; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G018130 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G018130
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPoly(A)-specific ribonuclease
Genome locationchr02:23925516..23928776
RNA-Seq ExpressionLsi02G018130
SyntenyLsi02G018130
Gene Ontology termsGO:0043928 - exonucleolytic catabolism of deadenylated mRNA (biological process)
GO:0000932 - P-body (cellular component)
GO:0030015 - CCR4-NOT core complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domainsIPR006941 - Ribonuclease CAF1
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044544.1 putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa]1.2e-8265.59Show/hide
Query:  MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSS
        M+ +RQVW HNL QEL +L+  L KFPV+A DTEFPGFLRST R AP E  Y+DLKFN+NHLK LQLGLTL DEN +VG++W F FSDFDE  D  SP+S
Subjt:  MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSS

Query:  IQFLKN-RGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGL
        IQ+LKN +GF+F K RK+GIPS  FRRAFLP+  SNRITKW+TFHG YDVAYLL LMMI+ MPES++EFA  AQR LGTV DLKHM R    L NGELGL
Subjt:  IQFLKN-RGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGL

Query:  EKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFDGYL
        ++LA+LLNV  N    + GSDSLL A AYAK+K   K S++  DG+L
Subjt:  EKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFDGYL

KAE8649090.1 hypothetical protein Csa_014788 [Cucumis sativus]3.3e-8063.93Show/hide
Query:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQF
        +RQVW HNL QELA+L+  L KFPV+  DTEFPGFLRSTPR AP E  Y+DLKFNVNHLK LQLGLTL DEN +VG++W F FSDFDE  D+ SP+S+Q+
Subjt:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQF

Query:  LK-NRGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGLEKL
        LK N+GF+F K RK+GIPS  FRRAFLP+  SNRITKW+TFHG YDVAYLL LM+IK MPES++EFA  AQR LGTV DLK+M  +  +L  GELGL++L
Subjt:  LK-NRGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGLEKL

Query:  AKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFDGYL
        A+LL+V  N      GSDSLL A AY K+K + K+S+++  G+L
Subjt:  AKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFDGYL

XP_004151393.1 putative CCR4-associated factor 1 homolog 8 [Cucumis sativus]3.3e-8063.93Show/hide
Query:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQF
        +RQVW HNL QELA+L+  L KFPV+  DTEFPGFLRSTPR AP E  Y+DLKFNVNHLK LQLGLTL DEN +VG++W F FSDFDE  D+ SP+S+Q+
Subjt:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQF

Query:  LK-NRGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGLEKL
        LK N+GF+F K RK+GIPS  FRRAFLP+  SNRITKW+TFHG YDVAYLL LM+IK MPES++EFA  AQR LGTV DLK+M  +  +L  GELGL++L
Subjt:  LK-NRGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGLEKL

Query:  AKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFDGYL
        A+LL+V  N      GSDSLL A AY K+K + K+S+++  G+L
Subjt:  AKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFDGYL

XP_008454486.1 PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo]1.4e-8365.59Show/hide
Query:  MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSS
        M+ +R+VW HN  QELA+L+  L KFPV+A DTEFPGFLRSTPR AP E  Y+DLKFN+NHLK LQLGLTL DEN +VG++W F FSDFDE  D  SP+S
Subjt:  MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSS

Query:  IQFLKN-RGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGL
        IQ+LKN +GF+F K RK+GIPS  FRRAFLP+  SNRITKW+TFHG YDVAYLL LMMI+ MPES++EFA  AQR LGTV DLKHM R    L NGELGL
Subjt:  IQFLKN-RGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGL

Query:  EKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFDGYL
        ++LA+LLNV  N    + GSDSLL A AYAK+K   K S++  DG+L
Subjt:  EKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFDGYL

XP_038890962.1 putative CCR4-associated factor 1 homolog 8 [Benincasa hispida]3.6e-8765.99Show/hide
Query:  MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSS
        M ++RQVWSHNL++ELA+ +  LS+FPV+  DTEFPGF+RSTPR AP E  Y+DLKFN+NHLK LQLGLTL DENGNVGMTWEF FSDFDE  D+ +P+S
Subjt:  MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSS

Query:  IQFLKNRGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGLE
        IQFLKN+G DF K R+EGI S  F+ AFLP+ CSNRI KWVTFHG YDVAYLL LM+IK MPESV+EFA  A+  LGTV DLK++ R    L NGELGL+
Subjt:  IQFLKNRGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGLE

Query:  KLAKLLNVERNGIAHH-AGSDSLLTASAYAKIKNVFKISTKHFDGYL
        KLAKLLN+  +   HH AG DSLL ASAYAK+K + + S+++ DG+L
Subjt:  KLAKLLNVERNGIAHH-AGSDSLLTASAYAKIKNVFKISTKHFDGYL

TrEMBL top hitse value%identityAlignment
A0A0A0KTU4 Poly(A)-specific ribonuclease1.6e-8063.93Show/hide
Query:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQF
        +RQVW HNL QELA+L+  L KFPV+  DTEFPGFLRSTPR AP E  Y+DLKFNVNHLK LQLGLTL DEN +VG++W F FSDFDE  D+ SP+S+Q+
Subjt:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQF

Query:  LK-NRGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGLEKL
        LK N+GF+F K RK+GIPS  FRRAFLP+  SNRITKW+TFHG YDVAYLL LM+IK MPES++EFA  AQR LGTV DLK+M  +  +L  GELGL++L
Subjt:  LK-NRGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGLEKL

Query:  AKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFDGYL
        A+LL+V  N      GSDSLL A AY K+K + K+S+++  G+L
Subjt:  AKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFDGYL

A0A1S3BY95 Poly(A)-specific ribonuclease6.9e-8465.59Show/hide
Query:  MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSS
        M+ +R+VW HN  QELA+L+  L KFPV+A DTEFPGFLRSTPR AP E  Y+DLKFN+NHLK LQLGLTL DEN +VG++W F FSDFDE  D  SP+S
Subjt:  MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSS

Query:  IQFLKN-RGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGL
        IQ+LKN +GF+F K RK+GIPS  FRRAFLP+  SNRITKW+TFHG YDVAYLL LMMI+ MPES++EFA  AQR LGTV DLKHM R    L NGELGL
Subjt:  IQFLKN-RGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGL

Query:  EKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFDGYL
        ++LA+LLNV  N    + GSDSLL A AYAK+K   K S++  DG+L
Subjt:  EKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFDGYL

A0A5A7T5A7 Putative CCR4-associated factor 1-like protein 87.0e-7663.71Show/hide
Query:  MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSS
        M+ +RQVW HNL QELA+L+  L K P++  DTEF GFLRSTPR AP E  Y+DLKFN+NHLK LQLGLTL D+N +VG++W F FSDFDE  D  SP+S
Subjt:  MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSS

Query:  IQFLK-NRGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGL
        IQ+LK N+ F+F K RK  IPS  FRRAFLP+  SNRITKW+TFHG YDVAYLL LMMI+ MPES++EFA  AQR LGTV DLKHM      L NGELGL
Subjt:  IQFLK-NRGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGL

Query:  EKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFK
        ++LA+LLNV  N    + GSDSLL A AY K+K + K
Subjt:  EKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFK

A0A5A7TN62 Poly(A)-specific ribonuclease5.9e-8365.59Show/hide
Query:  MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSS
        M+ +RQVW HNL QEL +L+  L KFPV+A DTEFPGFLRST R AP E  Y+DLKFN+NHLK LQLGLTL DEN +VG++W F FSDFDE  D  SP+S
Subjt:  MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSS

Query:  IQFLKN-RGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGL
        IQ+LKN +GF+F K RK+GIPS  FRRAFLP+  SNRITKW+TFHG YDVAYLL LMMI+ MPES++EFA  AQR LGTV DLKHM R    L NGELGL
Subjt:  IQFLKN-RGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGL

Query:  EKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFDGYL
        ++LA+LLNV  N    + GSDSLL A AYAK+K   K S++  DG+L
Subjt:  EKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFDGYL

A0A5D3D333 Poly(A)-specific ribonuclease6.9e-8465.59Show/hide
Query:  MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSS
        M+ +R+VW HN  QELA+L+  L KFPV+A DTEFPGFLRSTPR AP E  Y+DLKFN+NHLK LQLGLTL DEN +VG++W F FSDFDE  D  SP+S
Subjt:  MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSS

Query:  IQFLKN-RGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGL
        IQ+LKN +GF+F K RK+GIPS  FRRAFLP+  SNRITKW+TFHG YDVAYLL LMMI+ MPES++EFA  AQR LGTV DLKHM R    L NGELGL
Subjt:  IQFLKN-RGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGL

Query:  EKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFDGYL
        ++LA+LLNV  N    + GSDSLL A AYAK+K   K S++  DG+L
Subjt:  EKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFDGYL

SwissProt top hitse value%identityAlignment
Q9LXM4 Putative CCR4-associated factor 1 homolog 85.2e-4443.95Show/hide
Query:  LAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQFLKNRGFDFNKLR
        +++++ CL  +  +A DTEFP  LR T + A  E+ Y D+ F+V+  K +QLGLTL D NG +G TWE NFSDF   DD  +  SI+FL+  G D  K+R
Subjt:  LAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQFLKNRGFDFNKLR

Query:  KEGIP-SGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIA
        +EGI   G F   F  L  + R   WVTFHG YD+AYLL     + +P +   F+    R+LG+V+DLK MA     L +  LGLE LA    + R G A
Subjt:  KEGIP-SGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIA

Query:  HHAGSDSLLTASAYAKIKNVFKI
        HHAGS++ LTA  +AK+ + F +
Subjt:  HHAGSDSLLTASAYAKIKNVFKI

Q9S9P2 Probable CCR4-associated factor 1 homolog 21.1e-4139.11Show/hide
Query:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--------PRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNV-------GMTWEFNFSD
        IR+VW+HNL QE+A+++  +  FP VA DTEFPG +  T        P     E  Y+ LK NVN LK +QLGLTL+DE GN+          W+FNF +
Subjt:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--------PRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNV-------GMTWEFNFSD

Query:  FDETDDIHSPSSIQFLKNRGFDFNKLRKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMAR
        F+   D+ +  SI+ L+    D  K  + G+ +  F    +      N    WVTFH  YD  YLL L+  K +PE + +F  + ++    V+D+K++  
Subjt:  FDETDDIHSPSSIQFLKNRGFDFNKLRKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMAR

Query:  YSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVF
        +   L     GLEK+A+LL V+R GI+H AGSDSLLT   + K+K  F
Subjt:  YSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVF

Q9SAI2 Probable CCR4-associated factor 1 homolog 61.4e-4140.32Show/hide
Query:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--PRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVG-------MTWEFNFSDFDETDD
        IR+VW+ NL +E+ ++   +  FP VA DTEFPG +        +  +  YE LK NVN LK +QLGLT ++E GN+          W+FNF +FD   D
Subjt:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--PRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVG-------MTWEFNFSDFDETDD

Query:  IHSPSSIQFLKNRGFDFNKLRKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQ
        I +  SI+ LK  G D  K   +GI S  F    +      N    WVTFH  YD  YLL L+  + +P+S  +F         TV+D+KH+ ++ N L 
Subjt:  IHSPSSIQFLKNRGFDFNKLRKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQ

Query:  NGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKH
            GL KLA+LL VER GI H AGSDSLLT+  + K+K  F +   H
Subjt:  NGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKH

Q9SHJ0 Probable CCR4-associated factor 1 homolog 14.7e-4540.42Show/hide
Query:  IIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQ
        + R+VW  N+ +E+A +  CL +FP++AFDTE+PG +  T  D+  ++ Y  +K NV + K +Q G TL +  G +G  WE NFS+F +  D  +  SI+
Subjt:  IIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQ

Query:  FLKNRGFDFNKLRKEGIPSGVFRRAFLP----LCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELG
        FL+  G D  K+R EG+   +F   F P    +  S +  ++VTF G YD AY L+++    +PE+  EFA +  ++ G V+D K MA +   L    LG
Subjt:  FLKNRGFDFNKLRKEGIPSGVFRRAFLP----LCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELG

Query:  LEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKIS
        L KLA+LL + R G AHHAGSDSL+TA  + K+K+V++ S
Subjt:  LEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKIS

Q9SKZ2 Probable CCR4-associated factor 1 homolog 78.3e-4240.78Show/hide
Query:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--PRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVG--------MTWEFNFSDFDETD
        IR+VW+ NL  E+A++   +  FP VA DTEFPG +           E  YE LK NVN LK +QLGLT +DE GN+           W+FNF +FD   
Subjt:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--PRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVG--------MTWEFNFSDFDETD

Query:  DIHSPSSIQFLKNRGFDFNKLRKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKL
        DI++  SI+ L+  G DF K  + GI S  F    +      N    WVTFH  YD  YLL L+  + +PE+   F          V+D+KH+ ++ N L
Subjt:  DIHSPSSIQFLKNRGFDFNKLRKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKL

Query:  QNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKI-KNVFKISTKHFDGYL
             GL KLA+LL+VER GI H AGSDSLLT+  + K+ +N F  S + + G L
Subjt:  QNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKI-KNVFKISTKHFDGYL

Arabidopsis top hitse value%identityAlignment
AT1G06450.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.3e-4640.42Show/hide
Query:  IIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQ
        + R+VW  N+ +E+A +  CL +FP++AFDTE+PG +  T  D+  ++ Y  +K NV + K +Q G TL +  G +G  WE NFS+F +  D  +  SI+
Subjt:  IIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQ

Query:  FLKNRGFDFNKLRKEGIPSGVFRRAFLP----LCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELG
        FL+  G D  K+R EG+   +F   F P    +  S +  ++VTF G YD AY L+++    +PE+  EFA +  ++ G V+D K MA +   L    LG
Subjt:  FLKNRGFDFNKLRKEGIPSGVFRRAFLP----LCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELG

Query:  LEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKIS
        L KLA+LL + R G AHHAGSDSL+TA  + K+K+V++ S
Subjt:  LEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKIS

AT1G15920.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.7e-4339.11Show/hide
Query:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--------PRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNV-------GMTWEFNFSD
        IR+VW+HNL QE+A+++  +  FP VA DTEFPG +  T        P     E  Y+ LK NVN LK +QLGLTL+DE GN+          W+FNF +
Subjt:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--------PRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNV-------GMTWEFNFSD

Query:  FDETDDIHSPSSIQFLKNRGFDFNKLRKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMAR
        F+   D+ +  SI+ L+    D  K  + G+ +  F    +      N    WVTFH  YD  YLL L+  K +PE + +F  + ++    V+D+K++  
Subjt:  FDETDDIHSPSSIQFLKNRGFDFNKLRKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMAR

Query:  YSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVF
        +   L     GLEK+A+LL V+R GI+H AGSDSLLT   + K+K  F
Subjt:  YSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVF

AT1G15920.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.7e-4339.11Show/hide
Query:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--------PRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNV-------GMTWEFNFSD
        IR+VW+HNL QE+A+++  +  FP VA DTEFPG +  T        P     E  Y+ LK NVN LK +QLGLTL+DE GN+          W+FNF +
Subjt:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--------PRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNV-------GMTWEFNFSD

Query:  FDETDDIHSPSSIQFLKNRGFDFNKLRKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMAR
        F+   D+ +  SI+ L+    D  K  + G+ +  F    +      N    WVTFH  YD  YLL L+  K +PE + +F  + ++    V+D+K++  
Subjt:  FDETDDIHSPSSIQFLKNRGFDFNKLRKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMAR

Query:  YSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVF
        +   L     GLEK+A+LL V+R GI+H AGSDSLLT   + K+K  F
Subjt:  YSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVF

AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.9e-4340.78Show/hide
Query:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--PRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVG--------MTWEFNFSDFDETD
        IR+VW+ NL  E+A++   +  FP VA DTEFPG +           E  YE LK NVN LK +QLGLT +DE GN+           W+FNF +FD   
Subjt:  IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--PRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVG--------MTWEFNFSDFDETD

Query:  DIHSPSSIQFLKNRGFDFNKLRKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKL
        DI++  SI+ L+  G DF K  + GI S  F    +      N    WVTFH  YD  YLL L+  + +PE+   F          V+D+KH+ ++ N L
Subjt:  DIHSPSSIQFLKNRGFDFNKLRKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKL

Query:  QNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKI-KNVFKISTKHFDGYL
             GL KLA+LL+VER GI H AGSDSLLT+  + K+ +N F  S + + G L
Subjt:  QNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKI-KNVFKISTKHFDGYL

AT3G44240.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.7e-4543.95Show/hide
Query:  LAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQFLKNRGFDFNKLR
        +++++ CL  +  +A DTEFP  LR T + A  E+ Y D+ F+V+  K +QLGLTL D NG +G TWE NFSDF   DD  +  SI+FL+  G D  K+R
Subjt:  LAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQFLKNRGFDFNKLR

Query:  KEGIP-SGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIA
        +EGI   G F   F  L  + R   WVTFHG YD+AYLL     + +P +   F+    R+LG+V+DLK MA     L +  LGLE LA    + R G A
Subjt:  KEGIP-SGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIA

Query:  HHAGSDSLLTASAYAKIKNVFKI
        HHAGS++ LTA  +AK+ + F +
Subjt:  HHAGSDSLLTASAYAKIKNVFKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATCATTCGACAAGTTTGGTCTCATAATTTGTTTCAAGAATTGGCCGTTCTCGACGGTTGTCTCTCGAAGTTTCCGGTGGTCGCTTTCGACACCGAGTTCCCCGG
CTTTCTCCGATCCACCCCAAGAGATGCTCCATTAGAACAAACCTACGAAGATTTAAAATTCAATGTGAATCACTTAAAGCCTCTTCAATTGGGTCTCACTTTAACCGACG
AGAATGGAAATGTCGGCATGACATGGGAGTTCAACTTCAGTGATTTTGATGAGACTGATGACATCCATAGTCCGTCATCTATACAGTTCTTGAAGAACAGAGGATTTGAT
TTCAACAAACTAAGAAAAGAAGGGATTCCATCTGGTGTATTCCGAAGGGCATTTTTACCCCTTTGTTGTAGTAATCGAATCACCAAATGGGTCACCTTCCACGGCTTCTA
CGACGTCGCTTACCTCCTCAACCTAATGATGATCAAATGCATGCCGGAGTCCGTCATGGAATTTGCCGCCAAAGCACAGCGTCTTCTCGGCACTGTTTTCGACCTCAAGC
ACATGGCTCGCTACAGCAACAAATTACAAAATGGCGAACTTGGGCTTGAAAAGTTAGCCAAGTTACTCAATGTGGAGCGTAACGGAATTGCCCATCATGCTGGTTCTGAT
AGCTTGTTGACGGCTTCTGCGTATGCAAAGATCAAGAACGTGTTCAAGATTTCGACAAAGCATTTTGATGGGTATCTATCTTTCAAAAGCTTCCTTGGGACCTCTAGTAT
TTGTGAGAAGCGCCTATCACTGGGCCACAAAACTAAAGGAACCTGTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGATCATTCGACAAGTTTGGTCTCATAATTTGTTTCAAGAATTGGCCGTTCTCGACGGTTGTCTCTCGAAGTTTCCGGTGGTCGCTTTCGACACCGAGTTCCCCGG
CTTTCTCCGATCCACCCCAAGAGATGCTCCATTAGAACAAACCTACGAAGATTTAAAATTCAATGTGAATCACTTAAAGCCTCTTCAATTGGGTCTCACTTTAACCGACG
AGAATGGAAATGTCGGCATGACATGGGAGTTCAACTTCAGTGATTTTGATGAGACTGATGACATCCATAGTCCGTCATCTATACAGTTCTTGAAGAACAGAGGATTTGAT
TTCAACAAACTAAGAAAAGAAGGGATTCCATCTGGTGTATTCCGAAGGGCATTTTTACCCCTTTGTTGTAGTAATCGAATCACCAAATGGGTCACCTTCCACGGCTTCTA
CGACGTCGCTTACCTCCTCAACCTAATGATGATCAAATGCATGCCGGAGTCCGTCATGGAATTTGCCGCCAAAGCACAGCGTCTTCTCGGCACTGTTTTCGACCTCAAGC
ACATGGCTCGCTACAGCAACAAATTACAAAATGGCGAACTTGGGCTTGAAAAGTTAGCCAAGTTACTCAATGTGGAGCGTAACGGAATTGCCCATCATGCTGGTTCTGAT
AGCTTGTTGACGGCTTCTGCGTATGCAAAGATCAAGAACGTGTTCAAGATTTCGACAAAGCATTTTGATGGGTATCTATCTTTCAAAAGCTTCCTTGGGACCTCTAGTAT
TTGTGAGAAGCGCCTATCACTGGGCCACAAAACTAAAGGAACCTGTGTTTGA
Protein sequenceShow/hide protein sequence
MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQFLKNRGFD
FNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSD
SLLTASAYAKIKNVFKISTKHFDGYLSFKSFLGTSSICEKRLSLGHKTKGTCV