; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G017380 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G017380
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionReticulon family protein
Genome locationchr02:23087119..23094133
RNA-Seq ExpressionLsi02G017380
SyntenyLsi02G017380
Gene Ontology termsGO:0055085 - transmembrane transport (biological process)
GO:0005789 - endoplasmic reticulum membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR003388 - Reticulon
IPR044177 - Reticulon-like protein B22/B23


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040534.1 reticulon-like protein B23 isoform X1 [Cucumis melo var. makuwa]2.1e-2891.14Show/hide
Query:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYTVELSI
        M + VPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT   S+
Subjt:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYTVELSI
XP_008465702.1 PREDICTED: reticulon-like protein B23 isoform X1 [Cucumis melo]3.3e-2977.89Show/hide
Query:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYTVELSIFTGVQLFLDIEFFLAC
        M + VPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT E      +++  ++ + L C
Subjt:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYTVELSIFTGVQLFLDIEFFLAC
XP_008465703.1 PREDICTED: reticulon-like protein B22 isoform X2 [Cucumis melo]2.8e-2895.95Show/hide
Query:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT
        M + VPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT
Subjt:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT
XP_011655303.1 reticulon-like protein B22 [Cucumis sativus]3.7e-2894.59Show/hide
Query:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT
        M + VPVDPLEWQ+SQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT
Subjt:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT
XP_038889154.1 reticulon-like protein B22 [Benincasa hispida]3.7e-2894.59Show/hide
Query:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT
        M + VPVDPLEWQISQDTANSM+AWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT
Subjt:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT
TrEMBL top hitse value%identityAlignment
A0A0A0KQM7 Reticulon domain-containing protein1.8e-2894.59Show/hide
Query:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT
        M + VPVDPLEWQ+SQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT
Subjt:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT
A0A1S3CPH6 reticulon-like protein B22 isoform X21.4e-2895.95Show/hide
Query:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT
        M + VPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT
Subjt:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT
A0A1S3CQY5 reticulon-like protein B23 isoform X11.6e-2977.89Show/hide
Query:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYTVELSIFTGVQLFLDIEFFLAC
        M + VPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT E      +++  ++ + L C
Subjt:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYTVELSIFTGVQLFLDIEFFLAC
A0A5D3C5B3 Reticulon-like protein B23 isoform X11.0e-2891.14Show/hide
Query:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYTVELSI
        M + VPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYT   S+
Subjt:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYTVELSI
A0A6J1ICJ8 reticulon-like protein B23 isoform X21.5e-2792.11Show/hide
Query:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYTVE
        M + VPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKV+V LYALSVLGRLVSGVTVAYT E
Subjt:  MLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYTVE
SwissProt top hitse value%identityAlignment
P0C941 Reticulon-like protein B231.1e-2478.87Show/hide
Query:  LGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAY
        + VPVDPLEWQISQDTA +++A LANT+GAAESVLRVAATGHDKRLFVKVV+CLY L+ LGR++SGVT+AY
Subjt:  LGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAY
Q8GWH5 Reticulon-like protein B223.9e-2576.62Show/hide
Query:  LMPMMLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAY
        L   + + VPVDPLEWQISQDTA++++A LANT+GAAE VLRVAATGHDKRLFVKVV+CLY LS LGRL+SGVTVAY
Subjt:  LMPMMLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAY
Arabidopsis top hitse value%identityAlignment
AT1G16825.1 Reticulon family protein8.1e-2678.87Show/hide
Query:  LGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAY
        + VPVDPLEWQISQDTA +++A LANT+GAAESVLRVAATGHDKRLFVKVV+CLY L+ LGR++SGVT+AY
Subjt:  LGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAY
AT1G78895.1 Reticulon family protein2.8e-2676.62Show/hide
Query:  LMPMMLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAY
        L   + + VPVDPLEWQISQDTA++++A LANT+GAAE VLRVAATGHDKRLFVKVV+CLY LS LGRL+SGVTVAY
Subjt:  LMPMMLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCATTATCCCGTTCCTTTGATGCCTATGATGCTTCTAGGGGTACCAGTGGACCCTCTTGAGTGGCAAATATCGCAGGATACTGCTAATAGTATGATTGCTTGGTT
AGCCAATACCATAGGTGCGGCTGAGTCTGTTCTGAGGGTGGCAGCAACAGGGCATGATAAGAGGCTTTTTGTTAAGGTCGTTGTTTGCCTTTACGCTCTCTCAGTGCTTG
GAAGATTGGTTTCAGGTGTTACAGTTGCCTACACTGTTGAGTTGAGTATCTTCACAGGAGTCCAGTTGTTTCTTGATATTGAATTCTTCCTCGCATGTGAAACAAATCCA
ATAATGTATCCAACGAAGGCTCCAAGAACCAAAATACTTGCTCCCATCACATACCAGGAGAATGAAAATTCTAGCATCTCGTTCCTGGTCGTCGAGTTTGCAATACTACT
GTTGCTGAATTTTGCACCAACTCCACCATTTAGAACTTGTCCCGACGCCAAAATCTCGACAGAATCCAAACAATCTGGTGTAACCGAATTCGCCTCCACGGTACATCGAC
CGCTTTGGTTGTGGGAAGATCGGGTCATCTGGGTGGTTTGGTCTCGGCTCCCAGATTGGTTGCCAATCTTGTCCAGCCATTCCGATGACGAGATGGACGGCATCATGAAT
AAAACCAGGATCTCTCCAGCCAATGCTGTCATTAGCAGGGGAATCGCACATATGCTCCCTCTCATACCTCTCAACACGCGCCACAACAATCTGATCAAGCTTCTCCTTCT
TTTCCCCATATCTCACATACCTTTCCGATCCATCCTCCGTCACGAACATCACTCTCATTTCGTCATCGTGATCCGTGAACGCCAGATGGATCTGCTCCGGGCCGCTGCCG
GTGGAGAATCGGAGCTCCTCCGAGGCCGCGAGAAGGTGGGCCGTGCCGGGAAGAGGGTTGTGGTCGTGGTCATGATGCTTGTCGTCGATCTCCGATTCGGTCCACCGGAA
AATCCTGAAGGAGTAATTGGATCGGAGGTTGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCATTATCCCGTTCCTTTGATGCCTATGATGCTTCTAGGGGTACCAGTGGACCCTCTTGAGTGGCAAATATCGCAGGATACTGCTAATAGTATGATTGCTTGGTT
AGCCAATACCATAGGTGCGGCTGAGTCTGTTCTGAGGGTGGCAGCAACAGGGCATGATAAGAGGCTTTTTGTTAAGGTCGTTGTTTGCCTTTACGCTCTCTCAGTGCTTG
GAAGATTGGTTTCAGGTGTTACAGTTGCCTACACTGTTGAGTTGAGTATCTTCACAGGAGTCCAGTTGTTTCTTGATATTGAATTCTTCCTCGCATGTGAAACAAATCCA
ATAATGTATCCAACGAAGGCTCCAAGAACCAAAATACTTGCTCCCATCACATACCAGGAGAATGAAAATTCTAGCATCTCGTTCCTGGTCGTCGAGTTTGCAATACTACT
GTTGCTGAATTTTGCACCAACTCCACCATTTAGAACTTGTCCCGACGCCAAAATCTCGACAGAATCCAAACAATCTGGTGTAACCGAATTCGCCTCCACGGTACATCGAC
CGCTTTGGTTGTGGGAAGATCGGGTCATCTGGGTGGTTTGGTCTCGGCTCCCAGATTGGTTGCCAATCTTGTCCAGCCATTCCGATGACGAGATGGACGGCATCATGAAT
AAAACCAGGATCTCTCCAGCCAATGCTGTCATTAGCAGGGGAATCGCACATATGCTCCCTCTCATACCTCTCAACACGCGCCACAACAATCTGATCAAGCTTCTCCTTCT
TTTCCCCATATCTCACATACCTTTCCGATCCATCCTCCGTCACGAACATCACTCTCATTTCGTCATCGTGATCCGTGAACGCCAGATGGATCTGCTCCGGGCCGCTGCCG
GTGGAGAATCGGAGCTCCTCCGAGGCCGCGAGAAGGTGGGCCGTGCCGGGAAGAGGGTTGTGGTCGTGGTCATGATGCTTGTCGTCGATCTCCGATTCGGTCCACCGGAA
AATCCTGAAGGAGTAATTGGATCGGAGGTTGACTAA
Protein sequenceShow/hide protein sequence
MSHYPVPLMPMMLLGVPVDPLEWQISQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVKVVVCLYALSVLGRLVSGVTVAYTVELSIFTGVQLFLDIEFFLACETNP
IMYPTKAPRTKILAPITYQENENSSISFLVVEFAILLLLNFAPTPPFRTCPDAKISTESKQSGVTEFASTVHRPLWLWEDRVIWVVWSRLPDWLPILSSHSDDEMDGIMN
KTRISPANAVISRGIAHMLPLIPLNTRHNNLIKLLLLFPISHIPFRSILRHEHHSHFVIVIRERQMDLLRAAAGGESELLRGREKVGRAGKRVVVVVMMLVVDLRFGPPE
NPEGVIGSEVD