CuGenDBv2

Gene ID	Lsi02G016240
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	ribosomal RNA large subunit methyltransferase E
Genome location	chr02:22138780..22140694
RNA-Seq Expression	Lsi02G016240
Synteny	Lsi02G016240
Gene Ontology terms	GO:0031167 - rRNA methylation (biological process) GO:0008650 - rRNA (uridine-2'-O-)-methyltransferase activity (molecular function)
InterPro domains	IPR002877 - Ribosomal RNA methyltransferase FtsJ domain IPR015507 - Ribosomal RNA large subunit methyltransferase E IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6602386.1 hypothetical protein SDJN03_07619, partial [Cucurbita argyrosperma subsp. sororia]

3.4e-110

89.5

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Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFKLLQIQ QFKLITSGSSVLDLGCAPGAWLQVACQSLGP KNGGSV+    +KVKVPHVHCDSRVQTVCADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVG-DVIHGKDK-DNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQE
        KNKL +LSPKEKGFSVILSDMCP+VSGITTRDA+LSVELGMQAVNLALGE AL  G DV+HGK+K DNVDDS SVSD DG+L+ GGHLVIKLLESEDTQE
Subjt:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVG-DVIHGKDK-DNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQE

Query:  FSRMLKPLFRKASWLRPKATRSSSREIYLICQSLQART
        FSRMLKPLFRKASWLRPKATRSSSREIYLICQSLQA+T
Subjt:  FSRMLKPLFRKASWLRPKATRSSSREIYLICQSLQART

XP_004142767.1 uncharacterized protein LOC101216412 isoform X2 [Cucumis sativus]

1.0e-114

92.02

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Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGP +NGGSVL    +KVKVPH+HCDSRVQTV ADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFS
        K+KL SLSPKEKGFSVILSDMCPLVSGITTRDA LSVELGMQAVNLALGE ALGVGDVIHGKDKD+VDDSTS SDCDGVLR GGHLV+KLLESEDTQEFS
Subjt:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFS

Query:  RMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART
        RMLKPLFRKASWLRPKATRSSSREIYLICQS  LQART
Subjt:  RMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART

XP_008458861.1 PREDICTED: ribosomal RNA large subunit methyltransferase E isoform X1 [Cucumis melo]

4.0e-111

83.14

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Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGP +NGGSVL    +KVKVPHVHCDSRVQTVCADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQ---
        K+KL SLSPKEKGFSVILSDMCP+VSGITTRDA LSVELGMQAVNLALGE ALGVG+VIHGKDKD++DDSTS SDCDGVLR GGHLV+KLLESEDTQ   
Subjt:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQ---

Query:  --------------------EFSRMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART
                            EFSRMLKPLFRK+SWLRPKATRSSSREIYLICQS  LQART
Subjt:  --------------------EFSRMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART

XP_008458862.1 PREDICTED: ribosomal RNA large subunit methyltransferase E isoform X3 [Cucumis melo]

4.6e-115

91.18

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Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGP +NGGSVL    +KVKVPHVHCDSRVQTVCADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFS
        K+KL SLSPKEKGFSVILSDMCP+VSGITTRDA LSVELGMQAVNLALGE ALGVG+VIHGKDKD++DDSTS SDCDGVLR GGHLV+KLLESEDTQEFS
Subjt:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFS

Query:  RMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART
        RMLKPLFRK+SWLRPKATRSSSREIYLICQS  LQART
Subjt:  RMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART

XP_038889598.1 ribosomal RNA large subunit methyltransferase E isoform X1 [Benincasa hispida]

1.1e-116

93.64

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Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGP +NGGSVL    +KVKVPHVHCDSRVQTVCADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFS
        KNKL SLSPKEKGFSVILSDMCPLVSGITTRDA LSVELGMQAVNLALGE ALGVGDVIHGKD DNVDDSTSVSDCDGVLR GGHLVIKLLESEDTQEFS
Subjt:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFS

Query:  RMLKPLFRKASWLRPKATRSSSREIYLICQSLQART
        RMLKPLFRK+S LRPKATRSSSREIYLICQSL+ART
Subjt:  RMLKPLFRKASWLRPKATRSSSREIYLICQSLQART

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQZ0 FtsJ domain-containing protein

5.0e-115

92.02

Show/hide

Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGP +NGGSVL    +KVKVPH+HCDSRVQTV ADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFS
        K+KL SLSPKEKGFSVILSDMCPLVSGITTRDA LSVELGMQAVNLALGE ALGVGDVIHGKDKD+VDDSTS SDCDGVLR GGHLV+KLLESEDTQEFS
Subjt:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFS

Query:  RMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART
        RMLKPLFRKASWLRPKATRSSSREIYLICQS  LQART
Subjt:  RMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART

A0A1S3C8U8 ribosomal RNA large subunit methyltransferase E isoform X1

2.0e-111

83.14

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Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGP +NGGSVL    +KVKVPHVHCDSRVQTVCADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQ---
        K+KL SLSPKEKGFSVILSDMCP+VSGITTRDA LSVELGMQAVNLALGE ALGVG+VIHGKDKD++DDSTS SDCDGVLR GGHLV+KLLESEDTQ   
Subjt:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQ---

Query:  --------------------EFSRMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART
                            EFSRMLKPLFRK+SWLRPKATRSSSREIYLICQS  LQART
Subjt:  --------------------EFSRMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART

A0A1S3C9F1 ribosomal RNA large subunit methyltransferase E isoform X3

2.2e-115

91.18

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Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGP +NGGSVL    +KVKVPHVHCDSRVQTVCADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFS
        K+KL SLSPKEKGFSVILSDMCP+VSGITTRDA LSVELGMQAVNLALGE ALGVG+VIHGKDKD++DDSTS SDCDGVLR GGHLV+KLLESEDTQEFS
Subjt:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFS

Query:  RMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART
        RMLKPLFRK+SWLRPKATRSSSREIYLICQS  LQART
Subjt:  RMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART

A0A1S4E250 ribosomal RNA large subunit methyltransferase E isoform X2

2.0e-108

81.99

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Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFK   IQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGP +NGGSVL    +KVKVPHVHCDSRVQTVCADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQ---
        K+KL SLSPKEKGFSVILSDMCP+VSGITTRDA LSVELGMQAVNLALGE ALGVG+VIHGKDKD++DDSTS SDCDGVLR GGHLV+KLLESEDTQ   
Subjt:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQ---

Query:  --------------------EFSRMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART
                            EFSRMLKPLFRK+SWLRPKATRSSSREIYLICQS  LQART
Subjt:  --------------------EFSRMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART

A0A6J1H9J8 uncharacterized protein LOC111461336

2.2e-110

89.92

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Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAGAPDFFYREAQRLGYVARSAFKLLQIQ QFKLITSGSSVLDLGCAPGAWLQVACQSLGP KNGGSV+    +KVKVPHVHCDSRVQTVCADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVG-DVIHGKDK-DNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQE
        KNKL +LSPKEKGFSVILSDMCPLVSGITTRDA+LSVELGMQAVNLALGE AL  G DV+HGK+K DNVDDS  VSD DGVL+ GGHLVIKLLESEDTQE
Subjt:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVG-DVIHGKDK-DNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQE

Query:  FSRMLKPLFRKASWLRPKATRSSSREIYLICQSLQART
        FSRMLKPLFRKASWLRPKATRSSSREIYLICQSLQA+T
Subjt:  FSRMLKPLFRKASWLRPKATRSSSREIYLICQSLQART

SwissProt top hits

e value

%identity

Alignment

A8ZT18 Ribosomal RNA large subunit methyltransferase E

1.2e-20

30.36

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Query:  GAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNKLM
        G   PD + R+A+   Y ARS +KL +IQ +  ++  G++VLDLGC PG+W+  A +++G    GG V    +K    H  ++  ++  D+  + +  L 
Subjt:  GAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNKLM

Query:  -SLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFSRMLK
         +L P      V+LSDM P   G    DA  S  L   A++LAL                              +L+ GGH V K+ + ED Q F  M+K
Subjt:  -SLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFSRMLK

Query:  PLFRKASWLRPKATRSSSREIYLI
          F +    +P+  R  S+E Y+I
Subjt:  PLFRKASWLRPKATRSSSREIYLI

B8FL12 Ribosomal RNA large subunit methyltransferase E

9.9e-20

31.19

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Query:  DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPK
        D +  +AQ+ G+ ARS FKL ++Q ++K++  G  VLDLGCAPG+WL+ A Q +G   + G V+   +K          Q +  D   L +  L  +   
Subjt:  DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPK

Query:  EKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFSRMLKPLFRKA
         + F V+LSDM P  +GI   DA  S  L   A+  A+                              VL+ GG  V K+ + E    F + +K  F K 
Subjt:  EKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFSRMLKPLFRKA

Query:  SWLRPKATRSSSREIYLI
           +P++TR  SREIY++
Subjt:  SWLRPKATRSSSREIYLI

B9KIP4 Ribosomal RNA large subunit methyltransferase E

4.9e-19

32.55

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Query:  AQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSV
        A++ GY +RSA+KL+ I  +FKL+  G  VLDLG  PG W QVA + +     GG      V +  +     V  V  DV + P  +L+  + +++ F V
Subjt:  AQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSV

Query:  ILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFSRMLKPLFRKASWLRPK
        +LSDM P   G    D    + L   A++LA+                               LR GG  V K+L+ E  QEF R L+  F   ++ +PK
Subjt:  ILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFSRMLKPLFRKASWLRPK

Query:  ATRSSSREIYLI
        ++RS S EIYL+
Subjt:  ATRSSSREIYLI

B9LSX2 Ribosomal RNA large subunit methyltransferase E

9.9e-20

29.73

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Query:  DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPK
        D +Y ++++ GY ARSA+KL QI  +  L   G +V+DLG APG WLQVA + +G     G+V+   ++      D  V+T+  D+        +  +  
Subjt:  DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPK

Query:  EKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFSRMLKPLFRKA
        E+G  V++SDM P ++G    D   SV L  QA ++A                             + +L  GG  V+K+ + ED   F   ++  F   
Subjt:  EKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFSRMLKPLFRKA

Query:  SWLRPKATRSSSREIYLICQSL
          + P A+R SS E+YL+ + L
Subjt:  SWLRPKATRSSSREIYLICQSL

C3K267 Ribosomal RNA large subunit methyltransferase E

3.8e-19

30.4

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Query:  DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLG--PRKNGGSVLEQK--VKVPHVHCDSRVQTVCADVMNLPKNKLMS
        D + ++AQ+ GY +R+++KLL+IQ++ KLI  G SV+DLG APG W QV  + +G   R     +LE      V  VH D    TV A ++    N  + 
Subjt:  DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLG--PRKNGGSVLEQK--VKVPHVHCDSRVQTVCADVMNLPKNKLMS

Query:  LSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFSRMLKPL
        L         ++SDM P +SG+   D   ++ L   A++LA                               VLR GG  ++K+ + E   E+ + ++ L
Subjt:  LSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFSRMLKPL

Query:  FRKASWLRPKATRSSSREIYLICQSLQ
        F K    +P ++R  SRE YL+C+  +
Subjt:  FRKASWLRPKATRSSSREIYLICQSLQ

Arabidopsis top hits

e value

%identity

Alignment

AT4G25730.1 FtsJ-like methyltransferase family protein

1.6e-12

28.05

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Query:  DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLP-KNKLMSLSP
        D +YR A+  G+ +R+++KLLQ+  ++ L+ S  +VLDL  APG W+QVA + +      GS++     VP +     V T+  D+     K+K+  +  
Subjt:  DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLP-KNKLMSLSP

Query:  KE--KGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFSRMLKPLF
        +     F+++L D  P V G   ++A     L + +V LA                                L   G+LV K+  S D       L  LF
Subjt:  KE--KGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFSRMLKPLF

Query:  RKASWLRPKATRSSSREIYLI
         K    +P A+RS+S E YL+
Subjt:  RKASWLRPKATRSSSREIYLI

AT5G01230.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

4.1e-13

25.44

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Query:  DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSL-------GPRKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNK
        D +YR+A+  G+ ARSAFKLLQI  +F +      V+DL  APG+W QV  + L          K+G   L   + +  +     V  V  D+ N    +
Subjt:  DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSL-------GPRKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNK

Query:  LMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFSRML
        ++          +++ D  P V+G+   D  +  +L           +  G+  V H                  +L+ GG  + K+   +DT      L
Subjt:  LMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFSRML

Query:  KPLFRKASWLRPKATRSSSREIYLICQS
        K  F   ++ +PK++R+SS E + +C++
Subjt:  KPLFRKASWLRPKATRSSSREIYLICQS

AT5G01230.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

7.6e-07

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Query:  DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQ
        D +YR+A+  G+ ARSAFKLLQI  +F +      V+DL  APG+W Q
Subjt:  DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQ

AT5G13830.1 FtsJ-like methyltransferase family protein

4.2e-82

68.24

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Query:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAG PDFFYREAQRLGYVARSAFKLLQIQ Q+KLI  GSSVLDLGCAPGAWLQVACQSLGP ++GG V+    +KVKVP   CDSRVQT+ ADV+N P
Subjt:  MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFS
        + K+  LSP++ GFSVILSDMC  VSGITTRDA LS ELGM+A++LA+G+ A+            N DD        GVLR GGHLVIKLLESED Q+F+
Subjt:  KNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFS

Query:  RMLKPLFRKASWLRPKATRSSSREIYLICQSLQ
        R+ KP+F KASWLRPKATR SSREIYLICQ  +
Subjt:  RMLKPLFRKASWLRPKATRSSSREIYLICQSLQ

Sequences

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CDS sequence

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ATGAGTGGAGCAGGAGCACCCGATTTCTTCTACAGAGAGGCTCAACGCCTTGGCTATGTCGCAAGATCCGCCTTCAAGTTGCTTCAGATTCAGAACCAATTCAAATTGAT
TACTTCAGGCTCCTCTGTTTTGGACCTTGGTTGTGCTCCCGGTGCCTGGCTTCAGGTAGCTTGCCAGAGTCTGGGGCCTCGGAAAAATGGAGGCTCTGTCTTGGAACAGA
AGGTAAAGGTTCCTCATGTGCACTGTGACTCAAGGGTTCAAACTGTTTGTGCTGATGTAATGAACCTTCCCAAAAACAAATTGATGTCACTATCTCCTAAGGAGAAGGGA
TTTTCTGTAATACTCTCAGACATGTGCCCCTTGGTATCTGGAATCACCACTAGAGATGCGACATTATCAGTTGAATTAGGGATGCAAGCAGTTAATTTGGCTCTTGGAGA
AGTTGCGTTAGGTGTTGGAGATGTTATACATGGAAAGGACAAGGACAATGTCGATGACTCAACTTCAGTTTCAGATTGTGATGGCGTATTAAGACTAGGAGGCCACCTCG
TTATAAAACTATTGGAGAGTGAAGATACCCAAGAATTCAGCCGTATGTTGAAACCACTCTTCAGAAAGGCATCCTGGTTGAGGCCTAAGGCTACTAGATCGTCATCAAGA
GAGATTTATCTGATATGTCAAAGCTTGCAGGCAAGAACATGA

mRNA sequence

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GAAAAAATGTATTAAGGAAAAAAAAAAAAAGAACTGAAAACCCAAGTTGAAACCCTAGAGAAGGGTTTTAGATACAAGCAGTTTTCCGGGAAGAAGAAGAATTGGGGAAG
AACGAAATGAGTGGAGCAGGAGCACCCGATTTCTTCTACAGAGAGGCTCAACGCCTTGGCTATGTCGCAAGATCCGCCTTCAAGTTGCTTCAGATTCAGAACCAATTCAA
ATTGATTACTTCAGGCTCCTCTGTTTTGGACCTTGGTTGTGCTCCCGGTGCCTGGCTTCAGGTAGCTTGCCAGAGTCTGGGGCCTCGGAAAAATGGAGGCTCTGTCTTGG
AACAGAAGGTAAAGGTTCCTCATGTGCACTGTGACTCAAGGGTTCAAACTGTTTGTGCTGATGTAATGAACCTTCCCAAAAACAAATTGATGTCACTATCTCCTAAGGAG
AAGGGATTTTCTGTAATACTCTCAGACATGTGCCCCTTGGTATCTGGAATCACCACTAGAGATGCGACATTATCAGTTGAATTAGGGATGCAAGCAGTTAATTTGGCTCT
TGGAGAAGTTGCGTTAGGTGTTGGAGATGTTATACATGGAAAGGACAAGGACAATGTCGATGACTCAACTTCAGTTTCAGATTGTGATGGCGTATTAAGACTAGGAGGCC
ACCTCGTTATAAAACTATTGGAGAGTGAAGATACCCAAGAATTCAGCCGTATGTTGAAACCACTCTTCAGAAAGGCATCCTGGTTGAGGCCTAAGGCTACTAGATCGTCA
TCAAGAGAGATTTATCTGATATGTCAAAGCTTGCAGGCAAGAACATGAGCTGACTGCAAACTGTATACAACTAGAATTTGAGATGAGAGCCAAATCCCAGAGTACTTCGA
AAACCAAATATCAAACCAAGGTGGTCAGATGGAAGCGGAGTTCCCAAACAATGTAGAGGTTTTTTCCGGAACTAGTAGTCGCAATGCGAATTACTTGAGAGATTTGTTGA
GTCACAGACTTGCGTTAGTTGTTTGCTATAAGATAAGCTATTATTTAACTTGCTCTGTTCAGAATTAAGTCAACCAAGTGGCTTTCATTGAGATTGTGTGAACCAAAAAC
AAAAAGGACACTCGTATTCATAAAATTTACATATCAAAATACAAATTGAAACTTTCCTAC

Protein sequence

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MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKG
FSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSR
EIYLICQSLQART

Lsi02G016240 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome