; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G014020 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G014020
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTHO complex subunit 4A
Genome locationchr02:19254303..19257647
RNA-Seq ExpressionLsi02G014020
SyntenyLsi02G014020
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR025715 - Chromatin target of PRMT1 protein, C-terminal
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583468.1 THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. sororia]1.9e-11490.76Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNR APYSTA+APETAWSHDMFVD GAAYPSQP RASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGK MKLEIVGTN VTPA+PAS+N +FGNPNGF RGG  LGR RGGGR
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR

Query:  GRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN
        GRGPGRGGRGRGS       S RGRGEKLSAEDLDADLEKYHEEAMQIN
Subjt:  GRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN

XP_004149042.2 THO complex subunit 4A isoform X1 [Cucumis sativus]3.9e-12094Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNR  PYST+KAPETAWSHDMFVD GAAYPS PPRASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR
        EDIKELFSEVGD+KRYSINYDKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGKPMKLEIVGTN VTPAVPA SNASFGNPNGFPRGGRA+GR RGGGR
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR

Query:  GRGPGRG-GRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN
        GRGPGRG GRGRGSGSGSGSGSGRG GEKLSAEDLDADL+KYHEEAMQIN
Subjt:  GRGPGRG-GRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN

XP_008457549.1 PREDICTED: THO complex subunit 4A [Cucumis melo]4.0e-11792.37Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNR  PYST+KAPETAWSHDMFVD GAAYPS PPRASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEI+FSR +DALAAIKRYNNVQLDGKPMKLEIVGTN VTPAVPA SNASFGN NGFPRGGRA+GR RGGGR
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR

Query:  GRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN
        GRGPGRGGRGR    GSGSGSGRGRGEKLSAEDLDADL+KYHEEAMQIN
Subjt:  GRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN

XP_022964653.1 THO complex subunit 4B-like [Cucurbita moschata]3.2e-11490.76Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNR APYSTA+APETAWSHDMFVD G+AYPSQP RASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGK MKLEIVGTN VTPAVPAS+N +FGNPNGF RGG  LGR RGGGR
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR

Query:  GRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN
        GRGPGRGGRGRGS       S RGRGEKLSAEDLDADLEKYHEEAMQIN
Subjt:  GRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN

XP_038895300.1 THO complex subunit 4A-like [Benincasa hispida]7.8e-12195.18Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNR APYS AKAPETAWSHDMFVD GAAYPSQPPRASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTN VTPAVPASSNA FGNPNGFPRGGRALGR RGGGR
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR

Query:  GRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN
        GRGPGRGGRGR      GSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN
Subjt:  GRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN

TrEMBL top hitse value%identityAlignment
A0A0A0LUQ3 RRM domain-containing protein1.9e-12094Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNR  PYST+KAPETAWSHDMFVD GAAYPS PPRASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR
        EDIKELFSEVGD+KRYSINYDKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGKPMKLEIVGTN VTPAVPA SNASFGNPNGFPRGGRA+GR RGGGR
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR

Query:  GRGPGRG-GRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN
        GRGPGRG GRGRGSGSGSGSGSGRG GEKLSAEDLDADL+KYHEEAMQIN
Subjt:  GRGPGRG-GRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN

A0A1S3C5R6 THO complex subunit 4A1.9e-11792.37Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNR  PYST+KAPETAWSHDMFVD GAAYPS PPRASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEI+FSR +DALAAIKRYNNVQLDGKPMKLEIVGTN VTPAVPA SNASFGN NGFPRGGRA+GR RGGGR
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR

Query:  GRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN
        GRGPGRGGRGR    GSGSGSGRGRGEKLSAEDLDADL+KYHEEAMQIN
Subjt:  GRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN

A0A6J1G9Y5 THO complex subunit 4A-like isoform X21.8e-10785.54Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN
        M +PLD SLDDIIKNNKKSGSSNFRGRGGASSGP PSRRF NRGLNR APYS AKAPET WSHD+FVD G AYPS P RAS IETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAE+VFSRQ+DALAAIKRYNNVQLDGKPMKLEIVG N VTP +PASSN +FGN +GF RGGRALGR RGGGR
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR

Query:  GRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN
        GRGPGRGGRGR        G+GRG GEKLSAEDLDADLEKYHEEAMQIN
Subjt:  GRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN

A0A6J1HLI4 THO complex subunit 4B-like1.5e-11490.76Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNR APYSTA+APETAWSHDMFVD G+AYPSQP RASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGK MKLEIVGTN VTPAVPAS+N +FGNPNGF RGG  LGR RGGGR
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR

Query:  GRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN
        GRGPGRGGRGRGS       S RGRGEKLSAEDLDADLEKYHEEAMQIN
Subjt:  GRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN

A0A6J1I3N4 THO complex subunit 4A-like3.4e-11490.76Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNR APYSTA+APETAWSHDMFVD GAAYPSQP RASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGK MKLEIVGTN VTPAVPAS+N +FGNPNGF RGG  LGR RGGGR
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGR

Query:  GRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN
        GRGPGRGGRG GS       S RGRGEKLSAEDLDADLEKYHEEAMQIN
Subjt:  GRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN

SwissProt top hitse value%identityAlignment
B5FXN8 THO complex subunit 42.1e-3944.53Show/hide
Query:  MAEPLDMSLDDIIKNNKKS-----GSSNFRGRGGASSGPGPSR-----------RFRNR-------GLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQP
        MA+ +DMSLDDIIK N+       G    RGRGG + G GP R             RNR       G NRPAPYS  K     W HD+F D G       
Subjt:  MAEPLDMSLDDIIKNNKKS-----GSSNFRGRGGASSGPGPSR-----------RFRNR-------GLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQP

Query:  PRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNA
           + +ETG KL VSNLD+GVS+ DI+ELF+E G LK+ +++YD+SGRS GTA++ F R++DAL A+K+YN V LDG+PM +++V +   T   PA S  
Subjt:  PRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNA

Query:  SFGNPNGFPRGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYH
           N  G  R    LG   GGG  RG   G RGR      G G+GR   ++LSAE+LDA L+ Y+
Subjt:  SFGNPNGFPRGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYH

O08583 THO complex subunit 42.8e-3642.7Show/hide
Query:  MAEPLDMSLDDIIKNNKKS----GSSNFRGRGGASSGPGPSRR-----------FRNR----------GLNRPAPYSTAKAPETAWSHDMFVDQGAAYPS
        MA+ +DMSLDDIIK N+      G    RGR G+  G G + +            RNR          G NRPAPYS  K     W HD+F D G     
Subjt:  MAEPLDMSLDDIIKNNKKS----GSSNFRGRGGASSGPGPSRR-----------FRNR----------GLNRPAPYSTAKAPETAWSHDMFVDQGAAYPS

Query:  QPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASS
             + +ETG KL VSNLD+GVS+ DI+ELF+E G LK+ +++YD+SGRS GTA++ F R++DAL A+K+YN V LDG+PM +++V +   T   PA S
Subjt:  QPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASS

Query:  NASFGNPNGFPRGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYH
                   RGG    R  GG  G G  RG   RG   G G G+GR   ++LSAE+LDA L+ Y+
Subjt:  NASFGNPNGFPRGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYH

Q6NQ72 THO complex subunit 4D4.1e-4043.3Show/hide
Query:  MAEPLDMSLDDIIKNNK--KSGSSNF-----RGRGGASSGPGPSRRFRNRGLNRPAPYSTAK----APETAWSHDMFVDQGAAYPSQPPRASAIETGTKL
        M+  L+M+LD+I+K  K  +SG         RGRGG   G GP+RR       RP+ ++  K         W   +F D   A       AS +E GT+L
Subjt:  MAEPLDMSLDDIIKNNK--KSGSSNF-----RGRGGASSGPGPSRRFRNRGLNRPAPYSTAK----APETAWSHDMFVDQGAAYPSQPPRASAIETGTKL

Query:  YVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPA-VPASSNASFGNPNG----
        +V+NLD GV+NEDI+ELFSE+G+++RY+I+YDK+GR  GTAE+V+ R+SDA  A+K+YNNV LDG+PM+LEI+G N  + A +    N +    NG    
Subjt:  YVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPA-VPASSNASFGNPNG----

Query:  ---FPRGGRALGRIRGGGRGRGP--------------------GRGG---RGRGSGSGSGSGSGRGRGEK---LSAEDLDADLEKYHEEAM
             +GG   GR+RGG  GRGP                    GRGG   RGRG+G G G G GRG G+K    SA DLD DLE YH +AM
Subjt:  ---FPRGGRALGRIRGGGRGRGP--------------------GRGG---RGRGSGSGSGSGSGRGRGEK---LSAEDLDADLEKYHEEAM

Q8L719 THO complex subunit 4B3.3e-6154.98Show/hide
Query:  MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYS----TAKAPETAWSHDMFVDQ---GAAYPSQPPR----
        M+  LDMSLDDIIK+N+K           G +N  GRGG+ S  GPSRRF NR   R APYS      +A +  W +D+F       AA+          
Subjt:  MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYS----TAKAPETAWSHDMFVDQ---GAAYPSQPPR----

Query:  ASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASF
         S+IETGTKLY+SNLDYGVSNEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+EIVGTN   PA+P  + A  
Subjt:  ASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASF

Query:  --------------------GNPNGFPRG---GRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQ
                            GN NG  RG   G  +GR RGGG G G  RGGRG     G GSG GRGR E +SAEDLDA+L+KYH+EAM+
Subjt:  --------------------GNPNGFPRG---GRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQ

Q8L773 THO complex subunit 4A3.1e-6461.26Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASA-IETGTKLYVSNLDYG
        M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R APY +AKAPE+ W HDMF D+   + S   R+SA IETGTKLY+SNLDYG
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASA-IETGTKLYVSNLDYG

Query:  VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFP-RGGRALGRIR
        V NEDIKELF+EVG+LKRY++++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVGTN  T A P+   A+ GN NG P RGG+  GR  
Subjt:  VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFP-RGGRALGRIR

Query:  GGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN
         GG+ RG GRGG GRG G G G   G+G  EK+SAEDLDADL+KYH   M+ N
Subjt:  GGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN

Arabidopsis top hitse value%identityAlignment
AT5G02530.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.3e-6254.98Show/hide
Query:  MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYS----TAKAPETAWSHDMFVDQ---GAAYPSQPPR----
        M+  LDMSLDDIIK+N+K           G +N  GRGG+ S  GPSRRF NR   R APYS      +A +  W +D+F       AA+          
Subjt:  MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYS----TAKAPETAWSHDMFVDQ---GAAYPSQPPR----

Query:  ASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASF
         S+IETGTKLY+SNLDYGVSNEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+EIVGTN   PA+P  + A  
Subjt:  ASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASF

Query:  --------------------GNPNGFPRG---GRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQ
                            GN NG  RG   G  +GR RGGG G G  RGGRG     G GSG GRGR E +SAEDLDA+L+KYH+EAM+
Subjt:  --------------------GNPNGFPRG---GRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQ

AT5G02530.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.4e-6255.36Show/hide
Query:  MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYS----TAKAPETAWSHDMFVDQ---GAAYPSQPPR----
        M+  LDMSLDDIIK+N+K           G +N  GRGG+ S  GPSRRF NR   R APYS      +A +  W +D+F       AA+          
Subjt:  MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYS----TAKAPETAWSHDMFVDQ---GAAYPSQPPR----

Query:  ASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASF
         S+IETGTKLY+SNLDYGVSNEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+EIVGTN   PA+P  + A  
Subjt:  ASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASF

Query:  --------------------GNPNGFPRG-GRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQ
                            GN NG  RG G  +GR RGGG G G  RGGRG     G GSG GRGR E +SAEDLDA+L+KYH+EAM+
Subjt:  --------------------GNPNGFPRG-GRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQ

AT5G59950.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.2e-6561.26Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASA-IETGTKLYVSNLDYG
        M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R APY +AKAPE+ W HDMF D+   + S   R+SA IETGTKLY+SNLDYG
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASA-IETGTKLYVSNLDYG

Query:  VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFP-RGGRALGRIR
        V NEDIKELF+EVG+LKRY++++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVGTN  T A P+   A+ GN NG P RGG+  GR  
Subjt:  VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFP-RGGRALGRIR

Query:  GGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN
         GG+ RG GRGG GRG G G G   G+G  EK+SAEDLDADL+KYH   M+ N
Subjt:  GGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN

AT5G59950.3 RNA-binding (RRM/RBD/RNP motifs) family protein7.9e-6360.47Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASA-IETGTKLYVSNLDYG
        M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R APY +  APE+ W HDMF D+   + S   R+SA IETGTKLY+SNLDYG
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASA-IETGTKLYVSNLDYG

Query:  VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFP-RGGRALGRIR
        V NEDIKELF+EVG+LKRY++++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVGTN  T A P+   A+ GN NG P RGG+  GR  
Subjt:  VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFP-RGGRALGRIR

Query:  GGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN
         GG+ RG GRGG GRG G G G   G+G  EK+SAEDLDADL+KYH   M+ N
Subjt:  GGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN

AT5G59950.5 RNA-binding (RRM/RBD/RNP motifs) family protein2.9e-6561.02Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASA-IETGTKLYVSNLDYG
        M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R APY +AKAPE+ W HDMF D+   + S   R+SA IETGTKLY+SNLDYG
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASA-IETGTKLYVSNLDYG

Query:  VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFP--RGGRALGRI
        V NEDIKELF+EVG+LKRY++++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVGTN  T A P+   A+ GN NG P  RGG+  GR 
Subjt:  VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFP--RGGRALGRI

Query:  RGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN
          GG+ RG GRGG GRG G G G   G+G  EK+SAEDLDADL+KYH   M+ N
Subjt:  RGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAGCCTCTCGACATGAGCTTAGATGATATCATCAAGAACAACAAGAAATCGGGATCCTCAAACTTCAGAGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCTTC
TCGCCGCTTTCGCAATCGCGGTCTTAATAGACCAGCGCCTTATTCTACTGCCAAGGCGCCCGAGACGGCTTGGTCACACGACATGTTTGTAGATCAGGGTGCGGCATATC
CTTCACAGCCTCCACGGGCCTCTGCTATTGAAACTGGCACTAAGCTTTATGTTTCTAATTTGGATTATGGTGTCTCCAACGAGGATATCAAGGAACTGTTTTCTGAAGTT
GGTGATCTCAAACGGTATTCAATCAATTATGATAAAAGTGGGAGATCAAAGGGAACAGCAGAAATTGTTTTTTCACGACAATCAGATGCTCTTGCTGCTATAAAGAGATA
CAACAATGTTCAGCTAGATGGGAAACCCATGAAGTTGGAGATTGTTGGAACTAACACCGTGACACCTGCTGTGCCTGCTTCTTCAAATGCCAGTTTTGGGAATCCAAATG
GATTTCCGAGAGGTGGACGTGCCCTGGGTCGAATCCGGGGTGGTGGACGAGGACGTGGACCTGGAAGAGGAGGGCGTGGACGTGGGAGTGGGAGTGGGAGTGGGAGTGGG
AGTGGCAGAGGTCGTGGAGAGAAGTTATCGGCCGAAGACCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCGATGCAGATCAATTAA
mRNA sequenceShow/hide mRNA sequence
GACACCTGTCTTTGAAATGAGTTGTCCATTCATTCATTTTATAATTAGAAAGGGAAAAAAAAGATGAAAGAACCCGTATTTTGATACCACGAAGTTCTTCGCAATTGGCT
TCTTCCCCGATTGCTCACAAACAACACATCGTTCCGTCGGAACCCTAGAAATTGTGTCTCCTCTCTGAATCTCTGATCCACCACCACCATGGCAGAGCCTCTCGACATGA
GCTTAGATGATATCATCAAGAACAACAAGAAATCGGGATCCTCAAACTTCAGAGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCTTCTCGCCGCTTTCGCAATCGCGGT
CTTAATAGACCAGCGCCTTATTCTACTGCCAAGGCGCCCGAGACGGCTTGGTCACACGACATGTTTGTAGATCAGGGTGCGGCATATCCTTCACAGCCTCCACGGGCCTC
TGCTATTGAAACTGGCACTAAGCTTTATGTTTCTAATTTGGATTATGGTGTCTCCAACGAGGATATCAAGGAACTGTTTTCTGAAGTTGGTGATCTCAAACGGTATTCAA
TCAATTATGATAAAAGTGGGAGATCAAAGGGAACAGCAGAAATTGTTTTTTCACGACAATCAGATGCTCTTGCTGCTATAAAGAGATACAACAATGTTCAGCTAGATGGG
AAACCCATGAAGTTGGAGATTGTTGGAACTAACACCGTGACACCTGCTGTGCCTGCTTCTTCAAATGCCAGTTTTGGGAATCCAAATGGATTTCCGAGAGGTGGACGTGC
CCTGGGTCGAATCCGGGGTGGTGGACGAGGACGTGGACCTGGAAGAGGAGGGCGTGGACGTGGGAGTGGGAGTGGGAGTGGGAGTGGGAGTGGCAGAGGTCGTGGAGAGA
AGTTATCGGCCGAAGACCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCGATGCAGATCAATTAA
Protein sequenceShow/hide protein sequence
MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEV
GDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSG
SGRGRGEKLSAEDLDADLEKYHEEAMQIN