; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G016500 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G016500
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCASP-like protein
Genome locationchr02:22300777..22301533
RNA-Seq ExpressionLsi02G016500
SyntenyLsi02G016500
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR006702 - Casparian strip membrane protein domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142832.1 CASP-like protein 4D1 [Cucumis sativus]5.1e-6285.81Show/hide
Query:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT
        MENSSGSR+T LILRILTFVFLFISFFILITTSQTV+  +LHFN YH FRYMLATIIIG++FNLLQIAF+LFNIVKNG+ TILFDFFGDKFLSYLLATG 
Subjt:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT

Query:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS
        AAG G+ VDLKK+DPDDLF  FFDKAYAASTLLLFAFFC+AAVSILSSFALS RS
Subjt:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS

XP_008458890.1 PREDICTED: CASP-like protein 4D1 [Cucumis melo]1.1e-6186.45Show/hide
Query:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT
        MENSSGSRVT LILRILTFVFLFISFFILITTSQTV+  +LHFNSYH FRYMLATIIIG++FNLLQIAF+LFNIVKNG+ TILFDFFGDKFLSYLLATG 
Subjt:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT

Query:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS
        AAG G+ VDLKK DPDDLF +FFDKAYAAS LLLFAFFC+AAVSILSSFALS RS
Subjt:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS

XP_022992767.1 CASP-like protein 4D1 [Cucurbita maxima]1.7e-6082.47Show/hide
Query:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT
        MENSSG+RVTCLILRILTFVFLFISFF+L+TTSQTV+SV+ HFN++H +RY+LATIIIGI+FNLLQIAF+LFNIVK    TILFDFFGDKFLSYLLATGT
Subjt:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT

Query:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIR
        AAG GL+VDL+ +DPDD FG+FFDKAYAAS LLLFAFFC+AAVSILSSFALS R
Subjt:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIR

XP_023549516.1 CASP-like protein 4D1 [Cucurbita pepo subsp. pepo]2.8e-6081.82Show/hide
Query:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT
        MENSSG+RVTCLILRILTFVFLFISFF+L+TTSQTV+SV+ HFN++H +RY+LATIIIGI+FNLLQIAF+LFNIVK    TILFDFFGDKFLSYLLATGT
Subjt:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT

Query:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIR
        AAG GL+VDL+ +DPDD FG+FFDKAYAAS LLLFAFFC+AAVSI+SSFALS R
Subjt:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIR

XP_038877616.1 CASP-like protein 4D1 [Benincasa hispida]4.1e-6792.9Show/hide
Query:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT
        MENSSGSRVT LILRILTFVFLFISFFILITTSQTVQSV+LHFN YHAFRYMLATIIIGI+FNLLQIAF+LFNIVKNGNSTILFDFFGDKFLSYLL TGT
Subjt:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT

Query:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS
        AAG GL+VDLKKIDPDD FGSFFDKAYAASTLLLFAFFC+AAVSILSSFALS RS
Subjt:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS

TrEMBL top hitse value%identityAlignment
A0A0A0KU83 CASP-like protein2.5e-6285.81Show/hide
Query:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT
        MENSSGSR+T LILRILTFVFLFISFFILITTSQTV+  +LHFN YH FRYMLATIIIG++FNLLQIAF+LFNIVKNG+ TILFDFFGDKFLSYLLATG 
Subjt:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT

Query:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS
        AAG G+ VDLKK+DPDDLF  FFDKAYAASTLLLFAFFC+AAVSILSSFALS RS
Subjt:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS

A0A1S3C9H1 CASP-like protein5.5e-6286.45Show/hide
Query:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT
        MENSSGSRVT LILRILTFVFLFISFFILITTSQTV+  +LHFNSYH FRYMLATIIIG++FNLLQIAF+LFNIVKNG+ TILFDFFGDKFLSYLLATG 
Subjt:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT

Query:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS
        AAG G+ VDLKK DPDDLF +FFDKAYAAS LLLFAFFC+AAVSILSSFALS RS
Subjt:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS

A0A6J1C1S4 CASP-like protein9.8e-5981.94Show/hide
Query:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT
        MENSSGSRVTCLILRI+TFVFLFISFFIL+TTS+TV  V+LHFN +HA+RY+LATIIIGII NLLQIAF+LFN VKNG+ TILFDFFGDKFLSYLLATG 
Subjt:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT

Query:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS
        AAG GL VDL+  D DD +G FFDKAYAAS LLLFAFFCAAAVSILSSFALS R+
Subjt:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS

A0A6J1FGY1 CASP-like protein3.4e-5979.87Show/hide
Query:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT
        ME+SSG+RVTCLILRILTFVFLFISFF+L+TTSQTV+SV+ HFN++H +RY+LATIIIG++FNLLQIAF+L NIVK    TILFDFFGDKFLSYLLATGT
Subjt:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT

Query:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIR
        AAG GL+VDL+ +DPDD FG+FFDKAYAAS LLLFAFFC+AAVSI+SSFALS R
Subjt:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIR

A0A6J1JQU5 CASP-like protein8.0e-6182.47Show/hide
Query:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT
        MENSSG+RVTCLILRILTFVFLFISFF+L+TTSQTV+SV+ HFN++H +RY+LATIIIGI+FNLLQIAF+LFNIVK    TILFDFFGDKFLSYLLATGT
Subjt:  MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGT

Query:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIR
        AAG GL+VDL+ +DPDD FG+FFDKAYAAS LLLFAFFC+AAVSILSSFALS R
Subjt:  AAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIR

SwissProt top hitse value%identityAlignment
A1XGB4 CASP-like protein PIMP12.2e-2343.71Show/hide
Query:  LILRILTFVFLFISFFILITTSQTVQS----VQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVK----NGNSTILFDFFGDKFLSYLLATGTAAG
        LI+RILT + L ISF ++ T +QTV +    V++ F  ++A+RY++AT+IIG+ + LLQIAF++  +       G   +LFDF+GDKF+SY L TG AA 
Subjt:  LILRILTFVFLFISFFILITTSQTVQS----VQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVK----NGNSTILFDFFGDKFLSYLLATGTAAG

Query:  LGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIR
         G+  DLK+++  D +  F + + AA++L L  FF A A SI SS+ L  R
Subjt:  LGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIR

B9SXY8 CASP-like protein 4D17.3e-2746.2Show/hide
Query:  SSGSRVTCLILRILTFVFLFISFFILITTSQTVQ----SVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLF-----NIVKNGNSTILFDFFGDKFLSY
        S  SR+  LILRILTF+FL  S  IL T + T++     V++HF   +A+RYMLATI+IG+ + +LQIAFTL+     N + +G+  + FDFFGDK +SY
Subjt:  SSGSRVTCLILRILTFVFLFISFFILITTSQTVQ----SVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLF-----NIVKNGNSTILFDFFGDKFLSY

Query:  LLATGTAAGLGLAVDLKKI-DPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFAL
        +L TG AAG     D+K +      F +F +K YA+++LLL  F C A +S+ SS+AL
Subjt:  LLATGTAAGLGLAVDLKKI-DPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFAL

C6T1Z6 CASP-like protein 4D13.6e-2646.79Show/hide
Query:  NSSGSRVTCLILRILTFVFLFISFFILITTSQT--VQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVK-----NGNSTILFDFFGDKFLSYL
        +S+GSR   L+LR+LTFVFL I+  ++    QT     V++ FN  +A+RYM++TIIIG  +NLLQ+A ++F +V      +G+   LFDFFGDK +SYL
Subjt:  NSSGSRVTCLILRILTFVFLFISFFILITTSQT--VQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVK-----NGNSTILFDFFGDKFLSYL

Query:  LATGTAAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFAL
        L +G+AAG G+ V+L +  P +   SF DKA A+++LLL AF   A  S  +SFAL
Subjt:  LATGTAAGLGLAVDLKKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFAL

D7LD59 CASP-like protein 4D21.2e-2139.75Show/hide
Query:  RVTCLILRILTFVFLFISFFILITTSQTVQS----VQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILF--DFFGDKFLSYLLATGTA
        +V+ L+LR+LT VFL I+  IL T S T+ S    ++ HF   +A+RYML+  +IG+++ ++Q+ FT+        +   +  DF+GDK +SYL+ATG+A
Subjt:  RVTCLILRILTFVFLFISFFILITTSQTVQS----VQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILF--DFFGDKFLSYLLATGTA

Query:  AGLGLAVDLK-------KIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS
        AG G++ DLK        +D  D    FF + YA+++LLLF+F C A +S+ SS A++ R+
Subjt:  AGLGLAVDLK-------KIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS

Q56X75 CASP-like protein 4D24.9e-2343.83Show/hide
Query:  RVTCLILRILTFVFLFISFFILITTSQTVQS----VQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNI---VKNGNSTILFDFFGDKFLSYLLATGT
        +V  L+LR+LT VFL I+  IL T S T+ S    ++ HF   +A+RYML+  +IG+++ ++Q+ FT+      VKN  +  L DF+GDK +SYL+ATG+
Subjt:  RVTCLILRILTFVFLFISFFILITTSQTVQS----VQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNI---VKNGNSTILFDFFGDKFLSYLLATGT

Query:  AAGLGLAVDLK-------KIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS
        AAG G+  DLK        +D  D    FF K YA+++LLLFAF C A +S+ SSFA++ R+
Subjt:  AAGLGLAVDLK-------KIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS

Arabidopsis top hitse value%identityAlignment
AT2G39518.1 Uncharacterised protein family (UPF0497)3.5e-2443.83Show/hide
Query:  RVTCLILRILTFVFLFISFFILITTSQTVQS----VQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNI---VKNGNSTILFDFFGDKFLSYLLATGT
        +V  L+LR+LT VFL I+  IL T S T+ S    ++ HF   +A+RYML+  +IG+++ ++Q+ FT+      VKN  +  L DF+GDK +SYL+ATG+
Subjt:  RVTCLILRILTFVFLFISFFILITTSQTVQS----VQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNI---VKNGNSTILFDFFGDKFLSYLLATGT

Query:  AAGLGLAVDLK-------KIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS
        AAG G+  DLK        +D  D    FF K YA+++LLLFAF C A +S+ SSFA++ R+
Subjt:  AAGLGLAVDLK-------KIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS

AT2G39530.1 Uncharacterised protein family (UPF0497)1.1e-2242.5Show/hide
Query:  RVTCLILRILTFVFLFISFFILITTSQTVQ----SVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTL--FNIVKNGNSTILFDFFGDKFLSYLLATGTA
        R   L+LR+LT  FL I+  ++ T + T++    S++L FN  +A+RYML+  +IG+++ ++Q+  T+  F   K    T  FDF+GDK +SYLLATG+A
Subjt:  RVTCLILRILTFVFLFISFFILITTSQTVQ----SVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTL--FNIVKNGNSTILFDFFGDKFLSYLLATGTA

Query:  AGLGLAVDLK-------KIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIR
        AG G++ DLK       + D  D    FF K YA+++LLLFAF   A +S+ SS ALS R
Subjt:  AGLGLAVDLK-------KIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAATTCAAGTGGTTCAAGGGTGACTTGTCTTATACTAAGAATACTAACTTTTGTGTTTCTTTTCATTTCTTTCTTCATTCTTATCACCACTTCCCAAACTGTTCA
ATCAGTTCAGCTCCATTTCAATAGTTATCATGCTTTTAGGTATATGCTTGCTACTATTATCATCGGGATCATATTCAATCTTTTGCAAATCGCGTTCACACTCTTTAACA
TCGTTAAAAATGGCAACAGTACTATATTATTCGATTTCTTTGGCGACAAGTTTTTGTCATACCTTCTAGCAACAGGCACAGCAGCTGGACTTGGACTGGCAGTGGATTTG
AAAAAAATAGACCCAGATGATTTATTTGGTTCATTCTTTGATAAGGCATATGCAGCATCGACTCTTCTTTTGTTTGCATTCTTTTGTGCTGCAGCTGTCTCTATTCTCTC
TTCCTTTGCACTCTCCATCAGATCTTAA
mRNA sequenceShow/hide mRNA sequence
ATTATAAAGAGTTTTTAGGTTTTTGTTAAGGAAAGAAATAAAGAGAGAGATATGGAAAATTCAAGTGGTTCAAGGGTGACTTGTCTTATACTAAGAATACTAACTTTTGT
GTTTCTTTTCATTTCTTTCTTCATTCTTATCACCACTTCCCAAACTGTTCAATCAGTTCAGCTCCATTTCAATAGTTATCATGCTTTTAGGTATATGCTTGCTACTATTA
TCATCGGGATCATATTCAATCTTTTGCAAATCGCGTTCACACTCTTTAACATCGTTAAAAATGGCAACAGTACTATATTATTCGATTTCTTTGGCGACAAGTTTTTGTCA
TACCTTCTAGCAACAGGCACAGCAGCTGGACTTGGACTGGCAGTGGATTTGAAAAAAATAGACCCAGATGATTTATTTGGTTCATTCTTTGATAAGGCATATGCAGCATC
GACTCTTCTTTTGTTTGCATTCTTTTGTGCTGCAGCTGTCTCTATTCTCTCTTCCTTTGCACTCTCCATCAGATCTTAA
Protein sequenceShow/hide protein sequence
MENSSGSRVTCLILRILTFVFLFISFFILITTSQTVQSVQLHFNSYHAFRYMLATIIIGIIFNLLQIAFTLFNIVKNGNSTILFDFFGDKFLSYLLATGTAAGLGLAVDL
KKIDPDDLFGSFFDKAYAASTLLLFAFFCAAAVSILSSFALSIRS