CuGenDBv2

Gene ID	Lsi02G016200
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	SnoaL-like domain-containing protein
Genome location	chr02:22059462..22062507
RNA-Seq Expression	Lsi02G016200
Synteny	Lsi02G016200
Gene Ontology terms	NA
InterPro domains	IPR032710 - NTF2-like domain superfamily IPR037401 - SnoaL-like domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037630.1 putative protein transporter [Cucumis melo var. makuwa]

2.9e-95

89.9

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Query:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC
        MNSI++S +P  PIFNHKKS PP  IS+SFTSP IPR   YSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVR+FY G+NRHDLASVE LIAENC
Subjt:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC

Query:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMAL
        VYEDL+FSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRL DVDGKKQIIYARDSVEPAFKPGEMAL
Subjt:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMAL

XP_004142769.1 uncharacterized protein LOC101216887 isoform X1 [Cucumis sativus]

1.3e-106

90.37

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Query:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC
        MNSI++S +P  PIFNHKKS  P  IS+SFTSP IP+  PYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSAS+VVRDFY G+NRHDLASVE LIAENC
Subjt:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC

Query:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMALTA
        VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRL DVDGKKQIIYARDSVEPAFKPGEMALTA
Subjt:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMALTA

Query:  IRGVTWLLEKFPQLADRI
        IRGVTWLLE+FPQLADRI
Subjt:  IRGVTWLLEKFPQLADRI

XP_008458855.1 PREDICTED: uncharacterized protein LOC103498136 isoform X1 [Cucumis melo]

4.3e-107

90.37

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Query:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC
        MNSI++S +P  PIFNHKKS PP  IS+SFTSP IPR   YSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVR+FY G+NRHDLASVE LIAENC
Subjt:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC

Query:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMALTA
        VYEDL+FSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRL DVDGKKQIIYARDSVEPAFKPGEMALTA
Subjt:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMALTA

Query:  IRGVTWLLEKFPQLADRI
        IRGVTWLLE+FPQLADRI
Subjt:  IRGVTWLLEKFPQLADRI

XP_008458857.1 PREDICTED: uncharacterized protein LOC103498136 isoform X2 [Cucumis melo]

2.9e-95

89.9

Show/hide

Query:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC
        MNSI++S +P  PIFNHKKS PP  IS+SFTSP IPR   YSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVR+FY G+NRHDLASVE LIAENC
Subjt:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC

Query:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMAL
        VYEDL+FSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRL DVDGKKQIIYARDSVEPAFKPGEMAL
Subjt:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMAL

XP_038889553.1 uncharacterized protein LOC120079446 isoform X1 [Benincasa hispida]

1.3e-106

89.91

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Query:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC
        MNSI++S +P  PIFNHKKSS P+LIS+SFTSPPIPRS  YSPLRVSSSSSDNPA+TVPSPP +A LDTL+SASHVVRDFYHGINRHDLASVE LIAENC
Subjt:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC

Query:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMALTA
        VYEDLIFSRPFVGRK+ILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDV GKKQIIYARDSVEPAFKPGE+ALTA
Subjt:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMALTA

Query:  IRGVTWLLEKFPQLADRI
        IRGVTWLLE+FPQLADR+
Subjt:  IRGVTWLLEKFPQLADRI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQZ4 SnoaL-like domain-containing protein

6.1e-107

90.37

Show/hide

Query:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC
        MNSI++S +P  PIFNHKKS  P  IS+SFTSP IP+  PYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSAS+VVRDFY G+NRHDLASVE LIAENC
Subjt:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC

Query:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMALTA
        VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRL DVDGKKQIIYARDSVEPAFKPGEMALTA
Subjt:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMALTA

Query:  IRGVTWLLEKFPQLADRI
        IRGVTWLLE+FPQLADRI
Subjt:  IRGVTWLLEKFPQLADRI

A0A1S3C8U3 uncharacterized protein LOC103498136 isoform X1

2.1e-107

90.37

Show/hide

Query:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC
        MNSI++S +P  PIFNHKKS PP  IS+SFTSP IPR   YSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVR+FY G+NRHDLASVE LIAENC
Subjt:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC

Query:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMALTA
        VYEDL+FSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRL DVDGKKQIIYARDSVEPAFKPGEMALTA
Subjt:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMALTA

Query:  IRGVTWLLEKFPQLADRI
        IRGVTWLLE+FPQLADRI
Subjt:  IRGVTWLLEKFPQLADRI

A0A1S3C9E5 uncharacterized protein LOC103498136 isoform X2

1.4e-95

89.9

Show/hide

Query:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC
        MNSI++S +P  PIFNHKKS PP  IS+SFTSP IPR   YSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVR+FY G+NRHDLASVE LIAENC
Subjt:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC

Query:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMAL
        VYEDL+FSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRL DVDGKKQIIYARDSVEPAFKPGEMAL
Subjt:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMAL

A0A5A7T2M8 SnoaL-like domain-containing protein

1.4e-95

89.9

Show/hide

Query:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC
        MNSI++S +P  PIFNHKKS PP  IS+SFTSP IPR   YSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVR+FY G+NRHDLASVE LIAENC
Subjt:  MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENC

Query:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMAL
        VYEDL+FSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRL DVDGKKQIIYARDSVEPAFKPGEMAL
Subjt:  VYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMAL

A0A6J1BWM3 uncharacterized protein LOC111006367 isoform X1

3.8e-85

76.26

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Query:  MNSIVASPAPFSPIF-NHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAEN
        MNS+++ P+  + IF N K S+PP      FT+  IP   PYS LR+ SSSSDNP V V SP T+APLD LRSAS VVRDFY GINR DL SV  LIA+N
Subjt:  MNSIVASPAPFSPIF-NHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAEN

Query:  CVYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMALT
        CVYEDLIFSRPFVGR+DILLFFKKFNDSISKDLQFVIDDISTEDSSA+GVLWHLEWKGKEFPFSKGCSFYRLV  DG +QIIY RDSVEPA KPGEMALT
Subjt:  CVYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMALT

Query:  AIRGVTWLLEKFPQLADRI
        AI+GVTWLLE+FPQLADR+
Subjt:  AIRGVTWLLEKFPQLADRI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G71480.1 Nuclear transport factor 2 (NTF2) family protein

5.5e-60

64.48

Show/hide

Query:  PRSIPYS-PLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENCVYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQF
        P S+ +S P R+S+S    PA    +     P     SAS VV  FY  +N HDL+SV  LIA++CVYEDL+FS PFVGRK IL FF KF +S S DLQF
Subjt:  PRSIPYS-PLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENCVYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQF

Query:  VIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMALTAIRGVTWLLEKFPQLADR
        VIDDISTEDSSA+GV WHLEWKGK FPFSKGCSFYRL  +DGK+QI+Y RD VEPA KPGE  L AI+GVTWLL+KFPQLAD+
Subjt:  VIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMALTAIRGVTWLLEKFPQLADR

AT5G41470.1 Nuclear transport factor 2 (NTF2) family protein

2.3e-26

33.1

Show/hide

Query:  SASHVVRDFYHGINRHDLASVEALIAENCVYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRL
        S    V  FY  IN  +   + + I+ +C  +D  F +PF G+++ + FF++   S+ ++++F ++++   D  +  V WHLEWKG++ PF++GCSFY  
Subjt:  SASHVVRDFYHGINRHDLASVEALIAENCVYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRL

Query:  VDVDGKKQIIYARDSVEPAFKPGEMALTAIRGVTWLLEKFPQLAD
        +D  G+  I  AR  +E   KPG + L+ ++ +T+L ++FP+ A+
Subjt:  VDVDGKKQIIYARDSVEPAFKPGEMALTAIRGVTWLLEKFPQLAD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAACTCCATCGTAGCATCTCCAGCCCCATTCTCTCCCATTTTCAACCACAAAAAGTCTTCTCCTCCACTTTTAATTTCCTATTCTTTCACTTCTCCTCCGATTCCCAG
AAGCATACCCTATTCCCCTCTTCGCGTCTCATCTTCTTCTTCAGACAACCCGGCCGTCACCGTTCCATCTCCACCCACCGATGCTCCTCTTGACACCCTCCGATCCGCTT
CTCATGTCGTAAGGGACTTTTACCATGGAATCAACCGCCATGACCTCGCCTCCGTTGAAGCCCTCATTGCTGAGAATTGCGTTTACGAGGACCTTATCTTTTCTCGCCCT
TTCGTCGGTCGCAAGGACATTCTTCTTTTCTTCAAAAAGTTTAACGATTCGATCAGTAAAGATCTTCAGTTTGTTATTGACGATATATCCACCGAAGACTCGTCCGCTCT
GGGTGTACTTTGGCATTTAGAATGGAAAGGGAAAGAGTTTCCTTTTAGTAAGGGATGCAGCTTTTATCGCTTGGTTGATGTTGATGGCAAGAAACAAATAATCTATGCAA
GAGACAGCGTTGAGCCTGCATTCAAGCCTGGGGAGATGGCTTTGACGGCCATTAGAGGTGTAACTTGGCTTCTGGAAAAATTTCCTCAGCTAGCAGATCGGATATAA

mRNA sequence

Show/hide mRNA sequence

ATAAAATAAAATAAAAATCGGCCGATTTTACTATTTTTGTGGAGCGAAACCGAAATCGACCAGTGGTTGCAGTTCAGGTGAAGAGACTGCGCCAACGATGAACTCCATCG
TAGCATCTCCAGCCCCATTCTCTCCCATTTTCAACCACAAAAAGTCTTCTCCTCCACTTTTAATTTCCTATTCTTTCACTTCTCCTCCGATTCCCAGAAGCATACCCTAT
TCCCCTCTTCGCGTCTCATCTTCTTCTTCAGACAACCCGGCCGTCACCGTTCCATCTCCACCCACCGATGCTCCTCTTGACACCCTCCGATCCGCTTCTCATGTCGTAAG
GGACTTTTACCATGGAATCAACCGCCATGACCTCGCCTCCGTTGAAGCCCTCATTGCTGAGAATTGCGTTTACGAGGACCTTATCTTTTCTCGCCCTTTCGTCGGTCGCA
AGGACATTCTTCTTTTCTTCAAAAAGTTTAACGATTCGATCAGTAAAGATCTTCAGTTTGTTATTGACGATATATCCACCGAAGACTCGTCCGCTCTGGGTGTACTTTGG
CATTTAGAATGGAAAGGGAAAGAGTTTCCTTTTAGTAAGGGATGCAGCTTTTATCGCTTGGTTGATGTTGATGGCAAGAAACAAATAATCTATGCAAGAGACAGCGTTGA
GCCTGCATTCAAGCCTGGGGAGATGGCTTTGACGGCCATTAGAGGTGTAACTTGGCTTCTGGAAAAATTTCCTCAGCTAGCAGATCGGATATAATCCCACTTTCTCTCTC
ACACACACTACCAAGAATTTATTAATGTATTAGATTCGATATTCTTTAGTATAAATGTATATTTAGCAATAGCAACAGGTCAAATTGTATAAATTCTTACAAGTTACAAG
ATCCAAAAAGAGTGATGTTCTTGATTGCTGTATGTGTTTGTTTAAAAGAAATAATATGATGTCAAGCTTGCAAAGGGTGTGAAATACGGGATTTTTCTCTTTTGTAATTT
CATATCGTTTCTTATCCAATAATAAAATACAGGATACTAAGAGAGTGGCTGATTATAGC

Protein sequence

Show/hide protein sequence

MNSIVASPAPFSPIFNHKKSSPPLLISYSFTSPPIPRSIPYSPLRVSSSSSDNPAVTVPSPPTDAPLDTLRSASHVVRDFYHGINRHDLASVEALIAENCVYEDLIFSRP
FVGRKDILLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLVDVDGKKQIIYARDSVEPAFKPGEMALTAIRGVTWLLEKFPQLADRI

Lsi02G016200 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome