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Lsi02G017930 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G017930
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description2'-5' RNA ligase
Genome locationchr02:23747078..23750105
RNA-Seq ExpressionLsi02G017930
SyntenyLsi02G017930
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER45943.1 2'-5' RNA ligase [Striga asiatica]6.3e-1056.72Show/hide
Query:  RSCENMLWKTGDREARIARWAPTLPSEALIMISVWMLSFNIRPNEIRALEFDRCCVSPSAQMEEVKE
        RS ENML  TG+R AR ARWA T PSEALI +SVWM S ++RP  +RA+  D  CV P  Q+E   E
Subjt:  RSCENMLWKTGDREARIARWAPTLPSEALIMISVWMLSFNIRPNEIRALEFDRCCVSPSAQMEEVKE
TrEMBL top hitse value%identityAlignment
A0A5A7QKP2 2'-5' RNA ligase3.1e-1056.72Show/hide
Query:  RSCENMLWKTGDREARIARWAPTLPSEALIMISVWMLSFNIRPNEIRALEFDRCCVSPSAQMEEVKE
        RS ENML  TG+R AR ARWA T PSEALI +SVWM S ++RP  +RA+  D  CV P  Q+E   E
Subjt:  RSCENMLWKTGDREARIARWAPTLPSEALIMISVWMLSFNIRPNEIRALEFDRCCVSPSAQMEEVKE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGATGCGAATAGTGGGGCTTTTCTTGATGGTTTCTTTAATAGCTCGCAGAATTTGGTTGATGCGATCACTATTATCAAGGTCATGTGAAAACATGCTGTGGAAAAC
AGGTGATCGTGAAGCAAGAATAGCACGATGGGCCCCAACACTTCCATCAGAAGCATTGATTATGATATCGGTATGGATGCTTTCCTTCAACATTCGGCCCAATGAAATAA
GAGCTCTTGAATTCGATCGTTGTTGTGTCAGTCCATCTGCCCAGATGGAGGAAGTAAAGGAGGAGAATGAAATTACCTGGATGAGTCAAAGCCTTCCGATCCCCTGCAGA
GGAGACCACTCGGATGATGAAAGATACAATCGGAGGATTATCCCTTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGATGCGAATAGTGGGGCTTTTCTTGATGGTTTCTTTAATAGCTCGCAGAATTTGGTTGATGCGATCACTATTATCAAGGTCATGTGAAAACATGCTGTGGAAAAC
AGGTGATCGTGAAGCAAGAATAGCACGATGGGCCCCAACACTTCCATCAGAAGCATTGATTATGATATCGGTATGGATGCTTTCCTTCAACATTCGGCCCAATGAAATAA
GAGCTCTTGAATTCGATCGTTGTTGTGTCAGTCCATCTGCCCAGATGGAGGAAGTAAAGGAGGAGAATGAAATTACCTGGATGAGTCAAAGCCTTCCGATCCCCTGCAGA
GGAGACCACTCGGATGATGAAAGATACAATCGGAGGATTATCCCTTGTTAAGCTAGATATTTCTGGGTGCAGGAAGCAAGATTTTCGATCCTCCATTGGGCAAGACGGGA
TGTGGTTTCTACCCTGTAAGCTGAGTCACTCATCCTAGCAAACGCAAGGGCTGCTGTGATTTCATGGATGCAACCGAAGATTCCATCGAGGAAGTGCTCTCCGGACTTTC
CCAGGTTGGCAAATTCTGC
Protein sequenceShow/hide protein sequence
MLMRIVGLFLMVSLIARRIWLMRSLLSRSCENMLWKTGDREARIARWAPTLPSEALIMISVWMLSFNIRPNEIRALEFDRCCVSPSAQMEEVKEENEITWMSQSLPIPCR
GDHSDDERYNRRIIPC