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Lsi02G014580 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G014580
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein 230
Genome locationchr02:20301306..20303823
RNA-Seq ExpressionLsi02G014580
SyntenyLsi02G014580
Gene Ontology termsGO:0005768 - endosome (cellular component)
GO:0005776 - autophagosome (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR008590 - Transmembrane protein 230/134
IPR044234 - Transmembrane protein 230


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459349.1 PREDICTED: transmembrane protein 230 [Cucumis melo]2.4e-5695.69Show/hide
Query:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
        MASRRN+RYSSLA DDND+DSEGSR+DPRFYYTPKAFDKIPWKSIALA+FLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGYRFASIPDY
Subjt:  AWRGANGYRFASIPDY

XP_022961740.1 transmembrane protein 230-like [Cucurbita moschata]7.0e-5696.55Show/hide
Query:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
        MASRRNVRYSSLA DDNDLD EGS+YDPRFYYTPKAFDKIPWKSIALALFLLLLGS LLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGYRFASIPDY
Subjt:  AWRGANGYRFASIPDY

XP_022990725.1 transmembrane protein 230-like [Cucurbita maxima]7.8e-5595.69Show/hide
Query:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
        MASRR+VRYSSLA DDNDLD EGS+YDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGY FASIPDY
Subjt:  AWRGANGYRFASIPDY

XP_023521905.1 transmembrane protein 230-like [Cucurbita pepo subsp. pepo]2.4e-5697.41Show/hide
Query:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
        MASRRNVRYSSLA DDNDLD EGS+YDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGYRFASIPDY
Subjt:  AWRGANGYRFASIPDY

XP_038889462.1 transmembrane protein 230 [Benincasa hispida]7.8e-5594.83Show/hide
Query:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
        MASRRNVRY SLA DDNDLDSEGS YDPRFYYTPKAFDKIPWKSIALA+FLL+LG LLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGYRFASIPDY
Subjt:  AWRGANGYRFASIPDY

TrEMBL top hitse value%identityAlignment
A0A0A0KXG1 Transmembrane protein 2301.9e-5493.1Show/hide
Query:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
        MASRRNVRYS L  DDND+DSEG++ DPRFYYTPKAFDKIPWKSIALA+FLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGYRFASIPDY
Subjt:  AWRGANGYRFASIPDY

A0A1S3C9X7 Transmembrane protein 2301.2e-5695.69Show/hide
Query:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
        MASRRN+RYSSLA DDND+DSEGSR+DPRFYYTPKAFDKIPWKSIALA+FLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGYRFASIPDY
Subjt:  AWRGANGYRFASIPDY

A0A6J1HAY7 Transmembrane protein 2303.4e-5696.55Show/hide
Query:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
        MASRRNVRYSSLA DDNDLD EGS+YDPRFYYTPKAFDKIPWKSIALALFLLLLGS LLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGYRFASIPDY
Subjt:  AWRGANGYRFASIPDY

A0A6J1JQW3 Transmembrane protein 2303.8e-5595.69Show/hide
Query:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
        MASRR+VRYSSLA DDNDLD EGS+YDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGY FASIPDY
Subjt:  AWRGANGYRFASIPDY

A0A6J1K312 Transmembrane protein 2305.4e-5491.38Show/hide
Query:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
        MASRRNVRYSSL+ DDNDLD +G+++DPRFYYTPKAFDKIPWKSIALA+FLL LGS LLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGYRFASIPDY
Subjt:  AWRGANGYRFASIPDY

SwissProt top hitse value%identityAlignment
Q5BJP5 Transmembrane protein 2304.5e-1340.18Show/hide
Query:  VRYSSL-APDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
        V+YS L + DD  +D +  +  P          KIP+K+IALA  L L+G+ L+ +   +L+G+++ G   +A  +L +G L FLPGFY  RIAYYA +G
Subjt:  VRYSSL-APDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG

Query:  ANGYRFASIPDY
          GY +  IPD+
Subjt:  ANGYRFASIPDY

Q5R8X3 Transmembrane protein 2303.4e-1341.44Show/hide
Query:  VRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGA
        V+YS L+  D+         D +F  TP    KIP+K+IALA  L L+G+ L+ +   +L+G+++ G   +A  +L +G L FLPGFY  RIAYYA +G 
Subjt:  VRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGA

Query:  NGYRFASIPDY
         GY +  IPD+
Subjt:  NGYRFASIPDY

Q5ZLH4 Transmembrane protein 2302.0e-1340.18Show/hide
Query:  VRYSSLA-PDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
        V+YS LA  DD  +D +  +  P          KIP+K+IALA+ L ++G+ L+ +   +L G+++ G   +A  +L +G L FLPGFY  RIAYYA +G
Subjt:  VRYSSLA-PDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG

Query:  ANGYRFASIPDY
          GY +  IPD+
Subjt:  ANGYRFASIPDY

Q8CIB6 Transmembrane protein 2302.0e-1341.07Show/hide
Query:  VRYSSLA-PDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
        V+YS LA  DD  +D +  +  P          KIP+K+IALA  L L+G+ L+ +   +L+G+++ G   +A  +L +G L FLPGFY  RIAYYA +G
Subjt:  VRYSSLA-PDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG

Query:  ANGYRFASIPDY
          GY +  IPD+
Subjt:  ANGYRFASIPDY

Q96A57 Transmembrane protein 2302.0e-1341.44Show/hide
Query:  VRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGA
        V+YS L+  D+         D +F  TP    KIP+K+IALA  L L+G+ L+ +   +L+G+++ G   +A  +L +G L FLPGFY  RIAYYA +G 
Subjt:  VRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGA

Query:  NGYRFASIPDY
         GY +  IPD+
Subjt:  NGYRFASIPDY

Arabidopsis top hitse value%identityAlignment
AT2G19350.1 Eukaryotic protein of unknown function (DUF872)1.9e-1143.24Show/hide
Query:  PWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIP
        P K I+LA+ LL+ G+L + L +F+    + G++      + LG L F+PGFY TRIAYYA++G  G+ F++IP
Subjt:  PWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIP

AT3G29170.1 Eukaryotic protein of unknown function (DUF872)7.5e-4065.29Show/hide
Query:  MASRRNVRYSSLAPDDNDLD-----SEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYET
        MASRR+VRY+ L  D++D        E   +DPRF Y+PKAFD++PWKSIALA+FLL LG LLL LS+F+  GHM G+ SQ Y LL LG LTFLPGFYET
Subjt:  MASRRNVRYSSLAPDDNDLD-----SEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYET

Query:  RIAYYAWRGANGYRFASIPDY
        RIAYY+WRGA GYRFA+IP Y
Subjt:  RIAYYAWRGANGYRFASIPDY

AT4G29850.1 Eukaryotic protein of unknown function (DUF872)3.3e-1143.24Show/hide
Query:  PWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIP
        P K IALA+ LL+ G+L +   +F+    + G++      + LG L F+PGFY TRIAYYA++G  G+ F++IP
Subjt:  PWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCTAGACGGAATGTTCGTTACAGCTCCCTTGCCCCTGATGATAACGATCTCGATTCAGAGGGAAGTCGATATGACCCTCGCTTTTACTATACCCCAAAAGCTTT
TGACAAGATCCCGTGGAAATCCATCGCTCTTGCTCTCTTCCTTTTACTTCTTGGATCATTGCTTCTCTTTCTTTCGTACTTCGTATTAACTGGTCACATGGCAGGAGAGA
AATCACAAGCTTATGGCCTTTTAGCATTGGGGTTTCTTACCTTCCTCCCAGGCTTTTATGAGACTAGGATTGCATATTATGCATGGAGAGGGGCCAATGGATATCGCTTT
GCATCCATTCCCGATTACTAA
mRNA sequenceShow/hide mRNA sequence
CTAAAAGCCGTCGGCCCAACTCGAAATCGAAGATCCTGAACCCAGTCAAACATTTTGATTTTATTTCTTTGAGCACCTCCTTTCATCTCTGTTGAATCAAAGAAACGACG
ACTTTTTCCTCGACCTCCAGGCTCCGGTGAGATTTCAAGACTCTTCAACTTCACCAGTTTTCTGAGATTTCACTATCGATTCTGCATCGCCTTCTTCCTCCGCTGTTATT
TTGTGCGTTTTGCGTTTTCTATTCCAGACCATATCCGCCGCCCTCTTCCTCTCCAGCGTTCCCTCCCTCTCTCATTAGTGAACGGCGGCCCATTTTAAACACACACGAAC
ATATCTGAGATCCATGCCCACGCCCGCTGACGCACGAACGTTCGCCTCTCTACGAGTGGCTTGATTTACTTGAAATTTGAAGACTGCATTCTTGATATTCGCTGTCATGG
CATCTAGACGGAATGTTCGTTACAGCTCCCTTGCCCCTGATGATAACGATCTCGATTCAGAGGGAAGTCGATATGACCCTCGCTTTTACTATACCCCAAAAGCTTTTGAC
AAGATCCCGTGGAAATCCATCGCTCTTGCTCTCTTCCTTTTACTTCTTGGATCATTGCTTCTCTTTCTTTCGTACTTCGTATTAACTGGTCACATGGCAGGAGAGAAATC
ACAAGCTTATGGCCTTTTAGCATTGGGGTTTCTTACCTTCCTCCCAGGCTTTTATGAGACTAGGATTGCATATTATGCATGGAGAGGGGCCAATGGATATCGCTTTGCAT
CCATTCCCGATTACTAAGGTGTTCCTATCTTGATGGTGTATGCTTGTCCCATCTCTCTCTCAATGTAAAACTATCATATAAAGTCAGAAAAATGGTTTGTACAGAACCAC
GTCTCTTAAGTTTGTAACGTATTTGTCGTTTTTCCTCATTCTCATAGGTTGTTTAGGATTAGAAAAATGATAAATGTTGTAGCTTTAATTCATTAACTTGACAAGTCTTG
TAGTTAAACTCAAAACCTTTATGCCAATGCAAATACTTCGAGTGAGATTATTCCAACGACTAACTACGTGGAGCAAGGTTTGCGTAGAATTTGAAGTTTGTCTGGATTAC
ATTATGTAGAAGAGAACATTTGTTTCGTAACAAGAGACTAGGTGAATCTTTAGTTGCAGTTGCTGATGCTGATGCTTTTGTGAATGCACATCCGCGACCTCCTTCCCAAT
TGATTACAGGCCAAC
Protein sequenceShow/hide protein sequence
MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRF
ASIPDY