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Lsi02G014510 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G014510
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA-directed RNA polymerases I and III subunit RPAC2
Genome locationchr02:20196548..20197041
RNA-Seq ExpressionLsi02G014510
SyntenyLsi02G014510
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain
IPR033898 - DNA-directed RNA polymerases I and III subunit AC19
IPR036603 - RNA polymerase, RBP11-like subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031779.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo var. makuwa]9.3e-2695.08Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIR+QT G+
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN

XP_008457416.1 PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo]9.3e-2695.08Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIR+QT G+
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN

XP_022150895.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Momordica charantia]7.9e-2591.8Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN
        MEHGSF+DE+KSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIR+QT G+
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN

XP_023522054.1 DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp. pepo]3.5e-2591.8Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN
        MEHGSFTDETKSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIR+QT G+
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN

XP_038893936.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida]9.3e-2695.08Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIR+QT G+
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN

TrEMBL top hitse value%identityAlignment
A0A0A0LUT5 RNA_pol_L_2 domain-containing protein3.8e-2591.8Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN
        MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIR+QT G+
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN

A0A1S3C5G1 DNA-directed RNA polymerases I and III subunit RPAC24.5e-2695.08Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIR+QT G+
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN

A0A5A7SR68 DNA-directed RNA polymerases I and III subunit RPAC24.5e-2695.08Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIR+QT G+
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN

A0A5D3BBZ7 DNA-directed RNA polymerases I and III subunit RPAC24.5e-2695.08Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIR+QT G+
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN

A0A6J1D9Q8 DNA-directed RNA polymerases I and III subunit RPAC23.8e-2591.8Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN
        MEHGSF+DE+KSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIR+QT G+
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN

SwissProt top hitse value%identityAlignment
P0DPB6 DNA-directed RNA polymerases I and III subunit RPAC25.1e-1146.77Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGNI
        M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+RIQT G +
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGNI

P28000 DNA-directed RNA polymerases I and III subunit RPAC28.5e-1462.26Show/hide
Query:  DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIG
        D T ++F + +EDHTL NALRY + ++P V FCGYSIPHPS+N +NIRIQT G
Subjt:  DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIG

Q09177 DNA-directed RNA polymerases I and III subunit RPAC24.7e-1256.36Show/hide
Query:  GSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQT
        G   D T  TF +  EDHTL N+LRY + ++P V FCGYSIPHPS+ ++N RIQT
Subjt:  GSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQT

Q1RMG8 DNA-directed RNA polymerases I and III subunit RPAC26.7e-1148.33Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIG
        M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+RIQT G
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIG

Q54ES6 DNA-directed RNA polymerases I and III subunit rpc191.1e-1366.67Show/hide
Query:  STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGNI
        +TF   DEDHTL NAL Y L ++P+V F GYSIPHPSDNR+N+RIQT  NI
Subjt:  STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGNI

Arabidopsis top hitse value%identityAlignment
AT2G29540.1 RNApolymerase 14 kDa subunit2.6e-1862.3Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN
        MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIR+QT G+
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN

AT2G29540.2 RNApolymerase 14 kDa subunit2.6e-1862.3Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN
        MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIR+QT G+
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGN

AT2G29540.3 RNApolymerase 14 kDa subunit2.8e-0462.96Show/hide
Query:  PRVTFCGYSIPHPSDNRVNIRIQTIGN
        PRVT   Y+IPHPS  +VNIR+QT G+
Subjt:  PRVTFCGYSIPHPSDNRVNIRIQTIGN

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like2.3e-0637.93Show/hide
Query:  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQT
        S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +RI T
Subjt:  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQT

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like2.5e-0536.36Show/hide
Query:  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIR
        S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R
Subjt:  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGATCCAAGAGT
GACATTTTGTGGATACAGCATTCCTCATCCTTCAGATAATCGAGTTAATATTCGAATCCAGACAATAGGTAATATTTTGAAA
mRNA sequenceShow/hide mRNA sequence
CAATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGATCCAAGA
GTGACATTTTGTGGATACAGCATTCCTCATCCTTCAGATAATCGAGTTAATATTCGAATCCAGACAATAGGTAATATTTTGAAA
Protein sequenceShow/hide protein sequence
MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRIQTIGNILK