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Lsi02G013790 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G013790
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionFlagellar hook-associated protein like
Genome locationchr02:18792579..18793407
RNA-Seq ExpressionLsi02G013790
SyntenyLsi02G013790
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653233.1 hypothetical protein Csa_019953 [Cucumis sativus]3.0e-4985.04Show/hide
Query:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRRR-PAQIRGGRRRSRC
        MASVCISECV+NACIV AARPTYVNLQRWSEEEK STERRRPRPRAADGI RRQMYLRSYTFSRED VVPE+TTQNC GKIRRRRR PA IRGGRRRSRC
Subjt:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRRR-PAQIRGGRRRSRC

Query:  FAIVKAAATKASSGALLSMIRRFLCRV
         A+VKAAA++ SSGALL + RR LC V
Subjt:  FAIVKAAATKASSGALLSMIRRFLCRV

XP_008457578.1 PREDICTED: uncharacterized protein LOC103497245 [Cucumis melo]3.5e-5085.83Show/hide
Query:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRR-RPAQIRGGRRRSRC
        MASVCISECV+NACIV AA+PTYVNLQRWSEEEK STERRRPRPRAA+GI RRQMYLRSYTFSREDTVVPE+TTQNC GKIRRRR RPA+IRG RRRSRC
Subjt:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRR-RPAQIRGGRRRSRC

Query:  FAIVKAAATKASSGALLSMIRRFLCRV
        FA+VKAAAT+ASSGAL+ M RR LC V
Subjt:  FAIVKAAATKASSGALLSMIRRFLCRV

XP_011648508.1 uncharacterized protein LOC105434501 [Cucumis sativus]3.0e-4985.04Show/hide
Query:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRRR-PAQIRGGRRRSRC
        MASVCISECV+NACIV AARPTYVNLQRWSEEEK STERRRPRPRAADGI RRQMYLRSYTFSRED VVPE+TTQNC GKIRRRRR PA IRGGRRRSRC
Subjt:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRRR-PAQIRGGRRRSRC

Query:  FAIVKAAATKASSGALLSMIRRFLCRV
         A+VKAAA++ SSGALL + RR LC V
Subjt:  FAIVKAAATKASSGALLSMIRRFLCRV

XP_022970388.1 uncharacterized protein LOC111469389 [Cucurbita maxima]1.2e-4579.37Show/hide
Query:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRRRPAQIRGGRRRSRCF
        MASVCISEC+N+ACI+PA RPTY +LQRW EEE  S E RRPR RAADGI RRQMYLRSYTFSREDT V EST Q CLGK++RRRRPA+IRGG RRSRCF
Subjt:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRRRPAQIRGGRRRSRCF

Query:  AIVKAAATKASSGALLSMIRRFLCRV
        AIV+AAA KASSGALLSM RR LC V
Subjt:  AIVKAAATKASSGALLSMIRRFLCRV

XP_023519361.1 uncharacterized protein LOC111782795 [Cucurbita pepo subsp. pepo]4.9e-4478.86Show/hide
Query:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRRRPAQIRGGRRRSRCF
        MASVCISEC+N+ CI+PA RPTY +LQRW EEE  S E RRPR RAADGI RRQMYLRSYTFSREDT V EST Q CLGK++RRRRPA+IRGG RRSRCF
Subjt:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRRRPAQIRGGRRRSRCF

Query:  AIVKAAATKASSGALLSMIRRFL
        AIV+AAA KASSGALLSM RR L
Subjt:  AIVKAAATKASSGALLSMIRRFL

TrEMBL top hitse value%identityAlignment
A0A0A0LXY3 Uncharacterized protein1.4e-4985.04Show/hide
Query:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRRR-PAQIRGGRRRSRC
        MASVCISECV+NACIV AARPTYVNLQRWSEEEK STERRRPRPRAADGI RRQMYLRSYTFSRED VVPE+TTQNC GKIRRRRR PA IRGGRRRSRC
Subjt:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRRR-PAQIRGGRRRSRC

