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Lsi02G016890 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G016890
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLisH domain-containing protein
Genome locationchr02:22662453..22665119
RNA-Seq ExpressionLsi02G016890
SyntenyLsi02G016890
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9451329.1 hypothetical protein C3L33_16732, partial [Rhododendron williamsianum]6.1e-3291.57Show/hide
Query:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSITKIFLPS
        MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDR IEK++GLPPALLGSCNDRAKQLHASPSGS++ I LPS
Subjt:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSITKIFLPS

TYK05747.1 protein TONNEAU 1a-like isoform X1 [Cucumis melo var. makuwa]4.0e-3994.38Show/hide
Query:  IVTAKPRPKDCSNMDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI
        ++TAKPRPKDC+NMDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSG +
Subjt:  IVTAKPRPKDCSNMDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI

XP_008463551.1 PREDICTED: protein TONNEAU 1b-like isoform X2 [Cucumis melo]1.0e-3197.37Show/hide
Query:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI
        MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSG +
Subjt:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI

XP_038889099.1 protein TONNEAU 1a-like isoform X1 [Benincasa hispida]1.0e-3197.37Show/hide
Query:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI
        MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSG +
Subjt:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI

XP_038889100.1 protein TONNEAU 1b-like isoform X2 [Benincasa hispida]1.0e-3197.37Show/hide
Query:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI
        MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSG +
Subjt:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI

TrEMBL top hitse value%identityAlignment
A0A0A0KS40 LisH domain-containing protein5.1e-3297.37Show/hide
Query:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI
        MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSG +
Subjt:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI

A0A1S3CJH5 protein TONNEAU 1a-like isoform X15.1e-3297.37Show/hide
Query:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI
        MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSG +
Subjt:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI

A0A1S3CL40 protein TONNEAU 1b-like isoform X25.1e-3297.37Show/hide
Query:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI
        MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSG +
Subjt:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI

A0A5D3C1P8 Protein TONNEAU 1a-like isoform X11.9e-3994.38Show/hide
Query:  IVTAKPRPKDCSNMDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI
        ++TAKPRPKDC+NMDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSG +
Subjt:  IVTAKPRPKDCSNMDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI

A0A6A4L7S0 Uncharacterized protein (Fragment)3.0e-3291.57Show/hide
Query:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSITKIFLPS
        MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDR IEK++GLPPALLGSCNDRAKQLHASPSGS++ I LPS
Subjt:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSITKIFLPS

SwissProt top hitse value%identityAlignment
O95684 Centrosomal protein 431.9e-0437.84Show/hide
Query:  EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSITKIF
        E  +L+ L+ +TLE  GVL +I+AELRA+VF A+EE+++V  K   +  +L    N +  +L AS      + F
Subjt:  EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSITKIF

Q4R7V3 Centrosomal protein 431.9e-0437.84Show/hide
Query:  EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSITKIF
        E  +L+ L+ +TLE  GVL +I+AELRA+VF A+EE+++V  K   +  +L    N +  +L AS      + F
Subjt:  EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSITKIF

Q4V7C1 Centrosomal protein 431.9e-0437.84Show/hide
Query:  EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSITKIF
        E  +L+ L+ +TLE  GVL +I+AELRA+VF A+EE+++V  K   +  +L    N +  +L AS      + F
Subjt:  EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSITKIF

Q9FQ24 Protein TONNEAU 1b1.3e-3292.11Show/hide
Query:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI
        MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIE ++GLPPALLGSCNDRA+QLHASPSG +
Subjt:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI

Q9FQ25 Protein TONNEAU 1a2.4e-3189.47Show/hide
Query:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI
        MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIE ++G PPALLGSCNDRA++LHASPSG +
Subjt:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI

Arabidopsis top hitse value%identityAlignment
AT3G55000.1 tonneau family protein1.7e-3289.47Show/hide
Query:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI
        MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIE ++G PPALLGSCNDRA++LHASPSG +
Subjt:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI

AT3G55005.1 tonneau 1b (TON1b)9.1e-3492.11Show/hide
Query:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI
        MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIE ++GLPPALLGSCNDRA+QLHASPSG +
Subjt:  MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTCCGGAAAATCGTCACAGCAAAGCCAAGGCCGAAGGATTGCTCAAACATGGACGATTATACCAGAGAAATGATGGACTTGAAGACCCTTGTCACTCGGACTCT
CGAGAAGAAGGGCGTCCTCGCTAAGATCCGTGCTGAACTTAGAGCTAGTGTATTCGAGGCAATTGAAGAAGAGGATCGTGTTATTGAGAAAGATGATGGATTGCCGCCTG
CTTTACTTGGTAGTTGCAATGATCGAGCAAAGCAGCTTCATGCTTCACCATCAGGTTCGATTACAAAAATTTTTCTCCCCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTCCGGAAAATCGTCACAGCAAAGCCAAGGCCGAAGGATTGCTCAAACATGGACGATTATACCAGAGAAATGATGGACTTGAAGACCCTTGTCACTCGGACTCT
CGAGAAGAAGGGCGTCCTCGCTAAGATCCGTGCTGAACTTAGAGCTAGTGTATTCGAGGCAATTGAAGAAGAGGATCGTGTTATTGAGAAAGATGATGGATTGCCGCCTG
CTTTACTTGGTAGTTGCAATGATCGAGCAAAGCAGCTTCATGCTTCACCATCAGGTTCGATTACAAAAATTTTTCTCCCCTCTTGA
Protein sequenceShow/hide protein sequence
MKLRKIVTAKPRPKDCSNMDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDDGLPPALLGSCNDRAKQLHASPSGSITKIFLPS