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Lsi02G013580 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G013580
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationchr02:18207574..18208059
RNA-Seq ExpressionLsi02G013580
SyntenyLsi02G013580
Gene Ontology termsGO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067736.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]2.6e-1637.41Show/hide
Query:  GLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGF---REIKTEEIGDCDGRR-----------------------
        G + V+V+C ++I F+F   + YH RLR+ Q  T +  I   + E    ++ A  +      R+  T+     +G                         
Subjt:  GLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGF---REIKTEEIGDCDGRR-----------------------

Query:  CAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFVH
        CAICIE F +EEICGV+E+CGH FH+DC+++WLRIE RCPLCRC VH
Subjt:  CAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFVH

TYJ97407.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]2.6e-1637.41Show/hide
Query:  GLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGF---REIKTEEIGDCDGRR-----------------------
        G + V+V+C ++I F+F   + YH RLR+ Q  T +  I   + E    ++ A  +      R+  T+     +G                         
Subjt:  GLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGF---REIKTEEIGDCDGRR-----------------------

Query:  CAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFVH
        CAICIE F +EEICGV+E+CGH FH+DC+++WLRIE RCPLCRC VH
Subjt:  CAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFVH

XP_022158253.1 RING-H2 finger protein ATL14-like [Momordica charantia]1.1e-3559.35Show/hide
Query:  SPSPPPVPESTRRPNRPPLIHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGFREIKTE
        SPSPPP   +         IH  TFHLT +L +ASG M VAV+CA  IS MF+FHYY   + RV   DTES   P     +TAE+IPA+A + +R    E
Subjt:  SPSPPPVPESTRRPNRPPLIHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGFREIKTE

Query:  EIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFV
        EI DC G RCAICIEGF EEE CGVIENCGHFFHKDCI+RWL+IE RCPLCRC +
Subjt:  EIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFV

XP_022964751.1 RING-H2 finger protein ATL64-like [Cucurbita moschata]2.6e-1659.74Show/hide
Query:  AEETAEEIPAAAEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFV
        AEE A  I    ++ +R+IKT E  D D   CAICIEGF EEEICGV++ CGH FHK CI++WLRI  RCPLCRC +
Subjt:  AEETAEEIPAAAEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFV

XP_031742489.1 RING-H2 finger protein ATL1-like [Cucumis sativus]7.2e-6782.91Show/hide
Query:  MSSPSPPPVPESTRRPNRPPL-IHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGFREI
        MSSPSPPPVPEST RP  PPL IH   FHLT++LTIASGLMLVAVICALMI FMFIFHY YHQRL VV  D ESSQ+ G  AEET+EEIPA+ +MGFREI
Subjt:  MSSPSPPPVPESTRRPNRPPL-IHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGFREI

Query:  KTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFV
        KT EIGDCDGR+CAICIEGFGEEEICGVIENCGHFFH+DCINRWLRIE RCPLCRCFV
Subjt:  KTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFV

TrEMBL top hitse value%identityAlignment
A0A5A7VMH1 RING-H2 finger protein ATL52-like1.3e-1637.41Show/hide
Query:  GLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGF---REIKTEEIGDCDGRR-----------------------
        G + V+V+C ++I F+F   + YH RLR+ Q  T +  I   + E    ++ A  +      R+  T+     +G                         
Subjt:  GLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGF---REIKTEEIGDCDGRR-----------------------

Query:  CAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFVH
        CAICIE F +EEICGV+E+CGH FH+DC+++WLRIE RCPLCRC VH
Subjt:  CAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFVH

A0A5D3BE50 RING-type E3 ubiquitin transferase1.3e-1637.41Show/hide
Query:  GLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGF---REIKTEEIGDCDGRR-----------------------
        G + V+V+C ++I F+F   + YH RLR+ Q  T +  I   + E    ++ A  +      R+  T+     +G                         
Subjt:  GLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGF---REIKTEEIGDCDGRR-----------------------

Query:  CAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFVH
        CAICIE F +EEICGV+E+CGH FH+DC+++WLRIE RCPLCRC VH
Subjt:  CAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFVH

