; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G013890 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G013890
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMYB transcription factor
Genome locationchr02:19024562..19026544
RNA-Seq ExpressionLsi02G013890
SyntenyLsi02G013890
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR017930 - Myb domain
IPR044676 - MYB-like transcription factor EOBI/EOBII-like, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK01283.1 myb-related protein 305-like protein [Cucumis melo var. makuwa]8.1e-6475.15Show/hide
Query:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPS-LQYTTLPNLSETAILPFN-HCGGPPRPPPSSVNQWPEI
        HLPGRTDNEIKNYWRTRVQKQLRQLKVEANS+RFLDAIHHLS+LEAMDQSSN SLNFPPPS LQ TT PN  ETAI PFN H GG P   P S +QWP+I
Subjt:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPS-LQYTTLPNLSETAILPFN-HCGGPPRPPPSSVNQWPEI

Query:  SEYPQNSCGEFVEAWSFNML----QKQEPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI
        S+ P NSCGEF EAW  NM+    QKQEPVC+LGAWE+ DC+V MAAPDWL+E++MV NLW+LED +LI
Subjt:  SEYPQNSCGEFVEAWSFNML----QKQEPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI

XP_004151034.2 transcription factor MYB24 [Cucumis sativus]7.4e-6576.47Show/hide
Query:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPS-LQYTTLPNLSETAILPFN-HCG-GPPRPPPSSVNQWPE
        HLPGRTDNEIKNYWRTRVQKQLRQLKVEANS+RFLDAIHHLS+LEAMDQSSN SLNFPPPS LQ TT PN  ETAI PFN H G   P   P SV+QWPE
Subjt:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPS-LQYTTLPNLSETAILPFN-HCG-GPPRPPPSSVNQWPE

Query:  ISEYPQNSCGEFVEAWSFNML----QKQEPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI
        IS+ P NSC EF EAW  NM+    QKQEPVC+LGAWE+ DC+VHMAAPDWL+E++MV NLW+LEDHHLI
Subjt:  ISEYPQNSCGEFVEAWSFNML----QKQEPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI

XP_008457536.1 PREDICTED: myb-related protein 305-like [Cucumis melo]3.1e-6374.56Show/hide
Query:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPS-LQYTTLPNLSETAILPFN-HCGGPPRPPPSSVNQWPEI
        HLPGRTDNEIKNYWRTRVQKQLRQLKVEANS+RFLDAIHHLS+LEAMDQSSN SLNFPPPS LQ TT PN  ETAI PFN H GG P   P S +QWP+I
Subjt:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPS-LQYTTLPNLSETAILPFN-HCGGPPRPPPSSVNQWPEI

Query:  SEYPQNSCGEFVEAWSFNML----QKQEPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI
        S+ P +SCGEF EAW  NM+    QKQEPVC+LGAWE+ DC+V MAAPDWL+E++MV NLW+LED +LI
Subjt:  SEYPQNSCGEFVEAWSFNML----QKQEPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI

XP_022949509.1 transcription factor MYB62-like [Cucurbita moschata]7.6e-5469.05Show/hide
Query:  LPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPSLQYTTLPNLS-ETAILPFNHCGG--PPRPPPSSVNQWPEI
        LPGRTDNEIKNYWRTRVQKQLRQLKV+A+SR+ LDAI HLS+LEAMDQ+SN S+N  PPSL    LPN S  T +LP NHC G  PP PPPSSV QWPEI
Subjt:  LPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPSLQYTTLPNLS-ETAILPFNHCGG--PPRPPPSSVNQWPEI

Query:  SEYPQNSCGEFVEAWSFNML-QKQ--EPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI
        S +P + CGEF+EAW F+M+ QKQ  EPV ALG WEV D +  M APDW+LE+AMV NLW+L DHHL+
Subjt:  SEYPQNSCGEFVEAWSFNML-QKQ--EPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI

XP_038895767.1 transcription factor MYB62-like [Benincasa hispida]2.1e-6779.76Show/hide
Query:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPSLQYTTLPNLSETAILPF-NHCGGPPRPPPSSVNQWPEIS
        HLPGRTDNEIKNYWRTRVQKQ RQLKVEA+SRRF D+    SVLEAMDQSSNSSLNFPPPSL  TTLPN SETAILPF NH GG P PP SS NQWPEIS
Subjt:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPSLQYTTLPNLSETAILPF-NHCGGPPRPPPSSVNQWPEIS

Query:  EYPQNSCGEFVEAWSFNML----QKQEPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI
        EYP +SC EFVEAWSFNM+    QKQEP CALGAWEVADC+VHMA  DWLLE+ MV NLW+LEDHH I
Subjt:  EYPQNSCGEFVEAWSFNML----QKQEPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI

TrEMBL top hitse value%identityAlignment
A0A1S3C718 myb-related protein 305-like1.5e-6374.56Show/hide
Query:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPS-LQYTTLPNLSETAILPFN-HCGGPPRPPPSSVNQWPEI
        HLPGRTDNEIKNYWRTRVQKQLRQLKVEANS+RFLDAIHHLS+LEAMDQSSN SLNFPPPS LQ TT PN  ETAI PFN H GG P   P S +QWP+I
Subjt:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPS-LQYTTLPNLSETAILPFN-HCGGPPRPPPSSVNQWPEI

Query:  SEYPQNSCGEFVEAWSFNML----QKQEPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI
        S+ P +SCGEF EAW  NM+    QKQEPVC+LGAWE+ DC+V MAAPDWL+E++MV NLW+LED +LI
Subjt:  SEYPQNSCGEFVEAWSFNML----QKQEPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI

A0A5A7STF0 Myb-related protein 305-like1.5e-6374.56Show/hide
Query:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPS-LQYTTLPNLSETAILPFN-HCGGPPRPPPSSVNQWPEI
        HLPGRTDNEIKNYWRTRVQKQLRQLKVEANS+RFLDAIHHLS+LEAMDQSSN SLNFPPPS LQ TT PN  ETAI PFN H GG P   P S +QWP+I
Subjt:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPS-LQYTTLPNLSETAILPFN-HCGGPPRPPPSSVNQWPEI

Query:  SEYPQNSCGEFVEAWSFNML----QKQEPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI
        S+ P +SCGEF EAW  NM+    QKQEPVC+LGAWE+ DC+V MAAPDWL+E++MV NLW+LED +LI
Subjt:  SEYPQNSCGEFVEAWSFNML----QKQEPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI

A0A5D3BNG6 Myb-related protein 305-like protein3.9e-6475.15Show/hide
Query:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPS-LQYTTLPNLSETAILPFN-HCGGPPRPPPSSVNQWPEI
        HLPGRTDNEIKNYWRTRVQKQLRQLKVEANS+RFLDAIHHLS+LEAMDQSSN SLNFPPPS LQ TT PN  ETAI PFN H GG P   P S +QWP+I
Subjt:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPS-LQYTTLPNLSETAILPFN-HCGGPPRPPPSSVNQWPEI

Query:  SEYPQNSCGEFVEAWSFNML----QKQEPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI
        S+ P NSCGEF EAW  NM+    QKQEPVC+LGAWE+ DC+V MAAPDWL+E++MV NLW+LED +LI
Subjt:  SEYPQNSCGEFVEAWSFNML----QKQEPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI

A0A6J1GD12 transcription factor MYB62-like3.7e-5469.05Show/hide
Query:  LPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPSLQYTTLPNLS-ETAILPFNHCGG--PPRPPPSSVNQWPEI
        LPGRTDNEIKNYWRTRVQKQLRQLKV+A+SR+ LDAI HLS+LEAMDQ+SN S+N  PPSL    LPN S  T +LP NHC G  PP PPPSSV QWPEI
Subjt:  LPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPSLQYTTLPNLS-ETAILPFNHCGG--PPRPPPSSVNQWPEI

Query:  SEYPQNSCGEFVEAWSFNML-QKQ--EPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI
        S +P + CGEF+EAW F+M+ QKQ  EPV ALG WEV D +  M APDW+LE+AMV NLW+L DHHL+
Subjt:  SEYPQNSCGEFVEAWSFNML-QKQ--EPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI

A0A6J1K757 transcription factor MYB24-like4.5e-5265.27Show/hide
Query:  LPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPSLQYTTLPNLS-ETAILPFNH-CGGPPRPPPSSVNQWPEIS
        LPGRTDNEIKNYWRTRVQKQLRQLKV+A+SR+ LDAI HLS+LEAMDQ+SN S+N  PPSL    LPN S  T +LP NH  G PP PPP SV QWPE+S
Subjt:  LPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPSLQYTTLPNLS-ETAILPFNH-CGGPPRPPPSSVNQWPEIS

Query:  EYPQNSCGEFVEAWSFNML---QKQEPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI
         +P + CGEF+E+W F+M+   Q+ EPV A+G WEV D +  M APDW+LE+ MV NLW+L DHHLI
Subjt:  EYPQNSCGEFVEAWSFNML---QKQEPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI

SwissProt top hitse value%identityAlignment
Q10MB4 Transcription factor MYB22.4e-1042.53Show/hide
Query:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHL----------SVLEAMDQSSNSSLNFPPPSLQYTTLPNLSETAILP
        HLPGRTDNEIKNYWRTRVQK  +QLK + NS++F D + +L          +      Q      + PP S Q+     L E+  LP
Subjt:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHL----------SVLEAMDQSSNSSLNFPPPSLQYTTLPNLSETAILP

Q2QZJ8 Transcription factor JAMYB5.4e-1070.73Show/hide
Query:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHL
        HLPGRTDNEIKNYWRTRVQK  +QL  + NS+RF DA+ +L
Subjt:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHL

Q9C9G7 Transcription factor MYB621.3e-1155.56Show/hide
Query:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSV---LEAMDQSSNSSLNFPPP
        +LPGRTDNEIKNYWRTRVQKQ RQL +E+NS +F DA+    V   +E M+Q+S+++  +  P
Subjt:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSV---LEAMDQSSNSSLNFPPP

Q9FGY3 Transcription factor MYB784.6e-0943.59Show/hide
Query:  TYWPNK-----LHLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPSLQYTT
        T W N+      +LPGRTDNEIKNYWRTRVQK  +QLK + NS++F D + +L +   +++   +S+     S   TT
Subjt:  TYWPNK-----LHLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPSLQYTT

Q9LDE1 Transcription factor MYB1085.9e-0945.45Show/hide
Query:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPSLQYTT
        +LPGRTDNEIKNYWRTRVQK  +QLK + NS++F D + +L +   +++  ++S +    +   TT
Subjt:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPSLQYTT

Arabidopsis top hitse value%identityAlignment
AT1G25340.1 myb domain protein 1167.7e-1229.05Show/hide
Query:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHL----SVLEAMDQSSNSSLNFPPPSLQYTTLPNLSETAILPFNH--CGGPPRPPPSSVNQ
        +LPGRTDN+IKNYWRTRVQKQ RQL +++NS +F++ +        + E  D S  +++    P L     P L ++  L FN+  C           +Q
Subjt:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHL----SVLEAMDQSSNSSLNFPPPSLQYTTLPNLSETAILPFNH--CGGPPRPPPSSVNQ

Query:  WPEISEYP-----------QNSCGEFVEAWSFNMLQKQEPVCALGAWEVA---DCNVHMAAPDWLLEEAMVGNLWNLED
        + + S+              + C   V + SF  L+++  V  +G+ +++   DC+V   A     ++     +WN++D
Subjt:  WPEISEYP-----------QNSCGEFVEAWSFNMLQKQEPVCALGAWEVA---DCNVHMAAPDWLLEEAMVGNLWNLED

AT1G25340.2 myb domain protein 1167.7e-1229.05Show/hide
Query:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHL----SVLEAMDQSSNSSLNFPPPSLQYTTLPNLSETAILPFNH--CGGPPRPPPSSVNQ
        +LPGRTDN+IKNYWRTRVQKQ RQL +++NS +F++ +        + E  D S  +++    P L     P L ++  L FN+  C           +Q
Subjt:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHL----SVLEAMDQSSNSSLNFPPPSLQYTTLPNLSETAILPFNH--CGGPPRPPPSSVNQ

Query:  WPEISEYP-----------QNSCGEFVEAWSFNMLQKQEPVCALGAWEVA---DCNVHMAAPDWLLEEAMVGNLWNLED
        + + S+              + C   V + SF  L+++  V  +G+ +++   DC+V   A     ++     +WN++D
Subjt:  WPEISEYP-----------QNSCGEFVEAWSFNMLQKQEPVCALGAWEVA---DCNVHMAAPDWLLEEAMVGNLWNLED

AT1G48000.1 myb domain protein 1125.0e-1170.73Show/hide
Query:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHL
        HLPGRTDNEIKNYWRTRVQK  + LK + NS++F D I HL
Subjt:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHL

AT1G68320.1 myb domain protein 629.1e-1355.56Show/hide
Query:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSV---LEAMDQSSNSSLNFPPP
        +LPGRTDNEIKNYWRTRVQKQ RQL +E+NS +F DA+    V   +E M+Q+S+++  +  P
Subjt:  HLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSV---LEAMDQSSNSSLNFPPP

AT5G49620.1 myb domain protein 783.2e-1043.59Show/hide
Query:  TYWPNK-----LHLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPSLQYTT
        T W N+      +LPGRTDNEIKNYWRTRVQK  +QLK + NS++F D + +L +   +++   +S+     S   TT
Subjt:  TYWPNK-----LHLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPSLQYTT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGGTCAATGGAACATATTGGCCAAACAAGCTGCATCTACCAGGAAGAACGGATAACGAGATCAAGAACTACTGGAGAACCAGAGTTCAAAAACAGTTACGCCA
GCTTAAAGTTGAGGCAAACAGCAGGAGATTTTTGGATGCAATTCATCATTTGAGTGTGCTAGAAGCCATGGACCAATCCTCCAACTCCTCCCTCAATTTTCCTCCTCCAT
CTCTCCAATACACAACCTTACCGAACTTGTCAGAAACCGCCATTCTTCCATTCAACCACTGCGGCGGACCTCCTCGTCCGCCGCCAAGTTCAGTCAACCAATGGCCTGAA
ATCTCAGAATACCCACAAAATTCTTGTGGTGAATTTGTGGAAGCTTGGAGCTTTAACATGCTGCAGAAACAAGAGCCAGTTTGTGCATTGGGTGCTTGGGAAGTTGCAGA
TTGTAATGTCCACATGGCAGCACCTGATTGGCTGTTGGAAGAGGCAATGGTTGGAAACTTATGGAATTTGGAGGATCATCACTTGATATAA
mRNA sequenceShow/hide mRNA sequence
TGTTTTTTCACATCTCTCTCAATAATTATAATATCCTCTTTGTCTTTATAGTTTTCTCTCTATGGAAAATTTGTCAAAAAGTGAAAATAACAAGCCAAGTGAGGAAGAAA
GTGAACTAAGAAGAGGGCCATGGACTATTGAAGAAGACACATTGTTGATTCATTATATTGCTGGTCATGGAGAAGGTCAATGGAACATATTGGCCAAACAAGCTGCATCT
ACCAGGAAGAACGGATAACGAGATCAAGAACTACTGGAGAACCAGAGTTCAAAAACAGTTACGCCAGCTTAAAGTTGAGGCAAACAGCAGGAGATTTTTGGATGCAATTC
ATCATTTGAGTGTGCTAGAAGCCATGGACCAATCCTCCAACTCCTCCCTCAATTTTCCTCCTCCATCTCTCCAATACACAACCTTACCGAACTTGTCAGAAACCGCCATT
CTTCCATTCAACCACTGCGGCGGACCTCCTCGTCCGCCGCCAAGTTCAGTCAACCAATGGCCTGAAATCTCAGAATACCCACAAAATTCTTGTGGTGAATTTGTGGAAGC
TTGGAGCTTTAACATGCTGCAGAAACAAGAGCCAGTTTGTGCATTGGGTGCTTGGGAAGTTGCAGATTGTAATGTCCACATGGCAGCACCTGATTGGCTGTTGGAAGAGG
CAATGGTTGGAAACTTATGGAATTTGGAGGATCATCACTTGATATAA
Protein sequenceShow/hide protein sequence
MEKVNGTYWPNKLHLPGRTDNEIKNYWRTRVQKQLRQLKVEANSRRFLDAIHHLSVLEAMDQSSNSSLNFPPPSLQYTTLPNLSETAILPFNHCGGPPRPPPSSVNQWPE
ISEYPQNSCGEFVEAWSFNMLQKQEPVCALGAWEVADCNVHMAAPDWLLEEAMVGNLWNLEDHHLI