hispida]2.2e-2881.82Show/hide
Query:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL
        MKDGKS KVNSQLQHQNGHLPPFKLAKLFD ETSWDKDQLGDVLHW+RQ+VALVCGLLWGSIPL+       GIW +
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL

XP_038895585.1 respirasome Complex Assembly Factor 1-like isoform X2 [Benincasa hispida]2.2e-2881.82Show/hide
Query:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL
        MKDGKS KVNSQLQHQNGHLPPFKLAKLFD ETSWDKDQLGDVLHW+RQ+VALVCGLLWGSIPL+       GIW +
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL

TrEMBL top hitse value%identityAlignment
A0A1I9W037 Rab5-interacting family protein7.5e-3058.82Show/hide
Query:  MKDGKS-IKVNS-----QLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGD-------INHYGIWILCNDIEGRRRR
        MK+GKS  K+N+     Q QHQNGH  P K AKL D E SWDKDQLGDVLHWIRQ VALVCG+LWG+IPL+ G        I+   IW+LCNDI+ RRRR
Subjt:  MKDGKS-IKVNS-----QLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGD-------INHYGIWILCNDIEGRRRR

Query:  IQRSWSSPPGRAVCFHNTV
            +SSPP RA+CF++++
Subjt:  IQRSWSSPPGRAVCFHNTV

A0A1S3C692 uncharacterized protein C20orf24 homolog3.1e-2879.22Show/hide
Query:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL
        MKDGK++KVNSQLQHQNGHLPPFKLA+LFD ETSWDKDQLGDVLHW+RQ+VALVCGLLWGSIPL+       GIW +
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL

A0A5A7VQ84 Rab5-interacting3.1e-2879.22Show/hide
Query:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL
        MKDGK++KVNSQLQHQNGHLPPFKLA+LFD ETSWDKDQLGDVLHW+RQ+VALVCGLLWGSIPL+       GIW +
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL

A0A6J1G9S8 uncharacterized protein C20orf24 homolog5.4e-2879.22Show/hide
Query:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL
        MKDGKSIKVNSQLQHQNGHLPPFKLA LFD E SWDKDQLGDVLHW+RQ+VALVCGLLWGS+PL+       GIW +
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL

A0A6J1KGG2 uncharacterized protein C20orf24 homolog5.4e-2879.22Show/hide
Query:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL
        MKDGKSIKVNSQLQHQNGHLPPFKLA LFD E SWDKDQLGDVLHW+RQ+VALVCGLLWGS+PL+       GIW +
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL

SwissProt top hitse value%identityAlignment
Q9BUV8 Respirasome Complex Assembly Factor 17.3e-0636.92Show/hide
Query:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSW-DKDQLGDVLHWIRQAVALVCGLLWGSIPL
        M  G+  +   Q Q  NG L     +K+  ++ +W DKD+  DV++W RQ +A+V G++WG +PL
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSW-DKDQLGDVLHWIRQAVALVCGLLWGSIPL

Q9CQT9 Respirasome Complex Assembly Factor 13.3e-0638.46Show/hide
Query:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSW-DKDQLGDVLHWIRQAVALVCGLLWGSIPL
        M  G+  +   Q Q  NG L     +K+  ++ +W DKD+  DV++W RQ +ALV G++WG +PL
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSW-DKDQLGDVLHWIRQAVALVCGLLWGSIPL

Arabidopsis top hitse value%identityAlignment
AT2G29020.1 Rab5-interacting family protein3.9e-2361.45Show/hide
Query:  MKDGKSIKVNS------QLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL
        MK+GKS K +S      Q+ HQN HL  F  AKLFD+E SWDKDQLGDVLHWIRQ V L+CGLLWG+IPL+       GIW+L
Subjt:  MKDGKSIKVNS------QLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL

AT5G59410.1 Rab5-interacting family protein6.7e-2363.75Show/hide
Query:  MKDGKSIKVN---SQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL
        MK+ KS K+N    Q  HQN HL P KLAKLFD + SWDKDQLGDVLHWIRQ V L+ GLLWGSIPL+       GIWI+
Subjt:  MKDGKSIKVN---SQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQAVALVCGLLWGSIPLILGDINHYGIWIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAGAAAAAACAAAGGCTGGCGGCGGCCATGCGATCGAAGCAGCAAAAAGTTCTTCAGATTGGAAGCGGATTTCATGAAAATTATGGAAATTTAAAATGGAGAGA
TATCTACAGAAAGCCGTCTCCTGAATTTGTTAGCCTTTCCCATCTTCCCTCTGCATTCTCTCCACTGGTTGGCATGAAGGATGGGAAATCGATCAAGGTCAATTCTCAGT
TGCAGCATCAGAACGGTCACTTGCCGCCGTTCAAATTGGCTAAATTGTTCGATACAGAGACTTCATGGGATAAGGATCAACTAGGAGATGTCTTGCATTGGATAAGACAG
GCAGTTGCTCTTGTATGTGGGTTGCTTTGGGGTTCCATACCTCTGATTCTTGGTGATATCAACCACTATGGTATATGGATATTATGCAATGATATTGAAGGTAGACGAAG
AAGAATTCAGAGGTCATGGAGTTCTCCTCCAGGAAGGGCTGTTTGCTTCCATAACACTGTTTCTGTTTGGGACATTTCTGATAATGGTTTCGTCATCGTTCTTGAGATTG
CGCGAAGCATTGGAGGAGATAGGTTTTCTCTAACTCCTGAGATTAAAATATTCGTCAACACCTTCATAAATTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAAGAAAAAACAAAGGCTGGCGGCGGCCATGCGATCGAAGCAGCAAAAAGTTCTTCAGATTGGAAGCGGATTTCATGAAAATTATGGAAATTTAAAATGGAGAGA
TATCTACAGAAAGCCGTCTCCTGAATTTGTTAGCCTTTCCCATCTTCCCTCTGCATTCTCTCCACTGGTTGGCATGAAGGATGGGAAATCGATCAAGGTCAATTCTCAGT
TGCAGCATCAGAACGGTCACTTGCCGCCGTTCAAATTGGCTAAATTGTTCGATACAGAGACTTCATGGGATAAGGATCAACTAGGAGATGTCTTGCATTGGATAAGACAG
GCAGTTGCTCTTGTATGTGGGTTGCTTTGGGGTTCCATACCTCTGATTCTTGGTGATATCAACCACTATGGTATATGGATATTATGCAATGATATTGAAGGTAGACGAAG
AAGAATTCAGAGGTCATGGAGTTCTCCTCCAGGAAGGGCTGTTTGCTTCCATAACACTGTTTCTGTTTGGGACATTTCTGATAATGGTTTCGTCATCGTTCTTGAGATTG
CGCGAAGCATTGGAGGAGATAGGTTTTCTCTAACTCCTGAGATTAAAATATTCGTCAACACCTTCATAAATTTGTAA
Protein sequenceShow/hide protein sequence
MDKKKQRLAAAMRSKQQKVLQIGSGFHENYGNLKWRDIYRKPSPEFVSLSHLPSAFSPLVGMKDGKSIKVNSQLQHQNGHLPPFKLAKLFDTETSWDKDQLGDVLHWIRQ
AVALVCGLLWGSIPLILGDINHYGIWILCNDIEGRRRRIQRSWSSPPGRAVCFHNTVSVWDISDNGFVIVLEIARSIGGDRFSLTPEIKIFVNTFINL