; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G013810 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G013810
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionzinc finger protein CONSTANS-LIKE 3-like
Genome locationchr02:18851696..18854767
RNA-Seq ExpressionLsi02G013810
SyntenyLsi02G013810
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR010402 - CCT domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008457517.1 PREDICTED: zinc finger protein CONSTANS-LIKE 3-like [Cucumis melo]3.0e-6260.08Show/hide
Query:  MHSFSPATATITTDASLGHLHSPDLTV--SPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEV-SYSGSSGPCSSYGSPT-LQPAL
        MHSFSPA      D S+ HLHSPDL V  SPPLFPSFPNF  S S SSSFLL Y+QL+    LD VLESP  LP EV SYSGSSGPCSSYGSPT  QPAL
Subjt:  MHSFSPATATITTDASLGHLHSPDLTV--SPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEV-SYSGSSGPCSSYGSPT-LQPAL

Query:  IQRSASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQ--------------------------------------------------YECRKT
        IQRS SS SLQK+R  +GPG  ISSL DT++PAVRRVYSSGDLQ                                                  YECRKT
Subjt:  IQRSASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQ--------------------------------------------------YECRKT

Query:  LADSRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEE--DTQDDGSWITFFDSY
        LADSR+RIRGRFARNEEIENSNST SP++ W+CYDN MV+E   TQDDGSWITF DSY
Subjt:  LADSRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEE--DTQDDGSWITFFDSY

XP_011657991.1 two-component response regulator-like APRR9 isoform X1 [Cucumis sativus]7.2e-6460.39Show/hide
Query:  MHSFSPATATITTDASLGHLHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEV-SYSGSSGPCSSYGSPT-LQPALIQ
        MHSFSPA      D S+ HLHSPDL VSPPLFPSFPNF  S S SSSFLL Y+QL+    L+ VLESP  LPSEV SYSGSSGPCSSYGSPT  QP+LIQ
Subjt:  MHSFSPATATITTDASLGHLHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEV-SYSGSSGPCSSYGSPT-LQPALIQ

Query:  RSASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQ--------------------------------------------------YECRKTLA
        RS SS SLQK+R  +GPG  ISSL DT++PAVRRVYSSGDLQ                                                  YECRKTLA
Subjt:  RSASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQ--------------------------------------------------YECRKTLA

Query:  DSRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEEDT-QDDGSWITFFDSY
        DSR+RIRGRFARNEEIEN NST SP++ W+CY+N MVEEDT QDDGSWITF DSY
Subjt:  DSRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEEDT-QDDGSWITFFDSY

XP_022970464.1 uncharacterized protein LOC111469436 isoform X2 [Cucurbita maxima]5.2e-5463.41Show/hide
Query:  MHSFSPATATITTDASLGHLHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEVSYSGSSGPCSSYGSPTLQPALIQRS
        MH+FS A    T +ASL HL +PDL VSPPL  SFP+F SS SS            L SEL  +LE  G LPSE+SYS SSGPCSSY SPT +P   QRS
Subjt:  MHSFSPATATITTDASLGHLHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEVSYSGSSGPCSSYGSPTLQPALIQRS

Query:  ASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQYECRKTLADSRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEEDTQDDGSWITFFD
                   S+GPGV IS LFD E  +VRR Y S DLQYECRKTLADSR+RIRGRFARNEE+ENSNST SP +TW+CYDNA  EED QDDGSWITF D
Subjt:  ASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQYECRKTLADSRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEEDTQDDGSWITFFD

Query:  SYSVN
        SYSVN
Subjt:  SYSVN

XP_031738516.1 uncharacterized protein LOC105435928 isoform X2 [Cucumis sativus]6.1e-7175.12Show/hide
Query:  MHSFSPATATITTDASLGHLHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEV-SYSGSSGPCSSYGSPT-LQPALIQ
        MHSFSPA      D S+ HLHSPDL VSPPLFPSFPNF  S S SSSFLL Y+QL+    L+ VLESP  LPSEV SYSGSSGPCSSYGSPT  QP+LIQ
Subjt:  MHSFSPATATITTDASLGHLHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEV-SYSGSSGPCSSYGSPT-LQPALIQ

Query:  RSASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQYECRKTLADSRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEEDT-QDDGSWIT
        RS SS SLQK+R  +GPG  ISSL DT++PAVRRVYSSGDLQYECRKTLADSR+RIRGRFARNEEIEN NST SP++ W+CY+N MVEEDT QDDGSWIT
Subjt:  RSASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQYECRKTLADSRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEEDT-QDDGSWIT

Query:  FFDSY
        F DSY
Subjt:  FFDSY

XP_038895146.1 zinc finger protein CONSTANS-LIKE 5-like [Benincasa hispida]1.4e-7565.1Show/hide
Query:  MHSFSPATATITTDASLGHLHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEVSYSGSSGPCSSYGSPTLQPALIQRS
        MH+FS  T TIT DASL HLHSPD  VSPPLFPSFPNFFSS +SSSS L TY+QL   SELD VLES GFLPSEVSYSGSSGPCSSYGSPT QPALI RS
Subjt:  MHSFSPATATITTDASLGHLHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEVSYSGSSGPCSSYGSPTLQPALIQRS

Query:  ASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQ--------------------------------------------------YECRKTLADS
         SS+SLQKNR S+GPG   SSLFD + PAVRRVYSSGDLQ                                                  YECRKTLADS
Subjt:  ASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQ--------------------------------------------------YECRKTLADS

Query:  RKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEEDTQDDGSWITFFDSYSVN
        R+RIRGRFARNEE ENSNST SP++TW+ YDNAMVEEDTQDDGSWITF  SYSVN
Subjt:  RKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEEDTQDDGSWITFFDSYSVN

TrEMBL top hitse value%identityAlignment
A0A0A0LUR6 CCT domain-containing protein3.5e-6460.39Show/hide
Query:  MHSFSPATATITTDASLGHLHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEV-SYSGSSGPCSSYGSPT-LQPALIQ
        MHSFSPA      D S+ HLHSPDL VSPPLFPSFPNF  S S SSSFLL Y+QL+    L+ VLESP  LPSEV SYSGSSGPCSSYGSPT  QP+LIQ
Subjt:  MHSFSPATATITTDASLGHLHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEV-SYSGSSGPCSSYGSPT-LQPALIQ

Query:  RSASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQ--------------------------------------------------YECRKTLA
        RS SS SLQK+R  +GPG  ISSL DT++PAVRRVYSSGDLQ                                                  YECRKTLA
Subjt:  RSASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQ--------------------------------------------------YECRKTLA

Query:  DSRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEEDT-QDDGSWITFFDSY
        DSR+RIRGRFARNEEIEN NST SP++ W+CY+N MVEEDT QDDGSWITF DSY
Subjt:  DSRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEEDT-QDDGSWITFFDSY

A0A1S3C703 zinc finger protein CONSTANS-LIKE 3-like1.5e-6260.08Show/hide
Query:  MHSFSPATATITTDASLGHLHSPDLTV--SPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEV-SYSGSSGPCSSYGSPT-LQPAL
        MHSFSPA      D S+ HLHSPDL V  SPPLFPSFPNF  S S SSSFLL Y+QL+    LD VLESP  LP EV SYSGSSGPCSSYGSPT  QPAL
Subjt:  MHSFSPATATITTDASLGHLHSPDLTV--SPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEV-SYSGSSGPCSSYGSPT-LQPAL

Query:  IQRSASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQ--------------------------------------------------YECRKT
        IQRS SS SLQK+R  +GPG  ISSL DT++PAVRRVYSSGDLQ                                                  YECRKT
Subjt:  IQRSASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQ--------------------------------------------------YECRKT

Query:  LADSRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEE--DTQDDGSWITFFDSY
        LADSR+RIRGRFARNEEIENSNST SP++ W+CYDN MV+E   TQDDGSWITF DSY
Subjt:  LADSRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEE--DTQDDGSWITFFDSY

A0A6J1HLZ0 zinc finger protein CONSTANS-LIKE 5-like2.5e-4650.59Show/hide
Query:  MHSFSPATATITTDASLGHLHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEVSYSGSSGPCSSYGSPTLQPALIQRS
        MH+FS A    T +ASL HL +PDL +SPPL  SFP+F SS SSS S L       L S+L  +LESPG LPSE+SYS SSGPCSSYGSPT +P   QRS
Subjt:  MHSFSPATATITTDASLGHLHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEVSYSGSSGPCSSYGSPTLQPALIQRS

Query:  ASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQ---------------------------------------------------YECRKTLAD
                    + P V IS+LFD E  +VRR YS  DLQ                                                   YECRKTLAD
Subjt:  ASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQ---------------------------------------------------YECRKTLAD

Query:  SRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEEDTQDDGSWITFFDSYSV
        SR+RIRGRFARNEE+ENSNST SP +TW+CYDNA  EE  QDDGSWITF DSYSV
Subjt:  SRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEEDTQDDGSWITFFDSYSV

A0A6J1I3X3 zinc finger protein CONSTANS-LIKE 5-like isoform X13.9e-4750.78Show/hide
Query:  MHSFSPATATITTDASLGHLHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEVSYSGSSGPCSSYGSPTLQPALIQRS
        MH+FS A    T +ASL HL +PDL VSPPL  SFP+F SS SS            L SEL  +LE  G LPSE+SYS SSGPCSSY SPT +P   QRS
Subjt:  MHSFSPATATITTDASLGHLHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEVSYSGSSGPCSSYGSPTLQPALIQRS

Query:  ASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQ---------------------------------------------------YECRKTLAD
                   S+GPGV IS LFD E  +VRR Y S DLQ                                                   YECRKTLAD
Subjt:  ASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQ---------------------------------------------------YECRKTLAD

Query:  SRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEEDTQDDGSWITFFDSYSVN
        SR+RIRGRFARNEE+ENSNST SP +TW+CYDNA  EED QDDGSWITF DSYSVN
Subjt:  SRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEEDTQDDGSWITFFDSYSVN

A0A6J1I5K4 uncharacterized protein LOC111469436 isoform X22.5e-5463.41Show/hide
Query:  MHSFSPATATITTDASLGHLHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEVSYSGSSGPCSSYGSPTLQPALIQRS
        MH+FS A    T +ASL HL +PDL VSPPL  SFP+F SS SS            L SEL  +LE  G LPSE+SYS SSGPCSSY SPT +P   QRS
Subjt:  MHSFSPATATITTDASLGHLHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEVSYSGSSGPCSSYGSPTLQPALIQRS

Query:  ASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQYECRKTLADSRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEEDTQDDGSWITFFD
                   S+GPGV IS LFD E  +VRR Y S DLQYECRKTLADSR+RIRGRFARNEE+ENSNST SP +TW+CYDNA  EED QDDGSWITF D
Subjt:  ASSYSLQKNRGSYGPGVAISSLFDTEVPAVRRVYSSGDLQYECRKTLADSRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEEDTQDDGSWITFFD

Query:  SYSVN
        SYSVN
Subjt:  SYSVN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G04500.1 CCT motif family protein4.8e-0538.67Show/hide
Query:  SGDLQYECRKTLADSRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEE-----DTQDDGSWITFFDSYSVN
        S  ++Y CRKTLADSR R+RGRFA+N+E    N         +  D+  V+E     D+ D  S I+  +S+  N
Subjt:  SGDLQYECRKTLADSRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEE-----DTQDDGSWITFFDSYSVN

AT1G63820.1 CCT motif family protein8.1e-0569.23Show/hide
Query:  LQYECRKTLADSRKRIRGRFARNEEI
        ++Y CRKTLAD+R R+RGRFARN+E+
Subjt:  LQYECRKTLADSRKRIRGRFARNEEI

AT2G33350.1 CCT motif family protein1.4e-0463.33Show/hide
Query:  LQYECRKTLADSRKRIRGRFARNEEIENSN
        ++Y CRKTLADSR R+RGRFA+N+E    N
Subjt:  LQYECRKTLADSRKRIRGRFARNEEIENSN

AT5G41380.1 CCT motif family protein2.8e-0576.92Show/hide
Query:  LQYECRKTLADSRKRIRGRFARNEEI
        ++Y CRKTLADSR RIRGRFARN+E+
Subjt:  LQYECRKTLADSRKRIRGRFARNEEI

AT5G59990.1 CCT motif family protein1.5e-0627.27Show/hide
Query:  LHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEVSYSGSSGPC---SSYGSPTLQPALIQRSASSYSLQKNRGSYGPG
        L+S D+   P L     + F  P  +   LL  +Q SL +     +   G+  S ++  G S  C   SS GS   +  ++QRS SS++     G  G  
Subjt:  LHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEVSYSGSSGPC---SSYGSPTLQPALIQRSASSYSLQKNRGSYGPG

Query:  VAISSLFDTEVPAVRRVYSSGDL-----------------------------------------------------QYECRKTLADSRKRIRGRFARNEE
         A     + +   VRR  S+GDL                                                     +YECRKTLADSR RIRGRFARN+E
Subjt:  VAISSLFDTEVPAVRRVYSSGDL-----------------------------------------------------QYECRKTLADSRKRIRGRFARNEE

Query:  IENSNSTGSPIKTWNCYDNAMVEEDTQDDGSWITFFDSYSVN
        I                   ++E    D  +W +F DS+S N
Subjt:  IENSNSTGSPIKTWNCYDNAMVEEDTQDDGSWITFFDSYSVN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAGCTTCTCCCCGGCCACCGCCACCATCACCACCGACGCCTCTCTCGGCCACCTCCACTCCCCCGACCTCACCGTGTCACCGCCACTTTTTCCATCGTTCCCTAA
TTTCTTTTCTTCTCCTTCCTCTTCCTCCTCCTTCCTCCTGACGTATAATCAGCTCTCTCTCGGGAGCGAGCTGGACTCAGTGCTCGAGTCACCGGGGTTTTTACCCTCGG
AGGTCAGTTATAGCGGTAGTAGTGGACCTTGTAGTAGCTACGGGTCTCCGACTTTGCAGCCTGCCCTAATACAACGGAGCGCGAGTAGCTACTCGCTCCAAAAGAATAGG
GGAAGCTACGGACCGGGCGTTGCAATTTCCTCGTTGTTCGACACGGAGGTGCCGGCCGTGAGAAGGGTTTACAGCTCCGGTGATTTGCAGTATGAGTGCAGGAAAACATT
GGCAGACAGTAGAAAGCGAATAAGAGGAAGATTTGCAAGAAATGAAGAAATTGAAAATAGTAACTCCACAGGCTCGCCGATAAAGACATGGAACTGCTATGACAATGCCA
TGGTGGAAGAAGACACCCAAGACGATGGCTCATGGATCACTTTCTTTGACTCTTATTCTGTTAATTAG
mRNA sequenceShow/hide mRNA sequence
TTATTATTGGATTCTCAAAGAAATGGTCAACGCTCTCTCCATCCTACTTAACCCCCTCTATCTCCCATCCCTTCCTTTCATTCCCACAAACCAAAAATAACTACAAAATA
TTCAAACTCTTCTCCCTCCTCTTTCCTCCGCCACCTCATCATGCACAGCTTCTCCCCGGCCACCGCCACCATCACCACCGACGCCTCTCTCGGCCACCTCCACTCCCCCG
ACCTCACCGTGTCACCGCCACTTTTTCCATCGTTCCCTAATTTCTTTTCTTCTCCTTCCTCTTCCTCCTCCTTCCTCCTGACGTATAATCAGCTCTCTCTCGGGAGCGAG
CTGGACTCAGTGCTCGAGTCACCGGGGTTTTTACCCTCGGAGGTCAGTTATAGCGGTAGTAGTGGACCTTGTAGTAGCTACGGGTCTCCGACTTTGCAGCCTGCCCTAAT
ACAACGGAGCGCGAGTAGCTACTCGCTCCAAAAGAATAGGGGAAGCTACGGACCGGGCGTTGCAATTTCCTCGTTGTTCGACACGGAGGTGCCGGCCGTGAGAAGGGTTT
ACAGCTCCGGTGATTTGCAGTATGAGTGCAGGAAAACATTGGCAGACAGTAGAAAGCGAATAAGAGGAAGATTTGCAAGAAATGAAGAAATTGAAAATAGTAACTCCACA
GGCTCGCCGATAAAGACATGGAACTGCTATGACAATGCCATGGTGGAAGAAGACACCCAAGACGATGGCTCATGGATCACTTTCTTTGACTCTTATTCTGTTAATTAGAT
CGACGTTTGTACTTCCATCTTACAATTGCTAAATTAAAAAAAAAAAAAAAATTGATCAATCGACTTTTAGAATGGTAAAAGCATTTGTCTTCTTCTTTTAAGTCATTGAA
CTTTGTAAATTGAAGTCCACTGT
Protein sequenceShow/hide protein sequence
MHSFSPATATITTDASLGHLHSPDLTVSPPLFPSFPNFFSSPSSSSSFLLTYNQLSLGSELDSVLESPGFLPSEVSYSGSSGPCSSYGSPTLQPALIQRSASSYSLQKNR
GSYGPGVAISSLFDTEVPAVRRVYSSGDLQYECRKTLADSRKRIRGRFARNEEIENSNSTGSPIKTWNCYDNAMVEEDTQDDGSWITFFDSYSVN