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Lsi02G017310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G017310
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRRM domain-containing protein
Genome locationchr02:22992073..22992799
RNA-Seq ExpressionLsi02G017310
SyntenyLsi02G017310
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040563.1 glutamic acid-rich protein-like [Cucumis melo var. makuwa]6.2e-4685.25Show/hide
Query:  PMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEE------DEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATN
        PMGFPVFAMKR GKGGI LT+ SDSDI+FDEFFDEDED+FQ+E      DEDEILLPLKNTREWHAARPRGFGEGK YDTSIEDKLLQEMEQ REAQA N
Subjt:  PMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEE------DEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATN

Query:  INKLKNQSSSEPNSSRNVVQIA
        INKLKNQSSS+PNSSRNVV+IA
Subjt:  INKLKNQSSSEPNSSRNVVQIA

KAE8648511.1 hypothetical protein Csa_008404 [Cucumis sativus]2.9e-4384.62Show/hide
Query:  PMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKN
        PMGFPVFA+KR GKGGI LTE SDSDI FDEFFDE ED+FQ  DED+ILLPLKNT+EWHAARPRGFGEGK YDTSIED LLQEMEQ REAQA NINKLK+
Subjt:  PMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKN

Query:  QSSSEPNSSRNVVQIAG
        QSSS PNSSRNVV+IAG
Subjt:  QSSSEPNSSRNVVQIAG

XP_008465688.1 PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo]3.1e-4584.43Show/hide
Query:  PMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEE------DEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATN
        PMGFPVFAMKR GKGGI LT+ SDSDI+FDEFFDEDED+FQ+E      DEDEILLPLKNTREWHAARPRGFGEGK YDTSIEDKLLQEMEQ REAQA N
Subjt:  PMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEE------DEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATN

Query:  INKLKNQSSSEPNSSRNVVQIA
        INKLKNQ SS+PNSSRNVV+IA
Subjt:  INKLKNQSSSEPNSSRNVVQIA

XP_031741253.1 uncharacterized protein LOC101210443 [Cucumis sativus]1.9e-4284.48Show/hide
Query:  PMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKN
        PMGFPVFA+KR GKGGI LTE SDSDI FDEFFDE ED+FQ  DED+ILLPLKNT+EWHAARPRGFGEGK YDTSIED LLQEMEQ REAQA NINKLK+
Subjt:  PMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKN

Query:  QSSSEPNSSRNVVQIA
        QSSS PNSSRNVV+IA
Subjt:  QSSSEPNSSRNVVQIA

XP_038890170.1 uncharacterized protein LOC120079826 [Benincasa hispida]3.3e-4787.93Show/hide
Query:  PMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKN
        PMGFPVFAMKRSGKGG+ LTEQS+SDIEFD+FFDEDEDDFQ+EDEDEILLPLKNTREWH ARPRGFGEGK YDTSIEDKLLQEMEQSREAQA NINKL N
Subjt:  PMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKN

Query:  QSSSEPNSSRNVVQIA
        QS+SEP SSRN V+ A
Subjt:  QSSSEPNSSRNVVQIA

TrEMBL top hitse value%identityAlignment
A0A0A0KQN3 Uncharacterized protein9.9e-5062.75Show/hide
Query:  MASPGLEPETFSVKSDIIISHLAKLLLSSIFSGKIVYPRAKQRDARFPV------------------SSL-----PFHHDL----AVRPMGFPVFAMKRS
        MASPGLEPETFSV  D   +++A  + S  FS KIVYP   +     P+                  SS+     P H +L    A  PMGFPVFA+KR 
Subjt:  MASPGLEPETFSVKSDIIISHLAKLLLSSIFSGKIVYPRAKQRDARFPV------------------SSL-----PFHHDL----AVRPMGFPVFAMKRS

Query:  GKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNV
        GKGGI LTE SDSDI FDEFFDE ED+FQ  DED+ILLPLKNT+EWHAARPRGFGEGK YDTSIED LLQEMEQ REAQA NINKLK+QSSS PNSSRNV
Subjt:  GKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNV

Query:  VQIA
        V+IA
Subjt:  VQIA

A0A0A0KS07 Uncharacterized protein7.6e-5062.44Show/hide
Query:  MASPGLEPETFSVKSDIIISHLAKLLLSSIFSGKIVYPRAKQRDARFPV------------------SSL-----PFHHDL----AVRPMGFPVFAMKRS
        MASPGLEPETFSV  D   +++A  + S  FS KIVYP   +     P+                  SS+     P H +L    A  PMGFPVFA+KR 
Subjt:  MASPGLEPETFSVKSDIIISHLAKLLLSSIFSGKIVYPRAKQRDARFPV------------------SSL-----PFHHDL----AVRPMGFPVFAMKRS

Query:  GKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNV
        GKGGI LTE SDSDI FDEFFDE ED+FQ  DED+ILLPLKNT+EWHAARPRGFGEGK YDTSIED LLQEMEQ REAQA NINKLK+QS S PNSSRNV
Subjt:  GKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNV

Query:  VQIAG
        V+IAG
Subjt:  VQIAG

A0A1S3CPG6 uncharacterized protein LOC1035033171.5e-4584.43Show/hide
Query:  PMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEE------DEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATN
        PMGFPVFAMKR GKGGI LT+ SDSDI+FDEFFDEDED+FQ+E      DEDEILLPLKNTREWHAARPRGFGEGK YDTSIEDKLLQEMEQ REAQA N
Subjt:  PMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEE------DEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATN

Query:  INKLKNQSSSEPNSSRNVVQIA
        INKLKNQ SS+PNSSRNVV+IA
Subjt:  INKLKNQSSSEPNSSRNVVQIA

A0A5D3C5E5 Glutamic acid-rich protein-like3.0e-4685.25Show/hide
Query:  PMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEE------DEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATN
        PMGFPVFAMKR GKGGI LT+ SDSDI+FDEFFDEDED+FQ+E      DEDEILLPLKNTREWHAARPRGFGEGK YDTSIEDKLLQEMEQ REAQA N
Subjt:  PMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEE------DEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATN

Query:  INKLKNQSSSEPNSSRNVVQIA
        INKLKNQSSS+PNSSRNVV+IA
Subjt:  INKLKNQSSSEPNSSRNVVQIA

A0A6J1KJD4 uncharacterized protein LOC1114937285.5e-3272.81Show/hide
Query:  RPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLK
        RPM FPVF++K+ GKGG+ LT QSDSDIEFD   DED D       DE+LLPL N REW AARPRGFGEGKEYDTSIE+KLLQE+EQSR+AQA NINKLK
Subjt:  RPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLK

Query:  NQSSSEPNSSRNVV
        +Q  S PNSSRNVV
Subjt:  NQSSSEPNSSRNVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G70200.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.2e-1642.54Show/hide
Query:  FHHDLAVRPMGFPVFAMKRSGKGGIGLTEQSDSDIEFD----EFFDEDEDDFQEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSR
        F   +  R  GF  FA+ +   G   + E  D D E D    EF  EDE + +EEDE E  LP+   ++W   +PRGFG GK+Y+T IEDKLL E+EQS 
Subjt:  FHHDLAVRPMGFPVFAMKRSGKGGIGLTEQSDSDIEFD----EFFDEDEDDFQEEDEDEILLPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSR

Query:  EAQATNINKLKNQ--SSSEPNSSRNVVQIAGQSQ
        +AQA N+NKLKN    S +     N+++  G++Q
Subjt:  EAQATNINKLKNQ--SSSEPNSSRNVVQIAGQSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCGCCCGGACTCGAACCGGAGACCTTCAGTGTAAAGTCGGATATTATCATAAGCCACCTTGCAAAACTGCTTCTATCTTCCATCTTCAGTGGGAAAATCGTTTA
TCCGAGAGCGAAGCAGAGAGATGCTCGATTCCCGGTCTCTTCACTGCCGTTTCATCACGATTTGGCCGTCAGACCAATGGGGTTTCCTGTTTTTGCCATGAAGAGGTCTG
GGAAAGGCGGCATTGGCCTCACTGAGCAGAGTGATTCCGACATTGAGTTCGATGAATTTTTCGATGAGGATGAGGATGATTTTCAGGAGGAGGATGAGGATGAGATTCTT
TTGCCGTTAAAGAATACGAGAGAGTGGCATGCGGCGAGGCCTCGTGGATTTGGAGAAGGGAAGGAGTATGACACCTCAATTGAAGACAAATTGCTACAAGAAATGGAGCA
GAGTAGGGAAGCTCAGGCTACAAATATCAATAAGCTCAAGAATCAGTCTTCTTCTGAGCCCAACTCTAGTAGAAATGTCGTACAGATAGCAGGCCAGTCTCAATCTCTCT
CAGTTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATCGCCCGGACTCGAACCGGAGACCTTCAGTGTAAAGTCGGATATTATCATAAGCCACCTTGCAAAACTGCTTCTATCTTCCATCTTCAGTGGGAAAATCGTTTA
TCCGAGAGCGAAGCAGAGAGATGCTCGATTCCCGGTCTCTTCACTGCCGTTTCATCACGATTTGGCCGTCAGACCAATGGGGTTTCCTGTTTTTGCCATGAAGAGGTCTG
GGAAAGGCGGCATTGGCCTCACTGAGCAGAGTGATTCCGACATTGAGTTCGATGAATTTTTCGATGAGGATGAGGATGATTTTCAGGAGGAGGATGAGGATGAGATTCTT
TTGCCGTTAAAGAATACGAGAGAGTGGCATGCGGCGAGGCCTCGTGGATTTGGAGAAGGGAAGGAGTATGACACCTCAATTGAAGACAAATTGCTACAAGAAATGGAGCA
GAGTAGGGAAGCTCAGGCTACAAATATCAATAAGCTCAAGAATCAGTCTTCTTCTGAGCCCAACTCTAGTAGAAATGTCGTACAGATAGCAGGCCAGTCTCAATCTCTCT
CAGTTTTTTAG
Protein sequenceShow/hide protein sequence
MASPGLEPETFSVKSDIIISHLAKLLLSSIFSGKIVYPRAKQRDARFPVSSLPFHHDLAVRPMGFPVFAMKRSGKGGIGLTEQSDSDIEFDEFFDEDEDDFQEEDEDEIL
LPLKNTREWHAARPRGFGEGKEYDTSIEDKLLQEMEQSREAQATNINKLKNQSSSEPNSSRNVVQIAGQSQSLSVF