CuGenDBv2

Gene ID	Lsi02G016790
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L35
Genome location	chr02:22600937..22602321
RNA-Seq Expression	Lsi02G016790
Synteny	Lsi02G016790
Gene Ontology terms	GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001854 - Ribosomal protein L29/L35 IPR036049 - Ribosomal protein L29/L35 superfamily IPR045059 - 60S ribosomal protein L35

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004149815.1 60S ribosomal protein L35 [Cucumis sativus]

6.1e-50

96.75

Show/hide

Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELRQKSKADLLLQLKDLKAEL+LLRVAKVTGGA NKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTERQKKKEMYFPLRKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

XP_008463526.1 PREDICTED: 60S ribosomal protein L35 [Cucumis melo]

1.4e-49

95.93

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Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELRQKSKADLLLQLKDLKAEL+LLRVAKVTGGA NKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTERQKKKE+YFPLRKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

XP_022134532.1 60S ribosomal protein L35 [Momordica charantia]

1.0e-49

96.75

Show/hide

Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELRQKSKADLL QLKDLKAELALLRVAKVTGGA NKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTERQKKKEMYFPLRKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

XP_022139337.1 60S ribosomal protein L35-2 [Momordica charantia]

5.2e-49

95.93

Show/hide

Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELRQKSKADLL QLKDLKAELALLRVAKVTGGA NKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTERQKKKEMY+PLRKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

XP_038891782.1 60S ribosomal protein L35-like [Benincasa hispida]

3.0e-49

95.93

Show/hide

Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELRQKSK DLL QLKDLKAELALLRVAKVTGGA NKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTERQKKKEMY+PLRKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KLK6 Uncharacterized protein

3.3e-49

95.12

Show/hide

Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELRQKSK DLL QLKDLKAELALLRVAKVTGGA NKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTERQKKKEMY+PLRKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

A0A0A0KQT2 Uncharacterized protein

3.0e-50

96.75

Show/hide

Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELRQKSKADLLLQLKDLKAEL+LLRVAKVTGGA NKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTERQKKKEMYFPLRKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

A0A1S3CJH2 60S ribosomal protein L35

6.6e-50

95.93

Show/hide

Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELRQKSKADLLLQLKDLKAEL+LLRVAKVTGGA NKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTERQKKKE+YFPLRKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

A0A6J1BZV3 60S ribosomal protein L35

5.0e-50

96.75

Show/hide

Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELRQKSKADLL QLKDLKAELALLRVAKVTGGA NKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTERQKKKEMYFPLRKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

A0A6J1CDN9 60S ribosomal protein L35-2

2.5e-49

95.93

Show/hide

Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELRQKSKADLL QLKDLKAELALLRVAKVTGGA NKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTERQKKKEMY+PLRKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

SwissProt top hits

e value

%identity

Alignment

O80626 60S ribosomal protein L35-2

9.1e-49

91.06

Show/hide

Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELR+KSKADL  QLK+ KAELALLRVAKVTGGA NKLSKIKVVR SIAQVLTVISQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTER+KKKEMYFP+RKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

Q9LZ41 60S ribosomal protein L35-4

4.5e-48

90.24

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Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELR KSK DL  QLK+ KAELALLRVAKVTGGA NKLSKIKVVR SIAQVLTVISQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTER+KKKEMYFP+RKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

Q9M3D2 60S ribosomal protein L35-3

2.9e-47

88.62

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Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELR KSK+DL  QLK+LKAELA LRVAKVTGGA NKLSKIKVVR SIAQVLTV SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTER+KKK+MYFP+RKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

Q9M5L0 60S ribosomal protein L35

5.4e-49

91.06

Show/hide

Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELRQK+KA+LL QLKDLKAELALLRVAKVTGGA NKLSKIKVVRLSIAQVLTVISQKQK ALREAYK KK LPLDLRPKKTRAIRRRLTK+Q 
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTER+KKKEMYFP+RKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

Q9SF53 60S ribosomal protein L35-1

2.7e-48

90.24

Show/hide

Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELR+KSK+DL  QLK+LKAELALLRVAKVTGGA NKLSKIKVVR SIAQVLTV SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTER+KKKEMYFP+RKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

Arabidopsis top hits

e value

%identity

Alignment

AT2G39390.1 Ribosomal L29 family protein

6.5e-50

91.06

Show/hide

Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELR+KSKADL  QLK+ KAELALLRVAKVTGGA NKLSKIKVVR SIAQVLTVISQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTER+KKKEMYFP+RKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

AT3G09500.1 Ribosomal L29 family protein

1.9e-49

90.24

Show/hide

Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELR+KSK+DL  QLK+LKAELALLRVAKVTGGA NKLSKIKVVR SIAQVLTV SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTER+KKKEMYFP+RKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

AT3G55170.1 Ribosomal L29 family protein

2.1e-48

88.62

Show/hide

Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELR KSK+DL  QLK+LKAELA LRVAKVTGGA NKLSKIKVVR SIAQVLTV SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTER+KKK+MYFP+RKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

AT3G55170.2 Ribosomal L29 family protein

2.1e-48

88.62

Show/hide

Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELR KSK+DL  QLK+LKAELA LRVAKVTGGA NKLSKIKVVR SIAQVLTV SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTER+KKK+MYFP+RKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

AT5G02610.1 Ribosomal L29 family protein

3.2e-49

90.24

Show/hide

Query:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA
        MARIKVHELR KSK DL  QLK+ KAELALLRVAKVTGGA NKLSKIKVVR SIAQVLTVISQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTK+QA
Subjt:  MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQA

Query:  SLKTERQKKKEMYFPLRKYAIKV
        SLKTER+KKKEMYFP+RKYAIKV
Subjt:  SLKTERQKKKEMYFPLRKYAIKV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGAGAATCAAGGTTCATGAGTTGAGGCAGAAATCGAAGGCGGATCTGTTGTTGCAGCTTAAGGATCTTAAGGCGGAGCTTGCTCTCCTTCGAGTCGCCAAAGTCAC
CGGCGGTGCCCTGAACAAGCTATCCAAAATCAAGGTAGTGAGATTGTCAATCGCTCAAGTCTTGACAGTAATTTCTCAGAAGCAGAAGTCTGCGTTGAGGGAAGCTTACA
AGAAGAAGAAGCTATTGCCTCTCGATCTTCGCCCAAAGAAGACCAGGGCCATTCGTAGAAGGCTCACCAAGTACCAGGCTTCTTTGAAAACTGAGAGACAGAAGAAGAAA
GAAATGTACTTTCCATTGAGGAAATATGCTATTAAGGTGTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGALNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKYQASLKTERQKKK
EMYFPLRKYAIKV

Lsi02G016790 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome