CuGenDBv2

Gene ID	Lsi02G017230
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	zinc knuckle (CCHC-type) family protein
Genome location	chr02:22929330..22931496
RNA-Seq Expression	Lsi02G017230
Synteny	Lsi02G017230
Gene Ontology terms	GO:2000767 - positive regulation of cytoplasmic translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0003727 - single-stranded RNA binding (molecular function) GO:0003729 - mRNA binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0045182 - translation regulator activity (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR025829 - Zinc knuckle CX2CX3GHX4C IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004143799.1 uncharacterized protein LOC101211176 [Cucumis sativus]

8.0e-93

78.64

Show/hide

Query:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI
        KAKGSAEARKRTSEALKAFF+DPENRRKRS AMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNR+TCE+S  N  P+  TIQRHCGI
Subjt:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI

Query:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI
        CG+KGHN+RNCQKS+           A R S +N LR NLISE  R  N N RVRQYHCRIC ++GHS+RNCP+ DREGNGL+TRRSY+CKLCHEKGHNI
Subjt:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI

Query:  RTCPNRSMNNLQKNSPVALN
        RTCPNRS NNLQKN PVALN
Subjt:  RTCPNRSMNNLQKNSPVALN

XP_008465678.1 PREDICTED: uncharacterized protein LOC103503314 isoform X1 [Cucumis melo]

2.6e-91

79.55

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Query:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI
        KAKGSAEARKRTSEALKAFF+DPENRRKRS AMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCE+S  N  PMI TIQRHCGI
Subjt:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI

Query:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI
        CG+KGHNRRNCQKS++            R S +N LR NLISE  R  N N RVRQ HCRIC K GHS+  CP+IDREGNGLTTRR YTCKLCHEKGHNI
Subjt:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI

Query:  RTCPNRSMNNLQKNSPVALN
        RTCP RSMN+LQKN PVALN
Subjt:  RTCPNRSMNNLQKNSPVALN

XP_008465679.1 PREDICTED: uncharacterized protein LOC103503314 isoform X2 [Cucumis melo]

2.6e-91

79.55

Show/hide

Query:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI
        KAKGSAEARKRTSEALKAFF+DPENRRKRS AMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCE+S  N  PMI TIQRHCGI
Subjt:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI

Query:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI
        CG+KGHNRRNCQKS++            R S +N LR NLISE  R  N N RVRQ HCRIC K GHS+  CP+IDREGNGLTTRR YTCKLCHEKGHNI
Subjt:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI

Query:  RTCPNRSMNNLQKNSPVALN
        RTCP RSMN+LQKN PVALN
Subjt:  RTCPNRSMNNLQKNSPVALN

XP_038889907.1 uncharacterized protein LOC120079678 isoform X1 [Benincasa hispida]

1.4e-108

88.18

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Query:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI
        KAKG+AEARKRTSEALKAFF DPENR+KRSIAMKGVKFYCKNCGREGHRRHYCPELKEDS DRRFRCRVCGEKGHNRRTCE+SR +SIPM  TIQR CGI
Subjt:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI

Query:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI
        CG KGHN+RNCQKSELSNPTNV+INYA R SRRN LRLNLI+++ R GN N RVRQYHCRICNKNGHSRRNCPN DREGNGLTTRRSYTCKLCHEKGHNI
Subjt:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI

Query:  RTCPNRSMNNLQKNSPVALN
        RTCPNRSMNNLQ N PVALN
Subjt:  RTCPNRSMNNLQKNSPVALN

XP_038889908.1 uncharacterized protein LOC120079678 isoform X2 [Benincasa hispida]

1.4e-108

88.18

Show/hide

Query:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI
        KAKG+AEARKRTSEALKAFF DPENR+KRSIAMKGVKFYCKNCGREGHRRHYCPELKEDS DRRFRCRVCGEKGHNRRTCE+SR +SIPM  TIQR CGI
Subjt:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI

Query:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI
        CG KGHN+RNCQKSELSNPTNV+INYA R SRRN LRLNLI+++ R GN N RVRQYHCRICNKNGHSRRNCPN DREGNGLTTRRSYTCKLCHEKGHNI
Subjt:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI

Query:  RTCPNRSMNNLQKNSPVALN
        RTCPNRSMNNLQ N PVALN
Subjt:  RTCPNRSMNNLQKNSPVALN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KS13 Uncharacterized protein

3.9e-93

78.64

Show/hide

Query:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI
        KAKGSAEARKRTSEALKAFF+DPENRRKRS AMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNR+TCE+S  N  P+  TIQRHCGI
Subjt:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI

Query:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI
        CG+KGHN+RNCQKS+           A R S +N LR NLISE  R  N N RVRQYHCRIC ++GHS+RNCP+ DREGNGL+TRRSY+CKLCHEKGHNI
Subjt:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI

Query:  RTCPNRSMNNLQKNSPVALN
        RTCPNRS NNLQKN PVALN
Subjt:  RTCPNRSMNNLQKNSPVALN

A0A1S3CPF7 uncharacterized protein LOC103503314 isoform X2

1.3e-91

79.55

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Query:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI
        KAKGSAEARKRTSEALKAFF+DPENRRKRS AMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCE+S  N  PMI TIQRHCGI
Subjt:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI

Query:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI
        CG+KGHNRRNCQKS++            R S +N LR NLISE  R  N N RVRQ HCRIC K GHS+  CP+IDREGNGLTTRR YTCKLCHEKGHNI
Subjt:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI

Query:  RTCPNRSMNNLQKNSPVALN
        RTCP RSMN+LQKN PVALN
Subjt:  RTCPNRSMNNLQKNSPVALN

A0A1S3CQW6 uncharacterized protein LOC103503314 isoform X1

1.3e-91

79.55

Show/hide

Query:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI
        KAKGSAEARKRTSEALKAFF+DPENRRKRS AMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCE+S  N  PMI TIQRHCGI
Subjt:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI

Query:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI
        CG+KGHNRRNCQKS++            R S +N LR NLISE  R  N N RVRQ HCRIC K GHS+  CP+IDREGNGLTTRR YTCKLCHEKGHNI
Subjt:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI

Query:  RTCPNRSMNNLQKNSPVALN
        RTCP RSMN+LQKN PVALN
Subjt:  RTCPNRSMNNLQKNSPVALN

A0A6J1GJ81 uncharacterized protein LOC111454354 isoform X1

1.0e-80

72.99

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Query:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI
        KAKGSAEARKRTSEALKAFF+DP+NR+KRSIAMKG+KFYCKNCGREGHRRHYCPELK DSIDRRFRCRVCGEKGHNRRTC++SR N  PM  TIQ HC I
Subjt:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI

Query:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI
        CG KGH+ RNC KSE+ N +N  I+Y +  +  N L LNLI  DR T N +SRVRQY CRIC +NGH+R+NCPNID + N  T RR+Y+CKLCHEKGHN 
Subjt:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI

Query:  RTCPNRSMNNL
        RTCP   MNNL
Subjt:  RTCPNRSMNNL

A0A6J1KMZ5 uncharacterized protein LOC111496065 isoform X1

3.2e-79

69.55

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Query:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI
        KAKGSAEARKRTSEALKAFF+DP+NR+KRSI+MKG+KFYCKNCGREGHRRHYCPELK+DSIDRRFRCRVCGEKGHNRRTC++SR NS PM   ++     
Subjt:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI

Query:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI
           KGH+RRNC KSE+ NP N   +Y +  +  N L LNLI+ DR T N +SRVRQY CRIC +NGH+R+NCPNID + N  T R++Y+CKLCHEKGHN 
Subjt:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNI

Query:  RTCPNRSMNNLQKNSPVALN
        RTCP  +MNNLQKNSP A+N
Subjt:  RTCPNRSMNNLQKNSPVALN

SwissProt top hits

e value

%identity

Alignment

Q04832 DNA-binding protein HEXBP

2.8e-11

31.82

Show/hide

Query:  CKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTC-ERSRSNSIPMITTIQRHCGICGVKGHNRRNCQKSELSNPTN-------VQINYARRH-
        C+NCG+EGH    CPE      +R   C  CGE+GH  R C   +RS +   +T     C  CG  GH  R+C  S               Q  +  R  
Subjt:  CKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTC-ERSRSNSIPMITTIQRHCGICGVKGHNRRNCQKSELSNPTN-------VQINYARRH-

Query:  -SRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNIRTCPN
         S + G R     +  R+G          C  C   GH  R+CPN     +G   R   TC  C + GH  R CPN
Subjt:  -SRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNIRTCPN

Arabidopsis top hits

e value

%identity

Alignment

AT5G20220.1 zinc knuckle (CCHC-type) family protein

1.9e-39

48.85

Show/hide

Query:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI
        KAKG+  ARK  SE++KAFF++P NR +RS++MKG KFYCKNCG+EGHRRHYCPEL  ++ DR+FRCR CG KGHNRRTC +S+S     I+T    CGI
Subjt:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI

Query:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPN
        CG +GHN R C+K     PT V  + +  +S  +G+                ++  Y C  C K GH+ R CP+
Subjt:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPN

AT5G20220.2 zinc knuckle (CCHC-type) family protein

1.9e-39

48.85

Show/hide

Query:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI
        KAKG+  ARK  SE++KAFF++P NR +RS++MKG KFYCKNCG+EGHRRHYCPEL  ++ DR+FRCR CG KGHNRRTC +S+S     I+T    CGI
Subjt:  KAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGI

Query:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPN
        CG +GHN R C+K     PT V  + +  +S  +G+                ++  Y C  C K GH+ R CP+
Subjt:  CGVKGHNRRNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCATAAAGCCAAAGGAAGTGCTGAAGCAAGAAAACGTACTTCTGAAGCTTTGAAAGCATTCTTTAACGATCCAGAAAATCGTCGAAAGCGGAGCATTGCAATGAAAGG
AGTTAAATTTTACTGTAAAAACTGCGGCCGTGAAGGGCATCGAAGACACTATTGTCCAGAACTTAAGGAAGATTCAATTGATAGGCGATTCAGATGTCGAGTATGTGGAG
AGAAGGGCCATAACAGGAGAACTTGTGAGAGGTCTAGGTCGAATAGTATACCGATGATCACAACAATTCAGCGCCATTGCGGGATATGCGGTGTGAAGGGCCACAACAGG
AGGAACTGTCAGAAGTCCGAGTTGAGCAATCCAACTAACGTACAAATAAATTATGCACGTCGTCATAGCCGTCGCAATGGGTTGAGGCTGAATTTGATCAGTGAAGATAG
GAGGACGGGCAATGGAAATAGCAGAGTGAGGCAGTATCATTGTAGGATCTGCAATAAAAACGGTCACAGTCGGCGGAACTGTCCTAATATTGATAGGGAAGGTAACGGTC
TGACTACTAGAAGATCATACACCTGCAAACTATGCCATGAAAAAGGGCATAATATTAGGACATGCCCAAATAGAAGTATGAACAATCTACAGAAAAATTCTCCTGTTGCT
TTAAACTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MHKAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCERSRSNSIPMITTIQRHCGICGVKGHNR
RNCQKSELSNPTNVQINYARRHSRRNGLRLNLISEDRRTGNGNSRVRQYHCRICNKNGHSRRNCPNIDREGNGLTTRRSYTCKLCHEKGHNIRTCPNRSMNNLQKNSPVA
LN

Lsi02G017230 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome