; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G016490 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G016490
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCASP-like protein
Genome locationchr02:22291665..22293299
RNA-Seq ExpressionLsi02G016490
SyntenyLsi02G016490
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR006702 - Casparian strip membrane protein domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022134193.1 CASP-like protein 4D1 [Momordica charantia]1.1e-6284.05Show/hide
Query:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL
        MAASKGSRIASLILRILTF+LIFISLLIIATNSKTV KGT +E+KVEFKDVYSYRYL A AVIGAALSLLQIAL +Y +VTKS+GTP FD+FSDKLL+YL
Subjt:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL

Query:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP
        L+S ASAGLGAGIDLR+N+K+LVGN FNSFFDKGSA+AAILLLAF C+A+VSILSSLAL+RKP
Subjt:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP

XP_022963262.1 CASP-like protein 4D1 [Cucurbita moschata]1.9e-5476.69Show/hide
Query:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL
        MAASKGSRIASLILRILTFILIFISL+I ATNSKT+ KGT +E+K+EFK+VYSYRYLIA AVIG  LSL+QI L+IY +VTKSEGTPLF LFSD LLSYL
Subjt:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL

Query:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP
        L+S++SA LGAGID+R N KEL G  F+SFFD+GS AAA+L +AF CAA+VSILS+LALIRKP
Subjt:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP

XP_022990642.1 CASP-like protein 4D1 [Cucurbita maxima]2.4e-5477.91Show/hide
Query:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL
        M  SKGSRIASLILRILTFILIFISLLI ATNSKT+ KG  +E+K +FKDVYSYRYLI+  +IGA LSLLQIAL IY++VTKS  T LFD+FSDKLLSYL
Subjt:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL

Query:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP
        L+S ASAGLGAGIDLR   KELVGN  NSF DKG+A+AA+LLLAF CAA+VSILSSLALIRKP
Subjt:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP

XP_023525049.1 CASP-like protein 4D1 [Cucurbita pepo subsp. pepo]1.9e-5477.91Show/hide
Query:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL
        M  SKGSRIASLILRILTFILIFISL+I ATNSKT  KG  +E+K +FKDVYSYRYLI+  +IGA LSLLQIAL IY++VTKS  T LFD+FSDKLLSYL
Subjt:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL

Query:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP
        L+S ASAGLGAGIDLR   KELVGN  NSFFDKG+A+AA+LLLAF CAA+VSILSSLALIRKP
Subjt:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP

XP_038877614.1 CASP-like protein 4D1 [Benincasa hispida]1.7e-6387.58Show/hide
Query:  ASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYLLI
        ASKGSRIASLILRILTFILIF++LLIIATNSKTV +GTV+E+K+EFKDV SYRYL+AVAVIG ALSLLQIA  IY LVTK +GTPLFDLFSDKLLSYLL+
Subjt:  ASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYLLI

Query:  SAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP
        S ASAGLGAGID+R NFKELVGNFFNSFFDKGSAAAAILLLAF CAAIVSILSSLALIRKP
Subjt:  SAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP

TrEMBL top hitse value%identityAlignment
A0A6J1C1A4 CASP-like protein5.3e-6384.05Show/hide
Query:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL
        MAASKGSRIASLILRILTF+LIFISLLIIATNSKTV KGT +E+KVEFKDVYSYRYL A AVIGAALSLLQIAL +Y +VTKS+GTP FD+FSDKLL+YL
Subjt:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL

Query:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP
        L+S ASAGLGAGIDLR+N+K+LVGN FNSFFDKGSA+AAILLLAF C+A+VSILSSLAL+RKP
Subjt:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP

A0A6J1GRM4 CASP-like protein2.6e-5477.91Show/hide
Query:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL
        M  SKGSRIASLILRILTFILIFISL+I ATNSKT  KG  +E+  +FKDVYSYRYLI+  VIGA LSLLQIAL IY++VTKS  T LFD+FSDKLLSYL
Subjt:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL

Query:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP
        L+S ASAGLGAGIDLR   KELVGN  NSFFDKG+A+AA+LLLAF CAA+VSILSSLALIRKP
Subjt:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP

A0A6J1HET3 CASP-like protein9.0e-5576.69Show/hide
Query:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL
        MAASKGSRIASLILRILTFILIFISL+I ATNSKT+ KGT +E+K+EFK+VYSYRYLIA AVIG  LSL+QI L+IY +VTKSEGTPLF LFSD LLSYL
Subjt:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL

Query:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP
        L+S++SA LGAGID+R N KEL G  F+SFFD+GS AAA+L +AF CAA+VSILS+LALIRKP
Subjt:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP

A0A6J1JJD2 CASP-like protein1.2e-5477.91Show/hide
Query:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL
        M  SKGSRIASLILRILTFILIFISLLI ATNSKT+ KG  +E+K +FKDVYSYRYLI+  +IGA LSLLQIAL IY++VTKS  T LFD+FSDKLLSYL
Subjt:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL

Query:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP
        L+S ASAGLGAGIDLR   KELVGN  NSF DKG+A+AA+LLLAF CAA+VSILSSLALIRKP
Subjt:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP

A0A6J1JSF8 CASP-like protein1.7e-5375.46Show/hide
Query:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL
        MAASKGSRIA+LILRILT ILIFISL+I A+NSKT+ KGT +E+K+EFK+VYSYRYLIA AVIG  LSL+QI L+IY +VTKSEGTPLF LFSD LLSYL
Subjt:  MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYL

Query:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP
        L+S++SA LGAGID R N KEL G  F+SFFD+GS AAA+LL+AF CAA+VSILS+LALIRKP
Subjt:  LISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP

SwissProt top hitse value%identityAlignment
A1XGB4 CASP-like protein PIMP11.5e-1943.95Show/hide
Query:  SLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKS----EGTPLFDLFSDKLLSYLLISAAS
        SLI+RILT I + IS ++IATN++TV      + K++FKD Y+YRYLIA  +IG A +LLQIA +I  L T +    EG  LFD + DK +SY L++ A+
Subjt:  SLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKS----EGTPLFDLFSDKLLSYLLISAAS

Query:  AGLGAGIDLRTNFKELVG-NFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRK
        A  G   DL    K+L G + ++ F +  +AAA++ L+ FF A   SI SS  L ++
Subjt:  AGLGAGIDLRTNFKELVG-NFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRK

B9NBE5 CASP-like protein 4D18.7e-2341.92Show/hide
Query:  AASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSL------VTKSEGTPLFDLFSDK
        A S  SR+ +L LR+LTF  + +SL+I+ TN+ T+  G + E KV  KD YSYRY++A    G   ++LQIAL +  +       T  +G  +FD + DK
Subjt:  AASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSL------VTKSEGTPLFDLFSDK

Query:  LLSYLLISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRK
        ++SY+L + A+A  GA  +L+T    L G   + FF+KG A+A++LLL F C AI+S+ SS AL +K
Subjt:  LLSYLLISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRK

B9SXY8 CASP-like protein 4D11.2e-2444.72Show/hide
Query:  SKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVT-----KSEGTPLFDLFSDKLLS
        S  SR+A+LILRILTFI +  SL+I+ TN+ T+    V E KV FKDVY+YRY++A  VIG A ++LQIA  +Y + T       +G   FD F DK++S
Subjt:  SKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVT-----KSEGTPLFDLFSDKLLS

Query:  YLLISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLAL
        Y+L++ A+AG  +  D++  F       F++F +KG A+A++LL+ F C A++S+ SS AL
Subjt:  YLLISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLAL

D7LD59 CASP-like protein 4D22.2e-1837.27Show/hide
Query:  RIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVT--KSEGTPLFDLFSDKLLSYLLISAA
        +++ L+LR+LT + + I+L+I++TNS T+     S  K  FKDVY+YRY+++ AVIG   +++Q+   I    T  K+      D + DKL+SYL+ + +
Subjt:  RIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVT--KSEGTPLFDLFSDKLLSYLLISAA

Query:  SAGLGAGIDLRTNFKELVG----NFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRK
        +AG G   DL+  F  LV     +  + FF +G A+A++LL +F C A++S+ SSLA+ ++
Subjt:  SAGLGAGIDLRTNFKELVG----NFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRK

Q56X75 CASP-like protein 4D21.3e-1837.89Show/hide
Query:  RIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVT--KSEGTPLFDLFSDKLLSYLLISAA
        ++  L+LR+LT + + I+L+I++TNS T+     S  K  FKDVY+YRY+++ AVIG   +++Q+   I    T  K+      D + DKL+SYL+ + +
Subjt:  RIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVT--KSEGTPLFDLFSDKLLSYLLISAA

Query:  SAGLGAGIDLRTNFKELVG----NFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRK
        +AG G   DL+  F  LV     +  + FF KG A+A++LL AF C A++S+ SS A+ ++
Subjt:  SAGLGAGIDLRTNFKELVG----NFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRK

Arabidopsis top hitse value%identityAlignment
AT2G39518.1 Uncharacterised protein family (UPF0497)9.3e-2037.89Show/hide
Query:  RIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVT--KSEGTPLFDLFSDKLLSYLLISAA
        ++  L+LR+LT + + I+L+I++TNS T+     S  K  FKDVY+YRY+++ AVIG   +++Q+   I    T  K+      D + DKL+SYL+ + +
Subjt:  RIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVT--KSEGTPLFDLFSDKLLSYLLISAA

Query:  SAGLGAGIDLRTNFKELVG----NFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRK
        +AG G   DL+  F  LV     +  + FF KG A+A++LL AF C A++S+ SS A+ ++
Subjt:  SAGLGAGIDLRTNFKELVG----NFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRK

AT2G39530.1 Uncharacterised protein family (UPF0497)1.3e-1837.65Show/hide
Query:  RIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEG--TPLFDLFSDKLLSYLLISAA
        R   L+LR+LT   + I++++I+TN+ T+   + S  K+ F DVY+YRY+++ AVIG   +++Q+ L I    T      T  FD + DK++SYLL + +
Subjt:  RIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEG--TPLFDLFSDKLLSYLLISAA

Query:  SAGLGAGIDLRTNFKELV----GNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP
        +AG G   DL+  +  L+     +  + FF KG A+A++LL AF   A++S+ SSLAL ++P
Subjt:  SAGLGAGIDLRTNFKELV----GNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCTTCAAAGGGTTCAAGAATTGCTTCTCTTATATTGAGAATTTTAACTTTCATTCTGATCTTTATTTCTCTCTTAATCATCGCCACCAATTCCAAAACTGTTTT
TAAAGGGACTGTAAGTGAATCAAAAGTCGAATTCAAAGATGTTTATTCCTATCGTTATTTGATAGCTGTGGCTGTTATAGGAGCTGCTTTGAGTCTTCTTCAAATTGCTC
TCGCCATTTATTCTCTTGTTACCAAAAGCGAGGGTACTCCACTTTTCGATTTGTTCAGCGACAAGTTGTTATCGTACCTTCTAATATCGGCTGCCTCGGCGGGATTAGGC
GCGGGAATCGACCTGAGAACGAATTTTAAAGAGCTGGTTGGCAATTTTTTCAACTCATTTTTTGACAAGGGCAGTGCTGCAGCTGCTATTCTTCTCCTTGCATTTTTTTG
CGCTGCCATTGTTTCAATTCTCTCTTCCTTGGCTCTCATAAGAAAGCCTTAA
mRNA sequenceShow/hide mRNA sequence
CAAAAGGATATGTTGGATTTGTGCTAAAATTAAACTTGGAAGAAGAAATTTTTAGAGTTAAAAGATGGCAGCTTCAAAGGGTTCAAGAATTGCTTCTCTTATATTGAGAA
TTTTAACTTTCATTCTGATCTTTATTTCTCTCTTAATCATCGCCACCAATTCCAAAACTGTTTTTAAAGGGACTGTAAGTGAATCAAAAGTCGAATTCAAAGATGTTTAT
TCCTATCGTTATTTGATAGCTGTGGCTGTTATAGGAGCTGCTTTGAGTCTTCTTCAAATTGCTCTCGCCATTTATTCTCTTGTTACCAAAAGCGAGGGTACTCCACTTTT
CGATTTGTTCAGCGACAAGTTGTTATCGTACCTTCTAATATCGGCTGCCTCGGCGGGATTAGGCGCGGGAATCGACCTGAGAACGAATTTTAAAGAGCTGGTTGGCAATT
TTTTCAACTCATTTTTTGACAAGGGCAGTGCTGCAGCTGCTATTCTTCTCCTTGCATTTTTTTGCGCTGCCATTGTTTCAATTCTCTCTTCCTTGGCTCTCATAAGAAAG
CCTTAATTAAGAATTTCTTCTTATTTCAAAACTTCTCTATGATCTTAAGCTGTTTAATTAATTGGTTTATGTTTAG
Protein sequenceShow/hide protein sequence
MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYLLISAASAGLG
AGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP