; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G017240 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G017240
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNase H domain-containing protein
Genome locationchr02:22934269..22940062
RNA-Seq ExpressionLsi02G017240
SyntenyLsi02G017240
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143798.1 uncharacterized protein LOC101210930 isoform X1 [Cucumis sativus]7.6e-6479.75Show/hide
Query:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK
        ICDLPVSV+KG +LPKDTEEYLAS GLKNALYTIKAADMRP LFGSL PCTFH GDTSL G+ S QDAIKKRSREAIV EN+GSTVLTPT KDP+RKH+K
Subjt:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK

Query:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF
        LE SIVS ++SSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSV+      L IA   V E+
Subjt:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF

XP_011655308.1 uncharacterized protein LOC101210930 isoform X2 [Cucumis sativus]7.6e-6479.75Show/hide
Query:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK
        ICDLPVSV+KG +LPKDTEEYLAS GLKNALYTIKAADMRP LFGSL PCTFH GDTSL G+ S QDAIKKRSREAIV EN+GSTVLTPT KDP+RKH+K
Subjt:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK

Query:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF
        LE SIVS ++SSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSV+      L IA   V E+
Subjt:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF

XP_022946833.1 uncharacterized protein LOC111450776 [Cucurbita moschata]7.9e-6179.75Show/hide
Query:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK
        ICDLPVSVYKG +LPKDT EYL+S GLKNALYTIKAADMRP LF SL PCTFHD  T+LKG+AS QDAIKKRSRE IVSENIGSTVLTPTSKDP RKHVK
Subjt:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK

Query:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF
        LE S+VSQA  SN ESCFLEFDGASKGNPGQAGAGAVLRAHDGSV+      L IA   V E+
Subjt:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF

XP_023547239.1 uncharacterized protein LOC111806115 [Cucurbita pepo subsp. pepo]1.6e-6180.98Show/hide
Query:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK
        ICDLPVSVYKG +LPKDT EYLAS GLKNALYTIKAADMRP LF SL PCTFHD  TSLKG+AS QDAIKKRSRE IVSENIGSTVLTPTSKDP RKHVK
Subjt:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK

Query:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF
        LE S+VSQA  SN ESCFLEFDGASKGNPGQAGAGAVLRAHDGSV+      L IA   V E+
Subjt:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF

XP_038889960.1 uncharacterized protein LOC120079705 [Benincasa hispida]9.6e-6783.44Show/hide
Query:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK
        ICDLPVS+YKG +LPKDT+EYLAS GLKNALYTIKAADMRP LFGSL PCTFHDGDTS+KG+AS QDAIKKR REAIVSENIGS+VLTPTSKDPSRKHVK
Subjt:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK

Query:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF
        LE SIVS ALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSV+      L IA   V E+
Subjt:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF

TrEMBL top hitse value%identityAlignment
A0A0A0KTZ9 RNase H domain-containing protein3.7e-6479.75Show/hide
Query:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK
        ICDLPVSV+KG +LPKDTEEYLAS GLKNALYTIKAADMRP LFGSL PCTFH GDTSL G+ S QDAIKKRSREAIV EN+GSTVLTPT KDP+RKH+K
Subjt:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK

Query:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF
        LE SIVS ++SSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSV+      L IA   V E+
Subjt:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF

A0A1S3CPE1 uncharacterized protein LOC103503315 isoform X41.5e-6076.79Show/hide
Query:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVL-----TPTSKDPS
        ICDLPVSV+KG +LPKD+EEYLAS GLKNALYTIKAADMRP LFGSL PCTFHDGD SL G+ S QDAIKKRSREAIVSEN+GS+VL     TPTS+DP+
Subjt:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVL-----TPTSKDPS

Query:  RKHVKLEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF
        RKH+KLE SIVS  LSSN ESCFLEFDGASKGNPGQAGAGAVLRAHDGSV+      L IA   V E+
Subjt:  RKHVKLEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF

A0A5A7TCE2 RNase H family protein, putative isoform 21.5e-6076.79Show/hide
Query:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVL-----TPTSKDPS
        ICDLPVSV+KG +LPKD+EEYLAS GLKNALYTIKAADMRP LFGSL PCTFHDGD SL G+ S QDAIKKRSREAIVSEN+GS+VL     TPTS+DP+
Subjt:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVL-----TPTSKDPS

Query:  RKHVKLEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF
        RKH+KLE SIVS  LSSN ESCFLEFDGASKGNPGQAGAGAVLRAHDGSV+      L IA   V E+
Subjt:  RKHVKLEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF

A0A6J1G4Y7 uncharacterized protein LOC1114507763.8e-6179.75Show/hide
Query:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK
        ICDLPVSVYKG +LPKDT EYL+S GLKNALYTIKAADMRP LF SL PCTFHD  T+LKG+AS QDAIKKRSRE IVSENIGSTVLTPTSKDP RKHVK
Subjt:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK

Query:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF
        LE S+VSQA  SN ESCFLEFDGASKGNPGQAGAGAVLRAHDGSV+      L IA   V E+
Subjt:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF

A0A6J1KGD7 uncharacterized protein LOC1114939838.5e-6179.14Show/hide
Query:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK
        ICDLPVSVYKG +LPKDT+EYLAS GLKNALYTI+AADMRP LF SL PCTFHD  TSLKG+AS QDAIKKRSRE IVS+NIGSTVLTPTSKDP RKHVK
Subjt:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK

Query:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF
        LE S+VS+A  SN ESCFLEFDGASKGNPGQAGAGAVLRAHDGSV+      L IA   V E+
Subjt:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVV-----LPIADGEVQEF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein5.1e-2642.47Show/hide
Query:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK
        + DLPVSVYKG +LPKDTEEYL+S GLK  LY+++A+D++  +FG+L PC F +        +  +   + +S++    +   +++    S DP  K  K
Subjt:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK

Query:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVV
        +E S        + E+CF+EFDGASKGNPG +GA AVL+  DGS++
Subjt:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVV

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.0e-2140.27Show/hide
Query:  VSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVKLEVSI
        +SVYKG   PK  E+ L+SFG+KNAL+++ A+ ++   FG L PC      +S +G++  + +  KR       +++GS      S  P +K +K+E  +
Subjt:  VSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVKLEVSI

Query:  VSQALSS--------NRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVV
        + +  SS          +SC +EFDGASKGNPG+AGAGAVLRA D SV+
Subjt:  VSQALSS--------NRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVV

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.0e-2140.27Show/hide
Query:  VSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVKLEVSI
        +SVYKG   PK  E+ L+SFG+KNAL+++ A+ ++   FG L PC      +S +G++  + +  KR       +++GS      S  P +K +K+E  +
Subjt:  VSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVKLEVSI

Query:  VSQALSS--------NRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVV
        + +  SS          +SC +EFDGASKGNPG+AGAGAVLRA D SV+
Subjt:  VSQALSS--------NRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVV

AT5G51080.1 RNase H family protein3.6e-1937.67Show/hide
Query:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK
        + D PVSVYKG +L KDTEE L++ GLK  LY  +A D++  +FG+L PC F D                                  P++     K  +
Subjt:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK

Query:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVV
        LE S       ++ E+C +EFDGASKGNPG +GA AVL+  DGS++
Subjt:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVV

AT5G51080.2 RNase H family protein3.6e-1937.67Show/hide
Query:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK
        + D PVSVYKG +L KDTEE L++ GLK  LY  +A D++  +FG+L PC F D                                  P++     K  +
Subjt:  ICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVK

Query:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVV
        LE S       ++ E+C +EFDGASKGNPG +GA AVL+  DGS++
Subjt:  LEVSIVSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACATTGGCTTAATATGTGATCTTCCTGTTAGCGTGTATAAAGGAGAGGCATTGCCAAAAGACACTGAGGAATATCTTGCTTCCTTCGGGCTTAAGAATGCTCTGTA
CACTATTAAAGCTGCAGATATGAGACCTGGTCTTTTCGGTTCCCTCGAGCCCTGCACTTTTCATGATGGAGATACTTCTCTTAAAGGTAAGGCTTCTTGCCAGGATGCCA
TAAAGAAGAGATCAAGAGAGGCTATTGTATCAGAAAATATTGGGTCAACTGTTTTAACTCCCACATCAAAAGATCCCTCGAGGAAACATGTCAAGCTGGAAGTTTCCATT
GTGTCCCAAGCACTATCCTCTAACCGTGAATCTTGCTTTCTAGAATTTGATGGTGCCTCAAAGGGAAATCCTGGACAAGCTGGGGCAGGAGCTGTTCTGCGAGCTCATGA
TGGGAGTGTGGTGGTCCTTCCTATTGCAGACGGCGAAGTCCAGGAGTTTGAAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACATTGGCTTAATATGTGATCTTCCTGTTAGCGTGTATAAAGGAGAGGCATTGCCAAAAGACACTGAGGAATATCTTGCTTCCTTCGGGCTTAAGAATGCTCTGTA
CACTATTAAAGCTGCAGATATGAGACCTGGTCTTTTCGGTTCCCTCGAGCCCTGCACTTTTCATGATGGAGATACTTCTCTTAAAGGTAAGGCTTCTTGCCAGGATGCCA
TAAAGAAGAGATCAAGAGAGGCTATTGTATCAGAAAATATTGGGTCAACTGTTTTAACTCCCACATCAAAAGATCCCTCGAGGAAACATGTCAAGCTGGAAGTTTCCATT
GTGTCCCAAGCACTATCCTCTAACCGTGAATCTTGCTTTCTAGAATTTGATGGTGCCTCAAAGGGAAATCCTGGACAAGCTGGGGCAGGAGCTGTTCTGCGAGCTCATGA
TGGGAGTGTGGTGGTCCTTCCTATTGCAGACGGCGAAGTCCAGGAGTTTGAAGATTAA
Protein sequenceShow/hide protein sequence
MDIGLICDLPVSVYKGEALPKDTEEYLASFGLKNALYTIKAADMRPGLFGSLEPCTFHDGDTSLKGKASCQDAIKKRSREAIVSENIGSTVLTPTSKDPSRKHVKLEVSI
VSQALSSNRESCFLEFDGASKGNPGQAGAGAVLRAHDGSVVVLPIADGEVQEFED