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Lsi02G013600 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G013600
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type domain-containing protein
Genome locationchr02:18257635..18258072
RNA-Seq ExpressionLsi02G013600
SyntenyLsi02G013600
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067735.1 RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa]1.6e-3654.37Show/hide
Query:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN--
        MSS  ++A  P  P N      D Y  + A+   II+YFI F+ Y++T NN+ +S  +  G    +PA +E       EIVQIEAM FSY+EAK SEN  
Subjt:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN--

Query:  ----DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP
            DDYECVICLN+F+  +KCR MKKCGHIFHRSCIDRWL  ER+CPLCR+CVC+VVKP
Subjt:  ----DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP

KAE8653246.1 hypothetical protein Csa_019623 [Cucumis sativus]1.5e-3166.36Show/hide
Query:  FYYRTR-----NNESE-STSAVAGPMPALQEPEIVQIEAMAFS-YKEAKGSEN-DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLC
        F YR++     NNESE  T  V   +P  +E EIVQIE M FS Y+EAKGSEN DDYECVICLN+F+ G+KC+ MKKCGHIFH SCIDRWL  ER+CPLC
Subjt:  FYYRTR-----NNESE-STSAVAGPMPALQEPEIVQIEAMAFS-YKEAKGSEN-DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLC

Query:  RSCVCIVVKP
        RSCVC+VV P
Subjt:  RSCVCIVVKP

XP_004151032.1 RING-H2 finger protein ATL66 [Cucumis sativus]2.6e-3958.78Show/hide
Query:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESE-STSAVAGPMPALQEPEIVQIEAMAFS-YKEAKGSEN-DDYECVIC
        MS  P++A  P     FE    D +  + A+   II+YF+ F+FY++T NNESE  T  V   +P  +E EIVQIE M FS Y+EAKGSEN DDYECVIC
Subjt:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESE-STSAVAGPMPALQEPEIVQIEAMAFS-YKEAKGSEN-DDYECVIC

Query:  LNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP
        LN+F+ G+KC+ MKKCGHIFH SCIDRWL  ER+CPLCRSCVC+VV P
Subjt:  LNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP

XP_008457571.1 PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo]1.2e-3654.72Show/hide
Query:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN--
        MSS  ++A  P  P N      D Y  + A+   II+YFI F+ Y++T NN+ +S  +  G    +PA +E       EIVQIEAM FSY+EAK SEN  
Subjt:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN--

Query:  ---DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP
           DDYECVICLN+F+  +KCR MKKCGHIFHRSCIDRWL  ER+CPLCR+CVC+VVKP
Subjt:  ---DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP

XP_022998666.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]6.8e-3253.15Show/hide
Query:  FVATPP---ATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAGPMPALQEPEIVQIEAMAFSYKEAKGSENDDYECVICLNQFK
        F A+PP   A    + L  T+  LA+ A+  +IILY I  +F+     +E ES S  AG +P ++EPEIV+IEA  FSY+EA G  +D  EC ICL++F+
Subjt:  FVATPP---ATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAGPMPALQEPEIVQIEAMAFSYKEAKGSENDDYECVICLNQFK

Query:  GGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP
         G+KCR M KCGHIFHR CIDRWL  +R CPLCRSCVC+VV P
Subjt:  GGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP

TrEMBL top hitse value%identityAlignment
A0A0A0LXE1 RING-type domain-containing protein1.2e-3958.78Show/hide
Query:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESE-STSAVAGPMPALQEPEIVQIEAMAFS-YKEAKGSEN-DDYECVIC
        MS  P++A  P     FE    D +  + A+   II+YF+ F+FY++T NNESE  T  V   +P  +E EIVQIE M FS Y+EAKGSEN DDYECVIC
Subjt:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESE-STSAVAGPMPALQEPEIVQIEAMAFS-YKEAKGSEN-DDYECVIC

Query:  LNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP
        LN+F+ G+KC+ MKKCGHIFH SCIDRWL  ER+CPLCRSCVC+VV P
Subjt:  LNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP

A0A1S3C6H7 RING-H2 finger protein ATL66-like5.8e-3754.72Show/hide
Query:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN--
        MSS  ++A  P  P N      D Y  + A+   II+YFI F+ Y++T NN+ +S  +  G    +PA +E       EIVQIEAM FSY+EAK SEN  
Subjt:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN--

Query:  ---DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP
           DDYECVICLN+F+  +KCR MKKCGHIFHRSCIDRWL  ER+CPLCR+CVC+VVKP
Subjt:  ---DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP

A0A5A7VPW6 RING-H2 finger protein ATL66-like7.5e-3754.37Show/hide
Query:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN--
        MSS  ++A  P  P N      D Y  + A+   II+YFI F+ Y++T NN+ +S  +  G    +PA +E       EIVQIEAM FSY+EAK SEN  
Subjt:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN--

Query:  ----DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP
            DDYECVICLN+F+  +KCR MKKCGHIFHRSCIDRWL  ER+CPLCR+CVC+VVKP
Subjt:  ----DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP

A0A5D3BGV5 RING-H2 finger protein ATL66-like5.8e-3754.72Show/hide
Query:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN--
        MSS  ++A  P  P N      D Y  + A+   II+YFI F+ Y++T NN+ +S  +  G    +PA +E       EIVQIEAM FSY+EAK SEN  
Subjt:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAG---PMPALQE------PEIVQIEAMAFSYKEAKGSEN--

Query:  ---DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP
           DDYECVICLN+F+  +KCR MKKCGHIFHRSCIDRWL  ER+CPLCR+CVC+VVKP
Subjt:  ---DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP

A0A6J1KAT3 RING-type E3 ubiquitin transferase3.3e-3253.15Show/hide
Query:  FVATPP---ATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAGPMPALQEPEIVQIEAMAFSYKEAKGSENDDYECVICLNQFK
        F A+PP   A    + L  T+  LA+ A+  +IILY I  +F+     +E ES S  AG +P ++EPEIV+IEA  FSY+EA G  +D  EC ICL++F+
Subjt:  FVATPP---ATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAGPMPALQEPEIVQIEAMAFSYKEAKGSENDDYECVICLNQFK

Query:  GGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP
         G+KCR M KCGHIFHR CIDRWL  +R CPLCRSCVC+VV P
Subjt:  GGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP

SwissProt top hitse value%identityAlignment
Q8RXX9 E3 ubiquitin-protein ligase ATL68.1e-1232.52Show/hide
Query:  LAMTAMLTVIILYFIG-FSFYYRTRNNESESTSAVAGPM-------PALQEPEIVQIEAM-AFSYKEAKGSE--NDDYECVICLNQFKGGEKCRLMKKCG
        +A+  ++ +  L+F+G FS Y+R  +   ++  + AG          A +  ++  +E    F Y + K  +    + EC ICLN+F+  E  RL+ KC 
Subjt:  LAMTAMLTVIILYFIG-FSFYYRTRNNESESTSAVAGPM-------PALQEPEIVQIEAM-AFSYKEAKGSE--NDDYECVICLNQFKGGEKCRLMKKCG

Query:  HIFHRSCIDRWLMAERQCPLCRS
        H+FH  CID WL A   CP+CR+
Subjt:  HIFHRSCIDRWLMAERQCPLCRS

Q940Q4 RING-H2 finger protein ATL131.4e-1130.97Show/hide
Query:  SSLPFVATPP---ATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYY----------RTRNNESESTSAVAGPMPA---LQEPEIVQ--IEAM-AFSYK
        SSLP    PP    +  NF+L S      +  ++ + I++FI    +           R R +  ++ +A+ G +     L +  + Q  I+ +  F YK
Subjt:  SSLPFVATPP---ATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYY----------RTRNNESESTSAVAGPMPA---LQEPEIVQ--IEAM-AFSYK

Query:  EAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRS
           G +N  ++C +CL +F+  +K RL+ KC H FH  CID WL++   CPLCRS
Subjt:  EAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRS

Q9LX93 E3 ubiquitin-protein ligase RING16.2e-1227.95Show/hide
Query:  PPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAG-------------------------PMPALQEPEIVQIEAMAFSYKEA
        PP  PP  EL+             ++ L+ + F + + T+     + S   G                         P   L    I  I  + F  K+ 
Subjt:  PPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAG-------------------------PMPALQEPEIVQIEAMAFSYKEA

Query:  KGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP
        +G   D  EC +CLN+F+  E  RL+ KC H FH +CID WL++ + CPLCR+ V ++ +P
Subjt:  KGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP

Q9M0R7 RING-H2 finger protein ATL393.6e-1235.34Show/hide
Query:  AMLTVIILYFIGFSFYYRTRNNESESTSAVAGPMPALQEPEIVQIEAM----AFSYKEAKGSEN--DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCID
        A +  I  Y I + +  R RN  + +       M   + P  +  EA+    +F Y EA+G E    + ECV+CLN+FK  E  RL+  C H+FH  C+D
Subjt:  AMLTVIILYFIGFSFYYRTRNNESESTSAVAGPMPALQEPEIVQIEAM----AFSYKEAKGSEN--DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCID

Query:  RWLMAERQCPLCRSCV
         WL     CP+CR+ V
Subjt:  RWLMAERQCPLCRSCV

Q9SJJ7 RING-H2 finger protein ATL576.0e-1530.19Show/hide
Query:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIG-FSFYYRTRNNESESTSAVAG--------PMPALQEPEIVQIEAMAFS-----------
        ++S P   TPP  PP    ++ D  +A+T  + ++ L+F+G FS Y+R   + S ST  ++           P      +V     +F            
Subjt:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIG-FSFYYRTRNNESESTSAVAG--------PMPALQEPEIVQIEAMAFS-----------

Query:  --YKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRS
          Y+  K ++  + +CVICL+ F+ GE  +++  CGH+FH  C+D WL +   CPLCRS
Subjt:  --YKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRS

Arabidopsis top hitse value%identityAlignment
AT2G27940.1 RING/U-box superfamily protein4.2e-1630.19Show/hide
Query:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIG-FSFYYRTRNNESESTSAVAG--------PMPALQEPEIVQIEAMAFS-----------
        ++S P   TPP  PP    ++ D  +A+T  + ++ L+F+G FS Y+R   + S ST  ++           P      +V     +F            
Subjt:  MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIG-FSFYYRTRNNESESTSAVAG--------PMPALQEPEIVQIEAMAFS-----------

Query:  --YKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRS
          Y+  K ++  + +CVICL+ F+ GE  +++  CGH+FH  C+D WL +   CPLCRS
Subjt:  --YKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRS

AT3G05200.1 RING/U-box superfamily protein5.7e-1332.52Show/hide
Query:  LAMTAMLTVIILYFIG-FSFYYRTRNNESESTSAVAGPM-------PALQEPEIVQIEAM-AFSYKEAKGSE--NDDYECVICLNQFKGGEKCRLMKKCG
        +A+  ++ +  L+F+G FS Y+R  +   ++  + AG          A +  ++  +E    F Y + K  +    + EC ICLN+F+  E  RL+ KC 
Subjt:  LAMTAMLTVIILYFIG-FSFYYRTRNNESESTSAVAGPM-------PALQEPEIVQIEAM-AFSYKEAKGSE--NDDYECVICLNQFKGGEKCRLMKKCG

Query:  HIFHRSCIDRWLMAERQCPLCRS
        H+FH  CID WL A   CP+CR+
Subjt:  HIFHRSCIDRWLMAERQCPLCRS

AT4G09100.1 RING/U-box superfamily protein2.6e-1335.34Show/hide
Query:  AMLTVIILYFIGFSFYYRTRNNESESTSAVAGPMPALQEPEIVQIEAM----AFSYKEAKGSEN--DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCID
        A +  I  Y I + +  R RN  + +       M   + P  +  EA+    +F Y EA+G E    + ECV+CLN+FK  E  RL+  C H+FH  C+D
Subjt:  AMLTVIILYFIGFSFYYRTRNNESESTSAVAGPMPALQEPEIVQIEAM----AFSYKEAKGSEN--DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCID

Query:  RWLMAERQCPLCRSCV
         WL     CP+CR+ V
Subjt:  RWLMAERQCPLCRSCV

AT4G30400.1 RING/U-box superfamily protein9.8e-1330.97Show/hide
Query:  SSLPFVATPP---ATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYY----------RTRNNESESTSAVAGPMPA---LQEPEIVQ--IEAM-AFSYK
        SSLP    PP    +  NF+L S      +  ++ + I++FI    +           R R +  ++ +A+ G +     L +  + Q  I+ +  F YK
Subjt:  SSLPFVATPP---ATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYY----------RTRNNESESTSAVAGPMPA---LQEPEIVQ--IEAM-AFSYK

Query:  EAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRS
           G +N  ++C +CL +F+  +K RL+ KC H FH  CID WL++   CPLCRS
Subjt:  EAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRS

AT5G10380.1 RING/U-box superfamily protein4.4e-1327.95Show/hide
Query:  PPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAG-------------------------PMPALQEPEIVQIEAMAFSYKEA
        PP  PP  EL+             ++ L+ + F + + T+     + S   G                         P   L    I  I  + F  K+ 
Subjt:  PPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAG-------------------------PMPALQEPEIVQIEAMAFSYKEA

Query:  KGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP
        +G   D  EC +CLN+F+  E  RL+ KC H FH +CID WL++ + CPLCR+ V ++ +P
Subjt:  KGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCGCTGCCGTTTGTTGCCACTCCACCGGCGACACCGCCCAATTTTGAACTGACTTCGACGGATAAGTATTTGGCTATGACTGCCATGCTTACCGTTATTATACT
ATACTTCATCGGCTTCAGTTTCTACTACAGAACAAGAAATAATGAATCGGAATCCACCAGTGCGGTGGCCGGACCAATGCCGGCGTTGCAAGAGCCGGAGATTGTGCAGA
TTGAGGCCATGGCTTTTAGTTACAAGGAAGCTAAGGGAAGTGAGAATGATGATTATGAATGTGTGATTTGCTTGAACCAATTTAAAGGAGGAGAAAAGTGTCGATTGATG
AAAAAATGTGGCCATATATTTCACCGGAGCTGCATCGACCGGTGGCTCATGGCGGAGCGACAATGCCCACTTTGCCGGAGCTGTGTTTGCATCGTCGTGAAACCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCATCGCTGCCGTTTGTTGCCACTCCACCGGCGACACCGCCCAATTTTGAACTGACTTCGACGGATAAGTATTTGGCTATGACTGCCATGCTTACCGTTATTATACT
ATACTTCATCGGCTTCAGTTTCTACTACAGAACAAGAAATAATGAATCGGAATCCACCAGTGCGGTGGCCGGACCAATGCCGGCGTTGCAAGAGCCGGAGATTGTGCAGA
TTGAGGCCATGGCTTTTAGTTACAAGGAAGCTAAGGGAAGTGAGAATGATGATTATGAATGTGTGATTTGCTTGAACCAATTTAAAGGAGGAGAAAAGTGTCGATTGATG
AAAAAATGTGGCCATATATTTCACCGGAGCTGCATCGACCGGTGGCTCATGGCGGAGCGACAATGCCCACTTTGCCGGAGCTGTGTTTGCATCGTCGTGAAACCATAA
Protein sequenceShow/hide protein sequence
MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAGPMPALQEPEIVQIEAMAFSYKEAKGSENDDYECVICLNQFKGGEKCRLM
KKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP