; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G017710 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G017710
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr02:23502786..23507237
RNA-Seq ExpressionLsi02G017710
SyntenyLsi02G017710
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7828026.1 rhamnogalacturonan I rhamnosyltransferase 1-like [Senna tora]2.0e-1847.5Show/hide
Query:  NTLEQGAEQINPPKHSGIRFQGKNIEVLSPTRVVLEIFSNQKQSNRNPWFQSTAGIANLGISNRVGIYPESFGNLQNDLILG----GGESKAFGENCRLH
        N+  Q  +   PP +SGI    KN EV+ P R+V    S+Q+QS+R+P FQS AGI N G  NRVG+ P+  G+LQNDL+ G    G E++A   +  L 
Subjt:  NTLEQGAEQINPPKHSGIRFQGKNIEVLSPTRVVLEIFSNQKQSNRNPWFQSTAGIANLGISNRVGIYPESFGNLQNDLILG----GGESKAFGENCRLH

Query:  VSLGGDDTFLAKPLPESVNG
          LG DD F+ KPLPE VNG
Subjt:  VSLGGDDTFLAKPLPESVNG
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAGATTCTAGAAGGAATGCATCTGTGCCTCCGAGTGCTAGCAGCCGCAGGAACGGAAGCATTGCAGGCGGAAAAGGACGCTCCAAAACAATGTCAAAATAAGCA
GTCTCACCAAGACCATTTGTCTCAGCAATATCTAGCTTGTCATCAAAGAAAAGGTCTGACTCTGTTTTGGAATAAAATCTTCAACAAGCGAAAACTCCAACCATCAGTCA
TGTCAGACAGGCACATAAACGTAGAAATTAGTACTTCACCTGCTCACCAGCCTTCACAGGAATTGGGGACCGGAGAGAGAATAGGATATCCCATGAGAAGAGACCTGCCG
TTGAAAATAAACGAGAGACAAACCTTGGAGTTCTGCAAGCTCCTCTTCAGACCTGCACTGAAACATCAAAACAAGCACTCCATCAACTCCATAATTATGAAAAACACATT
AGAACAAGGAGCAGAGCAGATTAACCCACCAAAACACAGTGGAATCCGTTTCCAGGGGAAGAATATCGAGGTATTGTCGCCAACGCGAGTCGTCCTTGAGATTTTCTCTA
ATCAGAAACAGAGCAACAGAAATCCATGGTTTCAATCCACTGCAGGCATTGCCAATCTCGGAATCAGCAACCGCGTCGGGATTTATCCAGAATCGTTTGGGAACCTCCAA
AACGACCTCATTCTTGGTGGTGGCGAGTCCAAGGCCTTCGGAGAAAATTGCAGGCTTCACGTGAGTCTTGGAGGAGACGACACCTTCCTTGCGAAGCCATTGCCAGAAAG
TGTGAACGGCAACGATGGGTCTAACTCTGGAGAGGCGAGGGAAGTTACAGAGAGGCGTGGCTTGGGAACGAGCAACGGCCGCTTTGGAGTGCGCGGAAAGGAAAGGAAAT
TAGAGGATGAAGAAGCTAAGGCCATGGCCATGGGAATTGGAATTGGAGTCGCCATTTTCGGGGGGTTTCAAGCTTCGAGTATGCCATTGGAAAAGAAGTGGATAAAAAAA
TTTGAAAATTATGCACACGTGGGATTCATACGTGGCCTGTATTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAGATTCTAGAAGGAATGCATCTGTGCCTCCGAGTGCTAGCAGCCGCAGGAACGGAAGCATTGCAGGCGGAAAAGGACGCTCCAAAACAATGTCAAAATAAGCA
GTCTCACCAAGACCATTTGTCTCAGCAATATCTAGCTTGTCATCAAAGAAAAGGTCTGACTCTGTTTTGGAATAAAATCTTCAACAAGCGAAAACTCCAACCATCAGTCA
TGTCAGACAGGCACATAAACGTAGAAATTAGTACTTCACCTGCTCACCAGCCTTCACAGGAATTGGGGACCGGAGAGAGAATAGGATATCCCATGAGAAGAGACCTGCCG
TTGAAAATAAACGAGAGACAAACCTTGGAGTTCTGCAAGCTCCTCTTCAGACCTGCACTGAAACATCAAAACAAGCACTCCATCAACTCCATAATTATGAAAAACACATT
AGAACAAGGAGCAGAGCAGATTAACCCACCAAAACACAGTGGAATCCGTTTCCAGGGGAAGAATATCGAGGTATTGTCGCCAACGCGAGTCGTCCTTGAGATTTTCTCTA
ATCAGAAACAGAGCAACAGAAATCCATGGTTTCAATCCACTGCAGGCATTGCCAATCTCGGAATCAGCAACCGCGTCGGGATTTATCCAGAATCGTTTGGGAACCTCCAA
AACGACCTCATTCTTGGTGGTGGCGAGTCCAAGGCCTTCGGAGAAAATTGCAGGCTTCACGTGAGTCTTGGAGGAGACGACACCTTCCTTGCGAAGCCATTGCCAGAAAG
TGTGAACGGCAACGATGGGTCTAACTCTGGAGAGGCGAGGGAAGTTACAGAGAGGCGTGGCTTGGGAACGAGCAACGGCCGCTTTGGAGTGCGCGGAAAGGAAAGGAAAT
TAGAGGATGAAGAAGCTAAGGCCATGGCCATGGGAATTGGAATTGGAGTCGCCATTTTCGGGGGGTTTCAAGCTTCGAGTATGCCATTGGAAAAGAAGTGGATAAAAAAA
TTTGAAAATTATGCACACGTGGGATTCATACGTGGCCTGTATTTGTGA
Protein sequenceShow/hide protein sequence
MKEILEGMHLCLRVLAAAGTEALQAEKDAPKQCQNKQSHQDHLSQQYLACHQRKGLTLFWNKIFNKRKLQPSVMSDRHINVEISTSPAHQPSQELGTGERIGYPMRRDLP
LKINERQTLEFCKLLFRPALKHQNKHSINSIIMKNTLEQGAEQINPPKHSGIRFQGKNIEVLSPTRVVLEIFSNQKQSNRNPWFQSTAGIANLGISNRVGIYPESFGNLQ
NDLILGGGESKAFGENCRLHVSLGGDDTFLAKPLPESVNGNDGSNSGEAREVTERRGLGTSNGRFGVRGKERKLEDEEAKAMAMGIGIGVAIFGGFQASSMPLEKKWIKK
FENYAHVGFIRGLYL