CuGenDBv2

Gene ID	Lsi02G017100
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Transcription initiation factor IIF subunit beta
Genome location	chr02:22835277..22838228
RNA-Seq Expression	Lsi02G017100
Synteny	Lsi02G017100
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR003196 - Transcription initiation factor IIF, beta subunit IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily IPR040450 - TFIIF beta subunit, HTH domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004143805.1 general transcription factor IIF subunit 2 isoform X3 [Cucumis sativus]

1.0e-90

79.82

Show/hide

Query:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI
        FTMELA TDSGNALRSYSLNMSTDFIPMSVFSESSQ    KFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQ                   
Subjt:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI

Query:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC
                      IQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV+KGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLC
Subjt:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC

Query:  VYNNKGVHQGTYELKPEYKESCEETKLR
        VYNNKGVHQGTYELKPEY+ES E+TK R
Subjt:  VYNNKGVHQGTYELKPEYKESCEETKLR

XP_008465664.1 PREDICTED: general transcription factor IIF subunit 2 isoform X1 [Cucumis melo]

5.4e-92

80.09

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Query:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQET---LRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVW
        FTMELA TDSGNALRSY+LNMSTDFIPMSVFSESSQ++   L KFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQ                
Subjt:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQET---LRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVW

Query:  LLIYCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILK
                         IQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV+KGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILK
Subjt:  LLIYCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILK

Query:  DLCVYNNKGVHQGTYELKPEYKESCEETKLR
        DLCVYNNKGVHQGTYELKPEYKES EETK R
Subjt:  DLCVYNNKGVHQGTYELKPEYKESCEETKLR

XP_008465665.1 PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo]

3.5e-91

80.7

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Query:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI
        FTMELA TDSGNALRSY+LNMSTDFIPMSVFSESSQ    KFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQ                   
Subjt:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI

Query:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC
                      IQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV+KGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLC
Subjt:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC

Query:  VYNNKGVHQGTYELKPEYKESCEETKLR
        VYNNKGVHQGTYELKPEYKES EETK R
Subjt:  VYNNKGVHQGTYELKPEYKESCEETKLR

XP_031741396.1 general transcription factor IIF subunit 2 isoform X2 [Cucumis sativus]

1.0e-90

79.82

Show/hide

Query:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI
        FTMELA TDSGNALRSYSLNMSTDFIPMSVFSESSQ    KFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQ                   
Subjt:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI

Query:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC
                      IQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV+KGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLC
Subjt:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC

Query:  VYNNKGVHQGTYELKPEYKESCEETKLR
        VYNNKGVHQGTYELKPEY+ES E+TK R
Subjt:  VYNNKGVHQGTYELKPEYKESCEETKLR

XP_038889594.1 general transcription factor IIF subunit 2-like [Benincasa hispida]

2.7e-91

81.42

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Query:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI
        FTMELAGTDSGN LRSYSLNMSTDFIPMSVFSESSQ    KFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQ                   
Subjt:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI

Query:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC
                      IQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV+KGSETKRLRKERGELEKIIFRLFERQ+YWTSKQLIQETDQPEQYMKEILKDLC
Subjt:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC

Query:  VYNNKGVHQGTYELKPEYKESCEETK
        VYNNKGVHQGTYELKPEYKES EE K
Subjt:  VYNNKGVHQGTYELKPEYKESCEETK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPB8 Transcription initiation factor IIF subunit beta

1.7e-91

80.7

Show/hide

Query:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI
        FTMELA TDSGNALRSY+LNMSTDFIPMSVFSESSQ    KFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQ                   
Subjt:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI

Query:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC
                      IQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV+KGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLC
Subjt:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC

Query:  VYNNKGVHQGTYELKPEYKESCEETKLR
        VYNNKGVHQGTYELKPEYKES EETK R
Subjt:  VYNNKGVHQGTYELKPEYKESCEETKLR

A0A1S3CPE2 Transcription initiation factor IIF subunit beta

2.6e-92

80.09

Show/hide

Query:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQET---LRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVW
        FTMELA TDSGNALRSY+LNMSTDFIPMSVFSESSQ++   L KFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQ                
Subjt:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQET---LRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVW

Query:  LLIYCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILK
                         IQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV+KGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILK
Subjt:  LLIYCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILK

Query:  DLCVYNNKGVHQGTYELKPEYKESCEETKLR
        DLCVYNNKGVHQGTYELKPEYKES EETK R
Subjt:  DLCVYNNKGVHQGTYELKPEYKESCEETKLR

A0A6J1BZ89 Transcription initiation factor IIF subunit beta

3.2e-90

79.82

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Query:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI
        FTMELAGTDSGN+LRSYSLNMSTDFIPMSVFSES      KFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQ                   
Subjt:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI

Query:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC
                      IQVIDHVTGGHMRPMPGMDV SFGAAEKKKVV+KGSETKRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPEQYMKEILKDLC
Subjt:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC

Query:  VYNNKGVHQGTYELKPEYKESCEETKLR
        VYNNKGVHQGTYELKPEYKES +ETK R
Subjt:  VYNNKGVHQGTYELKPEYKESCEETKLR

A0A6J1HK34 Transcription initiation factor IIF subunit beta

7.1e-90

78.95

Show/hide

Query:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI
        FTMELA TDSG ALR+YSLNMSTDFIPMSVFSES+Q    KFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQ                   
Subjt:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI

Query:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC
                      IQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV+KGSE KRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPEQYMKEILKDLC
Subjt:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC

Query:  VYNNKGVHQGTYELKPEYKESCEETKLR
        VYNNKGVHQGTYELKPEYKE+CEETK R
Subjt:  VYNNKGVHQGTYELKPEYKESCEETKLR

A0A6J1JIQ3 Transcription initiation factor IIF subunit beta

7.1e-90

78.95

Show/hide

Query:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI
        FTMELA TDSG ALR+YSLNMSTDFIPMSVFSES+Q    KFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQ                   
Subjt:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI

Query:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC
                      IQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV+KGSE KRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPEQYMKEILKDLC
Subjt:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC

Query:  VYNNKGVHQGTYELKPEYKESCEETKLR
        VYNNKGVHQGTYELKPEYKE+CEETK R
Subjt:  VYNNKGVHQGTYELKPEYKESCEETKLR

SwissProt top hits

e value

%identity

Alignment

P13984 General transcription factor IIF subunit 2

1.8e-10

Show/hide

Query:  MSVFSESSQETLRKFTVEGKILNKFDMKP-HDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLIYCSHDLLVKISKYSIQVIDHVTGGHM
        ++VF+ESS +   K ++EG ++ + + +P   +N  R  +L  E + K +  S+Q+     T+Y                 V   +Y+I+          
Subjt:  MSVFSESSQETLRKFTVEGKILNKFDMKP-HDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLIYCSHDLLVKISKYSIQVIDHVTGGHM

Query:  RPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESCEETK
                      E+K    K  + KR R ++  +  ++F  FE+  Y+  K L+  T QP  Y+KEILK++ V N KG+H+ T+ELKPEY+    E K
Subjt:  RPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESCEETK

P41900 General transcription factor IIF subunit 2

7.0e-10

40.51

Show/hide

Query:  KGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESCEETK
        K +E K+ R ++  +  ++F  FE+  Y+  K L++ T+QP  Y+KEILKD+C YN K  H+  +ELK EY+    E K
Subjt:  KGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESCEETK

Q03123 General transcription factor IIF subunit 2

1.1e-10

41.77

Show/hide

Query:  KGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESCEETK
        K  + KR R ++ ++  ++F  FE+  Y+  K L+  T QP  Y+KEIL+D+ +YN KG H+ T+ELKPEY+    E K
Subjt:  KGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESCEETK

Q2T9L9 General transcription factor IIF subunit 2

1.8e-10

27.5

Show/hide

Query:  MSVFSESSQETLRKFTVEGKILNKFDMKP-HDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLIYCSHDLLVKISKYSIQVIDHVTGGHM
        ++VF+ESS +   K ++EG ++ + + +P  ++N  R  +L  E + K +  S+Q+     T+Y                 V   +Y+I+          
Subjt:  MSVFSESSQETLRKFTVEGKILNKFDMKP-HDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLIYCSHDLLVKISKYSIQVIDHVTGGHM

Query:  RPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESCEETK
                      E+K    K  + KR R ++  +  ++F  FE+  Y+  K L+  T QP  Y+K+ILK++ V N KG+H+ T+ELKPEY+    E K
Subjt:  RPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESCEETK

Q8R0A0 General transcription factor IIF subunit 2

4.1e-10

Show/hide

Query:  MSVFSESSQETLRKFTVEGKILNKFDMKP-HDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLIYCSHDLLVKISKYSIQVIDHVTGGHM
        ++VF+ESS +   K ++EG ++ + + +P   +N  +  +L  E + K +  S+Q+     T+Y                 V   +Y+I+          
Subjt:  MSVFSESSQETLRKFTVEGKILNKFDMKP-HDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLIYCSHDLLVKISKYSIQVIDHVTGGHM

Query:  RPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESCEETK
                      E+K    K  + KR R ++  +  ++F  FE+  Y+  K L+  T QP  Y+KEILK++ + N KG+H+ T+ELKPEY+    E K
Subjt:  RPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESCEETK

Arabidopsis top hits

e value

%identity

Alignment

AT1G75510.1 Transcription initiation factor IIF, beta subunit

3.5e-49

47.79

Show/hide

Query:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI
        F M + G + GN  + Y+LNM TDF+PM  FS+ +Q        EGK+ +KFDMKP+ + +E Y +LCRERT K+M K+RQ                   
Subjt:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI

Query:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKK-VVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKD
                      IQVID+  G HMRPMPGM  ++S  + EK+K    K +E KR R++RGELE I+F+LFE Q  WT KQL+QETDQP Q++KEIL +
Subjt:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKK-VVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKD

Query:  LCVYNNKGVHQGTYELKPEYKESCEE
        LCVYN +G +QGTYELKPEYK+S E+
Subjt:  LCVYNNKGVHQGTYELKPEYKESCEE

AT3G52270.1 Transcription initiation factor IIF, beta subunit

4.9e-59

53.57

Show/hide

Query:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI
        F MELA  DSGN  R Y+L+MS DFIPM+VF ESS     K +VEGKI NKFDM+PH++N+E YG+LCRERT+K M K+RQ                   
Subjt:  FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLI

Query:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC
                      IQVID+  G HMRPMPGM ++   A EKKK+  + SE KR R++R E+E+++F LFERQ+ WT + LIQETDQPEQ++K++LKDLC
Subjt:  YCSHDLLVKISKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC

Query:  VYNNKGVHQGTYELKPEYKESCEE
        +YNNKG +QGTYELKPEYK++ +E
Subjt:  VYNNKGVHQGTYELKPEYKESCEE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TTCACTATGGAATTGGCTGGCACTGACTCTGGAAATGCATTAAGGTCCTACTCCTTGAATATGTCCACAGACTTCATTCCAATGTCTGTATTTTCCGAGTCATCACAAGA
GACATTACGGAAGTTTACGGTCGAAGGGAAAATACTTAACAAATTTGACATGAAGCCACATGATCAGAATCTTGAGAGGTACGGGAAACTCTGTCGTGAAAGAACTCACA
AGTCTATGACCAAAAGCAGACAGATTCAGGTCTCCTTTGTAACTTCTTACGCAGTGTACTTGGGTGTTTGGTTACTTATTTATTGTTCTCACGATCTTCTGGTTAAAATT
TCCAAATATTCCATACAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCTATGCCAGGGATGGACGTGTTGTCATTTGGAGCTGCAGAGAAGAAGAAAGTAGTGAC
CAAGGGATCGGAAACAAAGAGGTTGAGAAAGGAGCGTGGTGAATTGGAGAAGATTATTTTTAGGCTTTTTGAAAGACAGGCATATTGGACGTCAAAACAGTTGATTCAAG
AAACTGACCAACCTGAACAATATATGAAGGAAATACTTAAAGACCTCTGTGTCTACAACAACAAAGGTGTTCACCAAGGAACATATGAGCTGAAGCCAGAATACAAGGAA
TCATGTGAGGAAACGAAACTGCGATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

FTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQETLRKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVSFVTSYAVYLGVWLLIYCSHDLLVKI
SKYSIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE
SCEETKLR

Lsi02G017100 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome