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Lsi02G014460 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G014460
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontetraspanin-3-like
Genome locationchr02:20129891..20130181
RNA-Seq ExpressionLsi02G014460
SyntenyLsi02G014460
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0009506 - plasmodesma (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0022857 - transmembrane transporter activity (molecular function)
InterPro domainsIPR044991 - Tetraspani, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147271.1 tetraspanin-3 [Cucumis sativus]1.0e-4493.75Show/hide
Query:  MWDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI
        MWDFGGGLVG  PDCGRWSNDQ QLCYACDSCKA VLASLKKSWRKVSVINII LIILVISYV+GYAAFRNNRRIDNDEPASTARMTKSKPSWFNI
Subjt:  MWDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI

XP_008463449.1 PREDICTED: tetraspanin-3-like [Cucumis melo]2.9e-4797.92Show/hide
Query:  MWDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI
        MWDFGGGLVGA PDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYV+GYAAFRNNRRIDNDEPASTARMTKSKPSWFNI
Subjt:  MWDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI

XP_022998885.1 tetraspanin-3-like [Cucurbita maxima]1.1e-4388.42Show/hide
Query:  WDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI
        WD GGG+VG  PDCGRWSNDQDQLCYACDSCKAGVLA+LKKSWRKVSV+NIIVLI+LV+SYV+GYAAFRNNRRIDNDEPASTARMTKSKP WFN+
Subjt:  WDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI

XP_023521528.1 tetraspanin-3-like [Cucurbita pepo subsp. pepo]9.6e-4387.37Show/hide
Query:  WDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI
        WD GGG+VG  PDCGRWSNDQDQLCYACDSCKAGVLA+LKKSWRKVSV+NIIVLI+LVISYV+GYA FRNNRRIDN+EPASTARMTKSKP WFN+
Subjt:  WDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI

XP_038893969.1 tetraspanin-3-like [Benincasa hispida]1.4e-4697.92Show/hide
Query:  MWDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI
        MWDFGGGLVGA PDCGRWSNDQ QLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI
Subjt:  MWDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI

TrEMBL top hitse value%identityAlignment
A0A0A0LS61 Uncharacterized protein5.0e-4593.75Show/hide
Query:  MWDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI
        MWDFGGGLVG  PDCGRWSNDQ QLCYACDSCKA VLASLKKSWRKVSVINII LIILVISYV+GYAAFRNNRRIDNDEPASTARMTKSKPSWFNI
Subjt:  MWDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI

A0A1S3CJB4 tetraspanin-3-like1.4e-4797.92Show/hide
Query:  MWDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI
        MWDFGGGLVGA PDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYV+GYAAFRNNRRIDNDEPASTARMTKSKPSWFNI
Subjt:  MWDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI

A0A6J1G9E4 tetraspanin-3-like7.9e-4386.32Show/hide
Query:  WDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI
        WD GGG+VG  PDCGRWSNDQDQLCYACDSCKAGVLA+LKKSWRKVSV+NIIVLI+LV+SYV+GYAAFRNNRRIDN+EPASTARMTKSKP WF++
Subjt:  WDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI

A0A6J1I2T9 tetraspanin-3-like1.1e-4187.5Show/hide
Query:  MWDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI
        +WD GGGLVG  PDC RWSNDQ QLCYACDSCKAGVLASLKKSWRKVSVINI+VLIILVISYVVGYAAFRNNRR+DNDEPA +ARMTK KP WFNI
Subjt:  MWDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI

A0A6J1KDR8 tetraspanin-3-like5.5e-4488.42Show/hide
Query:  WDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI
        WD GGG+VG  PDCGRWSNDQDQLCYACDSCKAGVLA+LKKSWRKVSV+NIIVLI+LV+SYV+GYAAFRNNRRIDNDEPASTARMTKSKP WFN+
Subjt:  WDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI

SwissProt top hitse value%identityAlignment
Q84WF6 Tetraspanin-53.0e-1545.12Show/hide
Query:  PDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDN-DEPASTARMTKSKPSW
        PDC RW+N    LCY CD+C+AGVL ++++ W K+S++N+IV+I L+  Y VG  AF+N +R  +   P     M+KS+P W
Subjt:  PDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDN-DEPASTARMTKSKPSW

Q8S8Q6 Tetraspanin-84.0e-1550.77Show/hide
Query:  PDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDN
        PDC  W N +++LC+ C SCKAG+L ++K +W+KV+++NI+ L+ L+I Y VG  AFRNN+R D+
Subjt:  PDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDN

Q9C7C1 Tetraspanin-61.5e-1743.96Show/hide
Query:  FGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDND-EPASTARMTKSKPSW
        +  G+V    DC RW+N  + LCY CD+CKAGVL  ++  WRK+SV+NI+VL++L+  Y  G  AF N R   +   P+   RMT+ +P W
Subjt:  FGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDND-EPASTARMTKSKPSW

Q9LSS4 Tetraspanin-48.5e-2665.52Show/hide
Query:  MWDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMT
        +W  GG +VG  PDC  W+NDQ  LCY C SCKAGVL SLKKSWRKVSVINI+V+IILVI YV+  AA++N +R+ NDEP   ARMT
Subjt:  MWDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMT

Q9M1E7 Tetraspanin-33.2e-3371.58Show/hide
Query:  WDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI
        WD  GG++G   DC  WSNDQ  LCY C SCKAGVL SLKKSWRKVSVINI+VLIILVI YV+ YAA+RN +RIDNDEPA  ARMTKS PS F++
Subjt:  WDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI

Arabidopsis top hitse value%identityAlignment
AT2G23810.1 tetraspanin82.8e-1650.77Show/hide
Query:  PDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDN
        PDC  W N +++LC+ C SCKAG+L ++K +W+KV+++NI+ L+ L+I Y VG  AFRNN+R D+
Subjt:  PDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDN

AT3G12090.1 tetraspanin61.0e-1843.96Show/hide
Query:  FGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDND-EPASTARMTKSKPSW
        +  G+V    DC RW+N  + LCY CD+CKAGVL  ++  WRK+SV+NI+VL++L+  Y  G  AF N R   +   P+   RMT+ +P W
Subjt:  FGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDND-EPASTARMTKSKPSW

AT3G45600.1 tetraspanin32.3e-3471.58Show/hide
Query:  WDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI
        WD  GG++G   DC  WSNDQ  LCY C SCKAGVL SLKKSWRKVSVINI+VLIILVI YV+ YAA+RN +RIDNDEPA  ARMTKS PS F++
Subjt:  WDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI

AT4G23410.1 tetraspanin52.2e-1645.12Show/hide
Query:  PDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDN-DEPASTARMTKSKPSW
        PDC RW+N    LCY CD+C+AGVL ++++ W K+S++N+IV+I L+  Y VG  AF+N +R  +   P     M+KS+P W
Subjt:  PDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDN-DEPASTARMTKSKPSW

AT5G60220.1 tetraspanin46.0e-2765.52Show/hide
Query:  MWDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMT
        +W  GG +VG  PDC  W+NDQ  LCY C SCKAGVL SLKKSWRKVSVINI+V+IILVI YV+  AA++N +R+ NDEP   ARMT
Subjt:  MWDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGATTTTGGAGGAGGACTAGTAGGGGCAGCGCCTGATTGTGGAAGGTGGAGCAATGACCAAGACCAACTTTGCTATGCTTGTGACTCTTGCAAGGCTGGGGTTCT
AGCTAGTCTCAAGAAGAGTTGGCGGAAGGTCTCCGTCATTAACATCATTGTCTTGATCATTCTTGTCATCTCTTACGTCGTTGGCTATGCAGCCTTTCGAAACAATCGTC
GTATCGACAATGACGAACCTGCTAGCACTGCTCGTATGACCAAATCGAAACCGAGTTGGTTTAACATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGATTTTGGAGGAGGACTAGTAGGGGCAGCGCCTGATTGTGGAAGGTGGAGCAATGACCAAGACCAACTTTGCTATGCTTGTGACTCTTGCAAGGCTGGGGTTCT
AGCTAGTCTCAAGAAGAGTTGGCGGAAGGTCTCCGTCATTAACATCATTGTCTTGATCATTCTTGTCATCTCTTACGTCGTTGGCTATGCAGCCTTTCGAAACAATCGTC
GTATCGACAATGACGAACCTGCTAGCACTGCTCGTATGACCAAATCGAAACCGAGTTGGTTTAACATTTGA
Protein sequenceShow/hide protein sequence
MWDFGGGLVGAAPDCGRWSNDQDQLCYACDSCKAGVLASLKKSWRKVSVINIIVLIILVISYVVGYAAFRNNRRIDNDEPASTARMTKSKPSWFNI