A0A6J1DVK4 RING-H2 finger protein ATL14-like5.4e-3659.35Show/hide
Query:  SPSPPPVPESTRRPNRPPLIHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGFREIKTE
        SPSPPP   +         IH  TFHLT +L +ASG M VAV+CA  IS MF+FHYY   + RV   DTES   P     +TAE+IPA+A + +R    E
Subjt:  SPSPPPVPESTRRPNRPPLIHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGFREIKTE

Query:  EIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFV
        EI DC G RCAICIEGF EEE CGVIENCGHFFHKDCI+RWL+IE RCPLCRC +
Subjt:  EIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFV

A0A6J1DYV0 E3 ubiquitin-protein ligase RING1-like2.1e-1640.57Show/hide
Query:  MSSPSPPPVPESTR--RPNRPPLIHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHYYYHQRLRV----VQEDTES----SQIPGAVAEETAEEIPA
        MS P  PP   S +   P    + H  TF    K+    G   V  IC  +I   FI  Y YH+R+ +    V +D ES    S++   V  E A + P+
Subjt:  MSSPSPPPVPESTR--RPNRPPLIHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHYYYHQRLRV----VQEDTES----SQIPGAVAEETAEEIPA

Query:  AAEMGFRE--------IKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFV
               E        I+ EEI D D R CAIC EGF E+++C VIE CGHFFHKDC+++WL +E  CPLCRCFV
Subjt:  AAEMGFRE--------IKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFV

A0A6J1HJU0 RING-type E3 ubiquitin transferase1.3e-1659.74Show/hide
Query:  AEETAEEIPAAAEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFV
        AEE A  I    ++ +R+IKT E  D D   CAICIEGF EEEICGV++ CGH FHK CI++WLRI  RCPLCRC +
Subjt:  AEETAEEIPAAAEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFV

SwissProt top hitse value%identityAlignment
P0C041 Putative RING-H2 finger protein ATL534.6e-0839.68Show/hide
Query:  EMGFREIKTEEIG-DCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCR
        ++GF ++K  + G   +G  C+IC+  F E+E   ++  C H FH  CI+RWL+    CPLCR
Subjt:  EMGFREIKTEEIG-DCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCR

Q06003 Protein goliath3.9e-0730.77Show/hide
Query:  SKLTIASGLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIEN
        S L   S L +      LMI  +    +YY QR R +Q   + S+   +V ++   +IP       +  K  +  D D   CAICIE +   +   ++  
Subjt:  SKLTIASGLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIEN

Query:  CGHFFHKDCINRWLRIEMRCPLCRCFVHRF
        C H FHK+CI+ WL     CP+C+  V +F
Subjt:  CGHFFHKDCINRWLRIEMRCPLCRCFVHRF

Q8AWW4 E3 ubiquitin-protein ligase RNF1283.5e-0835.9Show/hide
Query:  AEEIPAAAEMGFREIKT-EEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFVHRFL
        AE   A  ++  R IK  +++   DG  CA+CIE +   ++  ++  C HFFHK+CI+ WL     CP+C+C + + L
Subjt:  AEEIPAAAEMGFREIKT-EEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFVHRFL

Q8LGA5 E3 ubiquitin-protein ligase ATL313.0e-0728.1Show/hide
Query:  STRRPNRPPLIHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHYYYHQRLRVV----------QEDTESSQIPGAVAEETAEEIPAAAEMGFREIKT
        S  +P  P   H   +  +  L+ A  +++V VI AL   FM  F  Y       V          +    ++ +   +  ET E  P      + E+KT
Subjt:  STRRPNRPPLIHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHYYYHQRLRVV----------QEDTESSQIPGAVAEETAEEIPAAAEMGFREIKT

Query:  EEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCR
        ++IG      CAIC+  F ++E   ++  C H FH  CI  WL+  + CP+CR
Subjt:  EEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCR

Q9LZJ6 RING-H2 finger protein ATL51.1e-0626.71Show/hide
Query:  HLTSKLTIASGLMLVAVICALM-ISFMFIFHYY------------------YHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGFREIKTEEIGDCD
        H +S+ ++   +ML +VI   + +  +  FH Y                  + + L   ++ T+SS     +     E+IP    +    +KT E     
Subjt:  HLTSKLTIASGLMLVAVICALM-ISFMFIFHYY------------------YHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGFREIKTEEIGDCD

Query:  GRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCR
           C++C+  F E++   V+  CGH FH DCI+ W R    CPLCR
Subjt:  GRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCR

Arabidopsis top hitse value%identityAlignment
AT2G37150.1 RING/U-box superfamily protein2.5e-0939.68Show/hide
Query:  AEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCR
        A M +   +TEE      R+CAIC+E + E+E  G ++ CGH +H  CI +WL ++  CP+C+
Subjt:  AEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCR

AT2G37150.2 RING/U-box superfamily protein2.5e-0939.68Show/hide
Query:  AEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCR
        A M +   +TEE      R+CAIC+E + E+E  G ++ CGH +H  CI +WL ++  CP+C+
Subjt:  AEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCR

AT2G37150.3 RING/U-box superfamily protein2.5e-0939.68Show/hide
Query:  AEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCR
        A M +   +TEE      R+CAIC+E + E+E  G ++ CGH +H  CI +WL ++  CP+C+
Subjt:  AEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCR

AT4G17905.1 RING/U-box superfamily protein3.3e-0939.68Show/hide
Query:  EMGFREIKTEEIG-DCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCR
        ++GF ++K  + G   +G  C+IC+  F E+E   ++  C H FH  CI+RWL+    CPLCR
Subjt:  EMGFREIKTEEIG-DCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCR

AT5G43420.1 RING/U-box superfamily protein7.3e-0943.4Show/hide
Query:  EEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCR
        EE  +   + C++C+  F +EE   +I NC H FH DCI+ WL+    CPLCR
Subjt:  EEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCCCCATCTCCTCCGCCGGTGCCGGAATCCACAAGACGGCCAAATCGGCCGCCGCTGATCCATCCCGGTACGTTTCACCTTACGAGCAAATTAACAATCGCAAG
CGGGTTGATGTTGGTGGCAGTGATTTGTGCTCTAATGATTTCGTTTATGTTCATTTTTCATTATTATTACCATCAGCGACTCAGAGTAGTCCAGGAAGACACCGAATCAA
GCCAAATACCGGGAGCTGTGGCGGAGGAGACGGCGGAGGAAATTCCGGCGGCCGCGGAGATGGGTTTCAGAGAAATTAAAACAGAGGAAATTGGGGATTGTGATGGGAGG
AGGTGTGCGATATGCATTGAGGGATTTGGAGAAGAAGAGATTTGTGGAGTAATTGAGAATTGCGGCCATTTTTTTCATAAGGATTGTATTAATCGGTGGCTTAGAATTGA
GATGCGTTGCCCACTTTGCCGCTGCTTTGTTCATAGGTTTTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCCCCATCTCCTCCGCCGGTGCCGGAATCCACAAGACGGCCAAATCGGCCGCCGCTGATCCATCCCGGTACGTTTCACCTTACGAGCAAATTAACAATCGCAAG
CGGGTTGATGTTGGTGGCAGTGATTTGTGCTCTAATGATTTCGTTTATGTTCATTTTTCATTATTATTACCATCAGCGACTCAGAGTAGTCCAGGAAGACACCGAATCAA
GCCAAATACCGGGAGCTGTGGCGGAGGAGACGGCGGAGGAAATTCCGGCGGCCGCGGAGATGGGTTTCAGAGAAATTAAAACAGAGGAAATTGGGGATTGTGATGGGAGG
AGGTGTGCGATATGCATTGAGGGATTTGGAGAAGAAGAGATTTGTGGAGTAATTGAGAATTGCGGCCATTTTTTTCATAAGGATTGTATTAATCGGTGGCTTAGAATTGA
GATGCGTTGCCCACTTTGCCGCTGCTTTGTTCATAGGTTTTTGTGA
Protein sequenceShow/hide protein sequence
MSSPSPPPVPESTRRPNRPPLIHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGFREIKTEEIGDCDGR
RCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFVHRFL