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Lsi02G016480 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G016480
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCASP-like protein
Genome locationchr02:22284485..22288024
RNA-Seq ExpressionLsi02G016480
SyntenyLsi02G016480
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR006702 - Casparian strip membrane protein domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022134193.1 CASP-like protein 4D1 [Momordica charantia]2.8e-3156.44Show/hide
Query:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------
        MA SKGSR+A+LILRILTF+LIFISLLIIATNSKT+ KGT  E KVEFKDVYSYRY+ A AVIGA L                                 
Subjt:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------

Query:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP
                    ID+R+N K L GN+ NSFFDKGSA+AAILL+AF+C+A+VSILSSLAL+RKP
Subjt:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP

XP_022963262.1 CASP-like protein 4D1 [Cucurbita moschata]2.8e-2854.6Show/hide
Query:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------
        MA SKGSR+A+LILRILTFILIFISL+I ATNSKTL KGT  E K+EFK+VYSYRY++A AVIG  L                                 
Subjt:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------

Query:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP
                    IDMRANLK L G + +SFFD+GS AAA+L +AFVCAA+VSILS+LALIRKP
Subjt:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP

XP_022990642.1 CASP-like protein 4D1 [Cucurbita maxima]1.8e-2753.37Show/hide
Query:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------
        M  SKGSR+A+LILRILTFILIFISLLI ATNSKTL KG   ETK +FKDVYSYRY+++  +IGA L                                 
Subjt:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------

Query:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP
                    ID+R  LK L GN+LNSF DKG+A+AA+LL+AF+CAA+VSILSSLALIRKP
Subjt:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP

XP_023525049.1 CASP-like protein 4D1 [Cucurbita pepo subsp. pepo]1.8e-2752.76Show/hide
Query:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------
        M  SKGSR+A+LILRILTFILIFISL+I ATNSKT  KG   ETK +FKDVYSYRY+++  +IGA L                                 
Subjt:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------

Query:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP
                    ID+R  LK L GN+LNSFFDKG+A+AA+LL+AF+CAA+VSILSSLALIRKP
Subjt:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP

XP_038877614.1 CASP-like protein 4D1 [Benincasa hispida]8.0e-3157.5Show/hide
Query:  SKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR-----------------------------------
        SKGSR+A+LILRILTFILIF++LLIIATNSKT+ +GT+ ETK+EFKDV SYRY+VAVAVIG  L                                    
Subjt:  SKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR-----------------------------------

Query:  ---------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP
                 IDMR N K L GN  NSFFDKGSAAAAILL+AF+CAA+VSILSSLALIRKP
Subjt:  ---------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP

TrEMBL top hitse value%identityAlignment
A0A6J1C1A4 CASP-like protein1.3e-3156.44Show/hide
Query:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------
        MA SKGSR+A+LILRILTF+LIFISLLIIATNSKT+ KGT  E KVEFKDVYSYRY+ A AVIGA L                                 
Subjt:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------

Query:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP
                    ID+R+N K L GN+ NSFFDKGSA+AAILL+AF+C+A+VSILSSLAL+RKP
Subjt:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP

A0A6J1GRM4 CASP-like protein3.4e-2752.76Show/hide
Query:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------
        M  SKGSR+A+LILRILTFILIFISL+I ATNSKT  KG   ET  +FKDVYSYRY+++  VIGA L                                 
Subjt:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------

Query:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP
                    ID+R  LK L GN+LNSFFDKG+A+AA+LL+AF+CAA+VSILSSLALIRKP
Subjt:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP

A0A6J1HET3 CASP-like protein1.4e-2854.6Show/hide
Query:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------
        MA SKGSR+A+LILRILTFILIFISL+I ATNSKTL KGT  E K+EFK+VYSYRY++A AVIG  L                                 
Subjt:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------

Query:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP
                    IDMRANLK L G + +SFFD+GS AAA+L +AFVCAA+VSILS+LALIRKP
Subjt:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP

A0A6J1JJD2 CASP-like protein8.9e-2853.37Show/hide
Query:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------
        M  SKGSR+A+LILRILTFILIFISLLI ATNSKTL KG   ETK +FKDVYSYRY+++  +IGA L                                 
Subjt:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------

Query:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP
                    ID+R  LK L GN+LNSF DKG+A+AA+LL+AF+CAA+VSILSSLALIRKP
Subjt:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP

A0A6J1JSF8 CASP-like protein1.5e-2753.37Show/hide
Query:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------
        MA SKGSR+ATLILRILT ILIFISL+I A+NSKTL KGT  E K+EFK+VYSYRY++A AVIG  L                                 
Subjt:  MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLR--------------------------------

Query:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP
                    ID RANLK L G + +SFFD+GS AAA+LL+AF+CAA+VSILS+LALIRKP
Subjt:  ------------IDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP

SwissProt top hitse value%identityAlignment
B9NBE5 CASP-like protein 4D13.4e-0834.76Show/hide
Query:  AVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGAT---LRIDMRAN------------------------
        A S  SRM  L LR+LTF  + +SL+I+ TN+ T+  G + E KV  KD YSYRY++A    G T   L+I +  N                        
Subjt:  AVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGAT---LRIDMRAN------------------------

Query:  -------------------LKV-LAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRK
                           LK  LAG   + FF+KG A+A++LL+ FVC A++S+ SS AL +K
Subjt:  -------------------LKV-LAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRK

B9SXY8 CASP-like protein 4D11.4e-0936.48Show/hide
Query:  SKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIG-ATLRIDMRANLKVLA---------GNV-----------
        S  SRMA LILRILTFI +  SL+I+ TN+ TL +  L E KV FKDVY+YRY++A  VIG A   + +   L  +A         GN+           
Subjt:  SKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIG-ATLRIDMRANLKVLA---------GNV-----------

Query:  --------------------------LNSFFDKGSAAAAILLVAFVCAAMVSILSSLAL
                                   ++F +KG A+A++LL+ FVC A++S+ SS AL
Subjt:  --------------------------LNSFFDKGSAAAAILLVAFVCAAMVSILSSLAL

D7LD59 CASP-like protein 4D24.6e-0526.71Show/hide
Query:  RMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLRI--------------------------DMRANLKVLAGN
        +++ L+LR+LT + + I+L+I++TNS T+        K  FKDVY+YRY+++ AVIG    +                          D   +  V  G+
Subjt:  RMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLRI--------------------------DMRANLKVLAGN

Query:  V------------------------LNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRK
                                 ++ FF +G A+A++LL +F+C A++S+ SSLA+ ++
Subjt:  V------------------------LNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRK

Q2R2T4 CASP-like protein 4D12.7e-0555.36Show/hide
Query:  ATLILRILTFILIFISLLIIATNSKTL-FKGTLGETKVEFKDVYSYRYVVAVAVIG
        A L LR+LT  L+  SL +IA +  TL F G L   K+ FKDVY+YRYV+A+AVIG
Subjt:  ATLILRILTFILIFISLLIIATNSKTL-FKGTLGETKVEFKDVYSYRYVVAVAVIG

Q56X75 CASP-like protein 4D23.5e-0527.33Show/hide
Query:  RMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLRI--------------------------DMRANLKVLAGN
        ++  L+LR+LT + + I+L+I++TNS T+        K  FKDVY+YRY+++ AVIG    +                          D   +  V  G+
Subjt:  RMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLRI--------------------------DMRANLKVLAGN

Query:  V------------------------LNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRK
                                 ++ FF KG A+A++LL AF+C A++S+ SS A+ ++
Subjt:  V------------------------LNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRK

Arabidopsis top hitse value%identityAlignment
AT2G39518.1 Uncharacterised protein family (UPF0497)2.5e-0627.33Show/hide
Query:  RMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLRI--------------------------DMRANLKVLAGN
        ++  L+LR+LT + + I+L+I++TNS T+        K  FKDVY+YRY+++ AVIG    +                          D   +  V  G+
Subjt:  RMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLRI--------------------------DMRANLKVLAGN

Query:  V------------------------LNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRK
                                 ++ FF KG A+A++LL AF+C A++S+ SS A+ ++
Subjt:  V------------------------LNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRK

AT2G39530.1 Uncharacterised protein family (UPF0497)2.1e-0527.78Show/hide
Query:  RMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLRI--------------------------------------
        R   L+LR+LT   + I++++I+TN+ TL + +    K+ F DVY+YRY+++ AVIG    +                                      
Subjt:  RMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLRI--------------------------------------

Query:  --------DMR----ANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP
                D++    A ++  + + ++ FF KG A+A++LL AFV  A++S+ SSLAL ++P
Subjt:  --------DMR----ANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGTCTCAAAGGGTTCAAGAATGGCTACTCTTATATTGAGAATTTTAACCTTTATTTTGATCTTTATTTCTCTCTTAATCATCGCCACCAATTCCAAAACTCTTTT
TAAAGGGACTTTAGGTGAAACAAAAGTTGAGTTCAAAGATGTTTATTCCTATCGTTATGTGGTAGCTGTGGCGGTTATAGGAGCTACTTTGAGGATCGATATGAGAGCGA
ATTTGAAAGTGCTGGCTGGCAATGTTTTGAACTCATTTTTCGACAAGGGAAGTGCTGCAGCTGCTATTCTTCTTGTTGCATTTGTTTGTGCTGCCATGGTTTCAATTCTC
TCTTCCTTGGCTCTCATCAGAAAGCCT
mRNA sequenceShow/hide mRNA sequence
GGGTAAAGATGGCAGTCTCAAAGGGTTCAAGAATGGCTACTCTTATATTGAGAATTTTAACCTTTATTTTGATCTTTATTTCTCTCTTAATCATCGCCACCAATTCCAAA
ACTCTTTTTAAAGGGACTTTAGGTGAAACAAAAGTTGAGTTCAAAGATGTTTATTCCTATCGTTATGTGGTAGCTGTGGCGGTTATAGGAGCTACTTTGAGGATCGATAT
GAGAGCGAATTTGAAAGTGCTGGCTGGCAATGTTTTGAACTCATTTTTCGACAAGGGAAGTGCTGCAGCTGCTATTCTTCTTGTTGCATTTGTTTGTGCTGCCATGGTTT
CAATTCTCTCTTCCTTGGCTCTCATCAGAAAGCCT
Protein sequenceShow/hide protein sequence
MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLRIDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSIL
SSLALIRKP