Query:  FAIVKAAATKASSGALLSMIRRFLCRV
         A+VKAAA++ SSGALL + RR LC V
Subjt:  FAIVKAAATKASSGALLSMIRRFLCRV

A0A1S3C748 uncharacterized protein LOC1034972451.7e-5085.83Show/hide
Query:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRR-RPAQIRGGRRRSRC
        MASVCISECV+NACIV AA+PTYVNLQRWSEEEK STERRRPRPRAA+GI RRQMYLRSYTFSREDTVVPE+TTQNC GKIRRRR RPA+IRG RRRSRC
Subjt:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRR-RPAQIRGGRRRSRC

Query:  FAIVKAAATKASSGALLSMIRRFLCRV
        FA+VKAAAT+ASSGAL+ M RR LC V
Subjt:  FAIVKAAATKASSGALLSMIRRFLCRV

A0A5A7SXG3 Uncharacterized protein1.7e-5085.83Show/hide
Query:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRR-RPAQIRGGRRRSRC
        MASVCISECV+NACIV AA+PTYVNLQRWSEEEK STERRRPRPRAA+GI RRQMYLRSYTFSREDTVVPE+TTQNC GKIRRRR RPA+IRG RRRSRC
Subjt:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRR-RPAQIRGGRRRSRC

Query:  FAIVKAAATKASSGALLSMIRRFLCRV
        FA+VKAAAT+ASSGAL+ M RR LC V
Subjt:  FAIVKAAATKASSGALLSMIRRFLCRV

A0A6J1HP59 uncharacterized protein LOC1114647454.1e-4478.86Show/hide
Query:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRRRPAQIRGGRRRSRCF
        MASVCISEC+N+ACI+PA RPTY +LQRW EEE  S E RRPR RAADGI RRQMYLRSYTF REDTVV EST Q CLGK++ RRRPA+IRGG RRSRCF
Subjt:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRRRPAQIRGGRRRSRCF

Query:  AIVKAAATKASSGALLSMIRRFL
        AIV+AAA KASSGALLSM RR L
Subjt:  AIVKAAATKASSGALLSMIRRFL

A0A6J1I3Q2 uncharacterized protein LOC1114693895.7e-4679.37Show/hide
Query:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRRRPAQIRGGRRRSRCF
        MASVCISEC+N+ACI+PA RPTY +LQRW EEE  S E RRPR RAADGI RRQMYLRSYTFSREDT V EST Q CLGK++RRRRPA+IRGG RRSRCF
Subjt:  MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRRRPAQIRGGRRRSRCF

Query:  AIVKAAATKASSGALLSMIRRFLCRV
        AIV+AAA KASSGALLSM RR LC V
Subjt:  AIVKAAATKASSGALLSMIRRFLCRV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G46300.1 unknown protein6.3e-0532.86Show/hide
Query:  MASVCISECVN----NACIVPAARPTYVNLQRWSEEE-----KMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRRRPAQIR
        MAS CI +CVN    + C+ P    TY NL +W   E      ++ +  + R    D I  RQMYLRSYTFS E+    E         + RR   +  R
Subjt:  MASVCISECVN----NACIVPAARPTYVNLQRWSEEE-----KMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRRRPAQIR

Query:  GGRRRSRCFAIVKAAATKASSGALLSMIRRFLCRVLLEAL
        GG  R       K AA  A         R F+ R++ + L
Subjt:  GGRRRSRCFAIVKAAATKASSGALLSMIRRFLCRVLLEAL

AT3G46310.1 unknown protein1.4e-0440.54Show/hide
Query:  MASVCISECV---NNACIVPAARPTYVNLQRWSEEE-----KMSTERRRPRPRAADGIYRRQMYLRSYTFSRED
        MAS CI +CV   NNA  V   R T+  + +W   E      +S +    R  A + +  RQMYLRSYTFSR++
Subjt:  MASVCISECV---NNACIVPAARPTYVNLQRWSEEE-----KMSTERRRPRPRAADGIYRRQMYLRSYTFSRED

AT5G02640.1 unknown protein6.5e-1034.59Show/hide
Query:  MASVCISECVNNA----CIVPAARPTYVNLQRW--SEEEKMSTERR---RPRPRAADGIYRRQMYLRSYTFSRED-----TVVPESTTQNCLGKIR----
        M SVCIS C+N+A      V   R +YVNL +W  S+ E + + RR    P  R  D I  RQMYLRSYTFSRED       V   T  +CLG+++    
Subjt:  MASVCISECVNNA----CIVPAARPTYVNLQRW--SEEEKMSTERR---RPRPRAADGIYRRQMYLRSYTFSRED-----TVVPESTTQNCLGKIR----

Query:  RRRRPAQIRG--------GRRRSRCFAIVKAAATKASSGALLSMIRRFL-CRVLLEALD
         RR+  +  G         RRR     + +    + +   +L + RR L C   ++ +D
Subjt:  RRRRPAQIRG--------GRRRSRCFAIVKAAATKASSGALLSMIRRFL-CRVLLEALD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGTCTGCATATCCGAATGCGTCAACAACGCCTGCATCGTCCCCGCCGCTCGACCGACGTACGTCAACCTGCAGCGATGGTCGGAGGAAGAGAAGATGTCTAC
AGAGCGCCGCCGCCCAAGGCCGAGAGCGGCGGACGGAATTTATCGCCGGCAAATGTACCTGCGGAGCTACACCTTCTCCAGAGAGGACACCGTTGTCCCTGAGAGTACAA
CTCAGAATTGCCTTGGGAAGATCAGGCGCCGGCGGAGGCCGGCACAGATTCGCGGCGGCCGGAGGAGGAGCCGATGTTTCGCCATCGTGAAGGCCGCCGCCACAAAGGCT
TCTTCCGGCGCCTTGCTCTCCATGATCCGTCGGTTTCTTTGTCGCGTGTTACTTGAAGCACTTGATGAGCCAATTGCTTCGCTTGACGCCACTAAAGATCATCTCTATCT
TGATCTCCGACATTTCACCGATGTCCTTGTTCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCGTCTGCATATCCGAATGCGTCAACAACGCCTGCATCGTCCCCGCCGCTCGACCGACGTACGTCAACCTGCAGCGATGGTCGGAGGAAGAGAAGATGTCTAC
AGAGCGCCGCCGCCCAAGGCCGAGAGCGGCGGACGGAATTTATCGCCGGCAAATGTACCTGCGGAGCTACACCTTCTCCAGAGAGGACACCGTTGTCCCTGAGAGTACAA
CTCAGAATTGCCTTGGGAAGATCAGGCGCCGGCGGAGGCCGGCACAGATTCGCGGCGGCCGGAGGAGGAGCCGATGTTTCGCCATCGTGAAGGCCGCCGCCACAAAGGCT
TCTTCCGGCGCCTTGCTCTCCATGATCCGTCGGTTTCTTTGTCGCGTGTTACTTGAAGCACTTGATGAGCCAATTGCTTCGCTTGACGCCACTAAAGATCATCTCTATCT
TGATCTCCGACATTTCACCGATGTCCTTGTTCTGTAAAGTCAATTTCCTTCTTCTTTGATTTTTCTTTTAGTTGTATGAATTAACTTTGCTAATGAATAAAATTGTTACA
ATAATTATCTATCTTGT
Protein sequenceShow/hide protein sequence
MASVCISECVNNACIVPAARPTYVNLQRWSEEEKMSTERRRPRPRAADGIYRRQMYLRSYTFSREDTVVPESTTQNCLGKIRRRRRPAQIRGGRRRSRCFAIVKAAATKA
SSGALLSMIRRFLCRVLLEALDEPIASLDATKDHLYLDLRHFTDVLVL