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Lsi02G013880 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G013880
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr02:18983447..18985859
RNA-Seq ExpressionLsi02G013880
SyntenyLsi02G013880
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033894.1 uncharacterized protein E6C27_scaffold43059G00810 [Cucumis melo var. makuwa]6.3e-0462.96Show/hide
Query:  SLTFARSV--------------DMGGRRLSVYERLTLKKKAPRNAVETSKGPLT
        SLTFARSV              DMGG RLS+YERL L KKAPRNAVETS+GP T
Subjt:  SLTFARSV--------------DMGGRRLSVYERLTLKKKAPRNAVETSKGPLT
TYK01278.1 uncharacterized protein E5676_scaffold49G00660 [Cucumis melo var. makuwa]3.0e-0682.5Show/hide
Query:  SLTFARSVDMGGRRLSVYERLTLKKKAPRNAVETSKGPLT
        SLTFARSV+MGG RLS+YERL L KKAPRNAVETS+GP T
Subjt:  SLTFARSVDMGGRRLSVYERLTLKKKAPRNAVETSKGPLT
XP_008457535.1 PREDICTED: uncharacterized protein LOC103497201 isoform X1 [Cucumis melo]1.0e-0958.54Show/hide
Query:  GYLSPDSVPQKIKHFHTSLTFARSV--------------DMGGRRLSVYERLTLKKKAPRNAVETSKGPLTVNVPDLTEDDN
        GY    S   +I  F+ SLTFARSV              DMGG RLS+YERL L KKAPRNAVETS+GP TVNV DLTED N
Subjt:  GYLSPDSVPQKIKHFHTSLTFARSV--------------DMGGRRLSVYERLTLKKKAPRNAVETSKGPLTVNVPDLTEDDN
XP_016902097.1 PREDICTED: uncharacterized protein LOC103497201 isoform X2 [Cucumis melo]6.5e-0966.15Show/hide
Query:  SLTFARSV--------------DMGGRRLSVYERLTLKKKAPRNAVETSKGPLTVNVPDLTEDDN
        SLTFARSV              DMGG RLS+YERL L KKAPRNAVETS+GP TVNV DLTED N
Subjt:  SLTFARSV--------------DMGGRRLSVYERLTLKKKAPRNAVETSKGPLTVNVPDLTEDDN
TrEMBL top hitse value%identityAlignment
A0A1S3C6E7 uncharacterized protein LOC103497201 isoform X14.9e-1058.54Show/hide
Query:  GYLSPDSVPQKIKHFHTSLTFARSV--------------DMGGRRLSVYERLTLKKKAPRNAVETSKGPLTVNVPDLTEDDN
        GY    S   +I  F+ SLTFARSV              DMGG RLS+YERL L KKAPRNAVETS+GP TVNV DLTED N
Subjt:  GYLSPDSVPQKIKHFHTSLTFARSV--------------DMGGRRLSVYERLTLKKKAPRNAVETSKGPLTVNVPDLTEDDN
A0A1S4E1J5 uncharacterized protein LOC103497201 isoform X23.2e-0966.15Show/hide
Query:  SLTFARSV--------------DMGGRRLSVYERLTLKKKAPRNAVETSKGPLTVNVPDLTEDDN
        SLTFARSV              DMGG RLS+YERL L KKAPRNAVETS+GP TVNV DLTED N
Subjt:  SLTFARSV--------------DMGGRRLSVYERLTLKKKAPRNAVETSKGPLTVNVPDLTEDDN
A0A5A7SRR9 Uncharacterized protein3.1e-0462.96Show/hide
Query:  SLTFARSV--------------DMGGRRLSVYERLTLKKKAPRNAVETSKGPLT
        SLTFARSV              DMGG RLS+YERL L KKAPRNAVETS+GP T
Subjt:  SLTFARSV--------------DMGGRRLSVYERLTLKKKAPRNAVETSKGPLT
A0A5D3BQJ2 Uncharacterized protein1.5e-0682.5Show/hide
Query:  SLTFARSVDMGGRRLSVYERLTLKKKAPRNAVETSKGPLT
        SLTFARSV+MGG RLS+YERL L KKAPRNAVETS+GP T
Subjt:  SLTFARSVDMGGRRLSVYERLTLKKKAPRNAVETSKGPLT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGAGTTAGAGTTGTGAAGCTTTCCTTTCTATTTATACGAGGTTGGCTTAGGGTATTTGAGTCGATCCTTGTTGAGTCAAACCAGACCGGTTTGGGGTACTTGTC
ACCTGATTCGGTTCCTCAAAAGATCAAACATTTCCATACTAGCTTGACATTTGCAAGATCCGTAGATATGGGAGGTCGCCGACTATCTGTATATGAACGCCTCACTCTAA
AGAAGAAGGCCCCAAGAAATGCTGTTGAGACATCCAAGGGACCATTGACGGTTAACGTCCCTGACCTAACAGAGGACGATAATCTTCGTATTCGACCTTCGATTCCACAT
CACACATCCCCTGCAAACTGTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGAGTTAGAGTTGTGAAGCTTTCCTTTCTATTTATACGAGGTTGGCTTAGGGTATTTGAGTCGATCCTTGTTGAGTCAAACCAGACCGGTTTGGGGTACTTGTC
ACCTGATTCGGTTCCTCAAAAGATCAAACATTTCCATACTAGCTTGACATTTGCAAGATCCGTAGATATGGGAGGTCGCCGACTATCTGTATATGAACGCCTCACTCTAA
AGAAGAAGGCCCCAAGAAATGCTGTTGAGACATCCAAGGGACCATTGACGGTTAACGTCCCTGACCTAACAGAGGACGATAATCTTCGTATTCGACCTTCGATTCCACAT
CACACATCCCCTGCAAACTGTTGTTGATCCGCCCAGCTACATAGTGGTTCATCCTCGCAAGGAGTTGAACAATCAACTAGGATTCCTGCTTTTGTTCTCCCAAAGAACTA
CTCTGGAGTTGTAGACGAGGTCGAGCTACTTAGCAAAAGCTTTGCACTATGGCAAGAACTCGGCCAATGCCGTCCGGAGGGGGAACTTGGGTTCAATGACCCTTCAGAAG
CTATCACTCAAGCCCTCTCCGAGTTGCATAATATCTTCATTCGAGTTTCTGTGTCAACTATGAGTATGGCCAACCACATCAACTTTCTTGAGCAAAACTATGTTCCCAAG
GCCGAGCTAGCTCAGGCTCAAGCTATTTTAGCTCGTGCCAATCAACAATTAGCTGAGGTTAGACGCGAGCTGGAATCTTGTCAAGCTAATATTACCACACTCAAGGCTCA
ATTGGACGAGGCCGAATCTTGCCTCGCTAATCCTGAATATCTAGCTGAGGAGTTCAAGAAGACAGATGCATATACTAAAATGCAACATGATATAATGGAACGTGCGGTTA
TTTGGTCGATTCAACGATTATCTCGATGCCATCCTGAGATAGATTTTGGATTCTTGTATGATGAATTCATCGCAATGCGCAATGACCCTAACATGTTCGGTTATGATTCC
AACTGCAGGACCTTTTAGTGTTGACAGTAATGACGATCCAATCTAGAATGACATGGAGAATGGACCGCGATCATCGGTCAGGTAGCGAGGCACGGTGTGGACTTTGTTTT
TTGTTTTTGTTTTTGTTTTCTTGGCTGATTTGCACTGTGCTTTTCTTTGTTTCTCTAATATGGACTACTACTTTGTATTGCTCTAATGATTGTCTAAGTTAATCAATAGA
ATTACAAACACTGAATATGCAATTAATCCATAAGTTAAGAAGGTACATTTGAGAATTTTCTCTCAAGCATTTTAAA
Protein sequenceShow/hide protein sequence
MARVRVVKLSFLFIRGWLRVFESILVESNQTGLGYLSPDSVPQKIKHFHTSLTFARSVDMGGRRLSVYERLTLKKKAPRNAVETSKGPLTVNVPDLTEDDNLRIRPSIPH
HTSPANCC