; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G014920 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G014920
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription factor protein
Genome locationchr02:20732757..20734317
RNA-Seq ExpressionLsi02G014920
SyntenyLsi02G014920
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151201.2 transcription factor PRE6 [Cucumis sativus]2.0e-3798.9Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

XP_022134204.1 transcription factor PRE6 [Momordica charantia]6.3e-3696.7Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MSSRRSRQS  SRISDDQIIELVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

XP_022939473.1 transcription factor PRE6-like [Cucurbita moschata]9.1e-3592.31Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

XP_023548992.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]9.1e-3593.41Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MS+RRSRQ  ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

XP_038890645.1 LOW QUALITY PROTEIN: transcription factor PRE6 [Benincasa hispida]2.0e-3798.9Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MSSRRSRQSSASRI+DDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

TrEMBL top hitse value%identityAlignment
A0A0A0KXB9 Transcription regulator9.5e-3898.9Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

A0A1S3CB29 transcription factor PRE69.5e-3898.9Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

A0A5A7T970 Transcription factor PRE69.5e-3898.9Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

A0A6J1BY51 transcription factor PRE63.1e-3696.7Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MSSRRSRQS  SRISDDQIIELVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

A0A6J1FLR3 transcription factor PRE6-like4.4e-3592.31Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI65.2e-2569.57Show/hide
Query:  MSSR--RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        MSSR  RSRQS +SRI+D+QI +LVSKL+ L+PE R R  D+V +S+VLQETCNYIR+LH+EVDDLSERLS+LL+T D  SA+AAIIRSL+M
Subjt:  MSSR--RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

Q8GW32 Transcription factor PRE63.5e-2977.17Show/hide
Query:  MSSR---RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI
        MSSR   RSRQS +SRISDDQI +LVSKL+ L+PE+R RR DKVSASKVLQETCNYIRNLHREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Subjt:  MSSR---RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI

Q9FLE9 Transcription factor PRE18.6e-2876.09Show/hide
Query:  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        MS+RRSRQ SSA RISD+Q+I+LVSKLRQ++PEI + RR DK SASKVLQETCNYIRNL+REVD+LSERLSQLL ++D DS EAA+IRSL+M
Subjt:  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

Q9LJX1 Transcription factor PRE51.7e-2877.17Show/hide
Query:  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        MS+RRSRQ S+ASRISDDQ+I+LVSKLRQ +PEI   RR DKVSASKVLQETCNYIR LHREVD+LS+RLSQLL ++D DS EAA+IRSL+M
Subjt:  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

Q9LXG5 Transcription factor PRE21.8e-2573.33Show/hide
Query:  SSRRSRQ-SSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI
        SSRRSRQ SS+SRISDDQI +L+SKLRQ +PEIR +RR + VSASKVLQETCNYIRNL++E DDLS+RL+QLL +ID +S +AA+IRSLI
Subjt:  SSRRSRQ-SSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.5e-3077.17Show/hide
Query:  MSSR---RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI
        MSSR   RSRQS +SRISDDQI +LVSKL+ L+PE+R RR DKVSASKVLQETCNYIRNLHREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Subjt:  MSSR---RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 12.7e-2466.32Show/hide
Query:  MSSRRSR---QSSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MS RRSR    S  SRIS+DQI +L+ KL+QL+PE+R  RR DKVSA++VLQ+TCNYIRNLHREVDDLSERLS+LL+  ++D+A+AA+IRSL+ Q
Subjt:  MSSRRSR---QSSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.2e-2977.17Show/hide
Query:  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        MS+RRSRQ S+ASRISDDQ+I+LVSKLRQ +PEI   RR DKVSASKVLQETCNYIR LHREVD+LS+RLSQLL ++D DS EAA+IRSL+M
Subjt:  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

AT5G15160.1 BANQUO 21.3e-2673.33Show/hide
Query:  SSRRSRQ-SSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI
        SSRRSRQ SS+SRISDDQI +L+SKLRQ +PEIR +RR + VSASKVLQETCNYIRNL++E DDLS+RL+QLL +ID +S +AA+IRSLI
Subjt:  SSRRSRQ-SSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein6.1e-2976.09Show/hide
Query:  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        MS+RRSRQ SSA RISD+Q+I+LVSKLRQ++PEI + RR DK SASKVLQETCNYIRNL+REVD+LSERLSQLL ++D DS EAA+IRSL+M
Subjt:  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAGCAGAAGATCAAGGCAGTCAAGCGCTTCTAGAATCAGCGATGACCAAATCATTGAACTCGTTTCCAAGCTTCGCCAACTCGTCCCCGAGATTCGCCATCGCCG
CCCCGATAAGGTATCAGCTTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTGCACAGAGAAGTTGATGATCTAAGTGAAAGACTCTCTCAACTCTTGTCTA
CTATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAA
mRNA sequenceShow/hide mRNA sequence
CAAACTCTCCCCCAACTCCCACTCCTTTCTCCAAAGCACTTGTCTTTTTCACATCCAACATTTCTCATCTCTCTCTCTTTCTCTCTCTTCTTCAACCCAATTTTTCCTTT
GTGGTCCTTCTTCTTTATAACTCTCTTATCACTTCCCTCATTCCTTCCTTCAAACCTAACTAGTTTTTCCTAACTGAAACCTTCCTCTTTTCTTCTTCTTCTCTCTCTCC
ACTTTCCCTAAGCACTTTCCCTGTTCATCCTTCCAAGTTTTGGTTCATTTTTGCTGTTTCAAAAACAAAAACAACATAAATTAACTAAACATCACTTAACAACATGTCTA
GCAGAAGATCAAGGCAGTCAAGCGCTTCTAGAATCAGCGATGACCAAATCATTGAACTCGTTTCCAAGCTTCGCCAACTCGTCCCCGAGATTCGCCATCGCCGCCCCGAT
AAGGTATCAGCTTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTGCACAGAGAAGTTGATGATCTAAGTGAAAGACTCTCTCAACTCTTGTCTACTATAGA
TGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAAGGTTATGAAGAACCAGAACAAGGCTGTTGGGTTTAGTAATCATATATATTTTAATATAATA
TTTATATATAAGATATGATGTTACTATGTTATTTATATGGTTCTTTTTATATATATATATATATTTCCTTTTCTAGGTTTTTGGTCATTTAGATCAAAAAAGGGTGTATT
TTTCCATGAGAAGAGAAACGTCCCTTTATTATTATATATATAGGGATGTAACTAAAATGTATAATAGAAGGACTTACATTAGTAAAGCCTTCTTTTTTTTTATATATATA
AAGTTATATAAATACACCCCAAAAAAATGTAATGTACCATCTTCTCGCTTTTATTTGAGAGAAATGAATATCTA
Protein sequenceShow/hide protein sequence
MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