; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G018350 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G018350
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNuclear transcription factor Y subunit B-3
Genome locationchr02:24144405..24145055
RNA-Seq ExpressionLsi02G018350
SyntenyLsi02G018350
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607751.1 hypothetical protein SDJN03_01093, partial [Cucurbita argyrosperma subsp. sororia]1.2e-6970.08Show/hide
Query:  MEKFTDHCSSLC----------SSSSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLTLL-LLLIPSTLFLAKKKSDSLQ--------ISAADHLFD
        MEKFTDHC+SLC          SSSS SSS  QSRLNV +VSTLLASICFLSLRFSPSFL+LL LLLIPS  FLA KKSDS Q        IS A HLFD
Subjt:  MEKFTDHCSSLC----------SSSSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLTLL-LLLIPSTLFLAKKKSDSLQ--------ISAADHLFD

Query:  QKPQTKAEEESAAQIGEEHSSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSSEDDDSLIEIPLLP---------NLNAIRNLETCL
        +KPQ   EE SAAQIGEE SSDD++SS      N G  S GDF SDLWM LDEL+RNLP S+DSSSEDDDSLIEIPLLP         N   +RNLETCL
Subjt:  QKPQTKAEEESAAQIGEEHSSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSSEDDDSLIEIPLLP---------NLNAIRNLETCL

Query:  PDLLPDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFSAVCN
        PDLLPDSVL+Q+GFVELLEEINEEDNLIEIDIS+GFNR S VCN
Subjt:  PDLLPDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFSAVCN

TYK07951.1 hypothetical protein E5676_scaffold265G00700 [Cucumis melo var. makuwa]6.0e-6975.23Show/hide
Query:  MEKFTDHCSSLCSSSSLSSSFTQSRLNVAIVSTLLASICFL-SLRFSPSFLT-LLLLLIPSTLFLAKKKSDSLQISAADHLFDQKPQTKAEEESAAQIGE
        MEKFT HCSSL SSSS    FTQSR N+ I STLLASI FL +LRFSPSF T LLLLL+P+TLFLA +KS SL      HLFD+K  T   +ESA  IGE
Subjt:  MEKFTDHCSSLCSSSSLSSSFTQSRLNVAIVSTLLASICFL-SLRFSPSFLT-LLLLLIPSTLFLAKKKSDSLQISAADHLFDQKPQTKAEEESAAQIGE

Query:  EHSSDDETS-SSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSS---EDDDSLIEIPLLPNLNAIRNLETCLPDLLPDSVLRQHGFVELLEEIN
          SSDDETS SSSS S+N+GGL SGDF SDLWM+LDEL+RNLP SED SS   +DDDSLIEIPLLPN N IRNLETCLP+LLPDSVLRQHGFVELLEEIN
Subjt:  EHSSDDETS-SSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSS---EDDDSLIEIPLLPNLNAIRNLETCLPDLLPDSVLRQHGFVELLEEIN

Query:  EEDNLIEIDISKGFNRFSAVCN
        EEDNLIEIDISKGFNRFS VCN
Subjt:  EEDNLIEIDISKGFNRFSAVCN

XP_022941469.1 uncharacterized protein LOC111446758 [Cucurbita moschata]1.6e-6970.66Show/hide
Query:  MEKFTDHCSSLC--------SSSSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLTLL-LLLIPSTLFLAKKKSDSLQ--------ISAADHLFDQK
        MEKFTDHC+SLC        SSSS SSS  QSRLNV +VSTLLASICFLSLRFSPSFL+LL LLLIPS  FLA KKSDS Q        IS A HLFD+K
Subjt:  MEKFTDHCSSLC--------SSSSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLTLL-LLLIPSTLFLAKKKSDSLQ--------ISAADHLFDQK

Query:  PQTKAEEESAAQIGEEHSSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSSEDDDSLIEIPLLP---------NLNAIRNLETCLPD
        PQ   EE SAAQIGEE SSDD++SS      N G  S GDF SDLWM LDEL RNLP S+DSSSEDDDSLIEIPLLP         N   +RNLETCLPD
Subjt:  PQTKAEEESAAQIGEEHSSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSSEDDDSLIEIPLLP---------NLNAIRNLETCLPD

Query:  LLPDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFSAVCN
        LLPDSVL+Q+GFVELLEEINEEDNLIEIDIS+GFNR S VCN
Subjt:  LLPDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFSAVCN

XP_022981598.1 uncharacterized protein LOC111480668 [Cucurbita maxima]1.3e-7172.57Show/hide
Query:  MEKFTDHCSSLCSS----SSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLTLLLLLIPSTLFLAKKKSDSLQ--------ISAADHLFDQKPQTKA
        MEKFTDHC+SLCSS    SS SSS  QSRLNV +VSTLLASICFLSLRFSPSFL+LLLLLIPS  FLA KKSDS Q        IS A HLFD+KPQ   
Subjt:  MEKFTDHCSSLCSS----SSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLTLLLLLIPSTLFLAKKKSDSLQ--------ISAADHLFDQKPQTKA

Query:  EEESAAQIGEEHSSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSSEDDDSLIEIPLLPNLNAI---------RNLETCLPDLLPDS
        EE SAAQIGEE SSDD++SS      N G  S GDF SDLWM LDEL+RNLP S+DSSSEDDDSLIEIPLLP  +AI         RNLETCLPDLLPDS
Subjt:  EEESAAQIGEEHSSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSSEDDDSLIEIPLLPNLNAI---------RNLETCLPDLLPDS

Query:  VLRQHGFVELLEEINEEDNLIEIDISKGFNRFSAVCN
        VL+Q+GFVELLEEINEEDNLIEIDIS+GFNR S VCN
Subjt:  VLRQHGFVELLEEINEEDNLIEIDISKGFNRFSAVCN

XP_023524760.1 uncharacterized protein LOC111788599 isoform X2 [Cucurbita pepo subsp. pepo]1.6e-6970.66Show/hide
Query:  MEKFTDHCSSLCS--------SSSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLT-LLLLLIPSTLFLAKKKSDSLQ--------ISAADHLFDQK
        MEKFTDHC+SLCS        SSS SSS  QSRLNV +VSTLLASICFLSLRFSPSFLT LLLLLIPS  FLA KKSDS Q        IS A HLFD+K
Subjt:  MEKFTDHCSSLCS--------SSSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLT-LLLLLIPSTLFLAKKKSDSLQ--------ISAADHLFDQK

Query:  PQTKAEEESAAQIGEEHSSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSSEDDDSLIEIPLLP---------NLNAIRNLETCLPD
        PQ   EE SAAQIGEE SSDD++SS      N G  S GDF SDLWM LDEL+ NLP S+DSSSEDDDSLIEIPLLP         N   +RNLETCLPD
Subjt:  PQTKAEEESAAQIGEEHSSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSSEDDDSLIEIPLLP---------NLNAIRNLETCLPD

Query:  LLPDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFSAVCN
        LLPDSVL+Q+GFVELLEEINEEDNLIEIDIS+GFNR S VCN
Subjt:  LLPDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFSAVCN

TrEMBL top hitse value%identityAlignment
A0A0A0K6W9 Uncharacterized protein8.5e-6974.09Show/hide
Query:  MEKFTDHCSSLCSSSSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLT-LLLLLIPSTLFLAKKKSDSLQISAADHLFDQKPQTKAEEESAAQIGEE
        MEKFT HCSSL SSSS    FTQSR N+ I STLLASI FL+LRFSPSF T LLLLLIP+ LF+A KKS+ L      HLFD+ PQT   +ES  QIG+ 
Subjt:  MEKFTDHCSSLCSSSSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLT-LLLLLIPSTLFLAKKKSDSLQISAADHLFDQKPQTKAEEESAAQIGEE

Query:  HSSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSS---EDDDSLIEIPLLPNLNAIRNLETCLPDLLPDSVLRQHGFVELLEEINEE
         SSDDETS SS  S+N+GGL SGDF SDLWM+LDEL+RNLP SED SS   +DDDSLIEIPLLPN N IRNLETCLP+LLPDSVLRQHGFVELLEEINEE
Subjt:  HSSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSS---EDDDSLIEIPLLPNLNAIRNLETCLPDLLPDSVLRQHGFVELLEEINEE

Query:  DNLIEIDISKGFNRFSAVCN
        DNLIEIDISKGFNRF  VCN
Subjt:  DNLIEIDISKGFNRFSAVCN

A0A2N9IRF2 Uncharacterized protein2.4e-0734.5Show/hide
Query:  SRLNVAIVSTLLASICFLSLRFSPSFLTLLLLLIPSTLF---LAKKK--SDSLQISAADHLFDQK--------------PQTKAEEESAAQIGEEH----
        S L VA++   L    F+S  FSP+ L  + +L+ STLF   L+KKK   D   +     + DQK              PQ   E     ++ +E+    
Subjt:  SRLNVAIVSTLLASICFLSLRFSPSFLTLLLLLIPSTLF---LAKKK--SDSLQISAADHLFDQK--------------PQTKAEEESAAQIGEEH----

Query:  ------SSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDS-SSEDDDSLIEIPLLPNLNA------IRNLETCLPDLLPDSVLRQHGFV
               S  +T   S   ++N  L    F  +L M  + + +NL  S+ S S EDDDSLIEI L  + +        +  ++ LPDLLP+S+ +Q G +
Subjt:  ------SSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDS-SSEDDDSLIEIPLLPNLNA------IRNLETCLPDLLPDSVLRQHGFV

Query:  ELLEEI---NEEDNLIEIDISKGFNRFSA
        ELL EI   NEE+NLIEID+S G N F A
Subjt:  ELLEEI---NEEDNLIEIDISKGFNRFSA

A0A5D3C7W2 Uncharacterized protein2.9e-6975.23Show/hide
Query:  MEKFTDHCSSLCSSSSLSSSFTQSRLNVAIVSTLLASICFL-SLRFSPSFLT-LLLLLIPSTLFLAKKKSDSLQISAADHLFDQKPQTKAEEESAAQIGE
        MEKFT HCSSL SSSS    FTQSR N+ I STLLASI FL +LRFSPSF T LLLLL+P+TLFLA +KS SL      HLFD+K  T   +ESA  IGE
Subjt:  MEKFTDHCSSLCSSSSLSSSFTQSRLNVAIVSTLLASICFL-SLRFSPSFLT-LLLLLIPSTLFLAKKKSDSLQISAADHLFDQKPQTKAEEESAAQIGE

Query:  EHSSDDETS-SSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSS---EDDDSLIEIPLLPNLNAIRNLETCLPDLLPDSVLRQHGFVELLEEIN
          SSDDETS SSSS S+N+GGL SGDF SDLWM+LDEL+RNLP SED SS   +DDDSLIEIPLLPN N IRNLETCLP+LLPDSVLRQHGFVELLEEIN
Subjt:  EHSSDDETS-SSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSS---EDDDSLIEIPLLPNLNAIRNLETCLPDLLPDSVLRQHGFVELLEEIN

Query:  EEDNLIEIDISKGFNRFSAVCN
        EEDNLIEIDISKGFNRFS VCN
Subjt:  EEDNLIEIDISKGFNRFSAVCN

A0A6J1FNF5 uncharacterized protein LOC1114467587.7e-7070.66Show/hide
Query:  MEKFTDHCSSLC--------SSSSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLTLL-LLLIPSTLFLAKKKSDSLQ--------ISAADHLFDQK
        MEKFTDHC+SLC        SSSS SSS  QSRLNV +VSTLLASICFLSLRFSPSFL+LL LLLIPS  FLA KKSDS Q        IS A HLFD+K
Subjt:  MEKFTDHCSSLC--------SSSSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLTLL-LLLIPSTLFLAKKKSDSLQ--------ISAADHLFDQK

Query:  PQTKAEEESAAQIGEEHSSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSSEDDDSLIEIPLLP---------NLNAIRNLETCLPD
        PQ   EE SAAQIGEE SSDD++SS      N G  S GDF SDLWM LDEL RNLP S+DSSSEDDDSLIEIPLLP         N   +RNLETCLPD
Subjt:  PQTKAEEESAAQIGEEHSSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSSEDDDSLIEIPLLP---------NLNAIRNLETCLPD

Query:  LLPDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFSAVCN
        LLPDSVL+Q+GFVELLEEINEEDNLIEIDIS+GFNR S VCN
Subjt:  LLPDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFSAVCN

A0A6J1J2I9 uncharacterized protein LOC1114806686.3e-7272.57Show/hide
Query:  MEKFTDHCSSLCSS----SSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLTLLLLLIPSTLFLAKKKSDSLQ--------ISAADHLFDQKPQTKA
        MEKFTDHC+SLCSS    SS SSS  QSRLNV +VSTLLASICFLSLRFSPSFL+LLLLLIPS  FLA KKSDS Q        IS A HLFD+KPQ   
Subjt:  MEKFTDHCSSLCSS----SSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLTLLLLLIPSTLFLAKKKSDSLQ--------ISAADHLFDQKPQTKA

Query:  EEESAAQIGEEHSSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSSEDDDSLIEIPLLPNLNAI---------RNLETCLPDLLPDS
        EE SAAQIGEE SSDD++SS      N G  S GDF SDLWM LDEL+RNLP S+DSSSEDDDSLIEIPLLP  +AI         RNLETCLPDLLPDS
Subjt:  EEESAAQIGEEHSSDDETSSSSSQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSSEDDDSLIEIPLLPNLNAI---------RNLETCLPDLLPDS

Query:  VLRQHGFVELLEEINEEDNLIEIDISKGFNRFSAVCN
        VL+Q+GFVELLEEINEEDNLIEIDIS+GFNR S VCN
Subjt:  VLRQHGFVELLEEINEEDNLIEIDISKGFNRFSAVCN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAGTTCACTGACCACTGCTCTTCACTCTGTTCATCATCATCATTATCATCCTCTTTCACACAATCACGCCTCAATGTCGCCATTGTTTCAACTCTTCTAGCTTC
AATTTGCTTCCTCAGTCTCCGATTCTCACCTTCTTTCCTCACGCTCCTCCTCCTTTTAATCCCTTCCACTCTCTTCCTCGCAAAGAAAAAATCAGATTCGCTTCAAATCT
CCGCCGCCGACCACCTGTTCGACCAAAAGCCTCAAACAAAAGCGGAAGAAGAATCCGCCGCGCAAATCGGAGAAGAGCATTCTTCCGATGATGAAACTAGTAGTAGTAGC
AGCCAGAGTAACAACAATGGCGGATTAAGTAGTGGAGATTTCAACTCCGATCTCTGGATGTATTTAGACGAACTGTCTCGGAATCTTCCGTCTTCTGAGGATTCGAGTTC
CGAAGACGACGATAGCTTGATCGAAATTCCTCTTCTTCCAAATTTGAATGCGATTCGAAATCTTGAAACGTGTTTGCCTGATTTGTTACCGGATTCTGTTTTGAGACAAC
ACGGATTTGTGGAGCTTTTGGAAGAGATCAATGAGGAAGATAACTTGATTGAGATCGATATTTCCAAAGGTTTCAATCGATTTTCCGCTGTTTGCAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAGTTCACTGACCACTGCTCTTCACTCTGTTCATCATCATCATTATCATCCTCTTTCACACAATCACGCCTCAATGTCGCCATTGTTTCAACTCTTCTAGCTTC
AATTTGCTTCCTCAGTCTCCGATTCTCACCTTCTTTCCTCACGCTCCTCCTCCTTTTAATCCCTTCCACTCTCTTCCTCGCAAAGAAAAAATCAGATTCGCTTCAAATCT
CCGCCGCCGACCACCTGTTCGACCAAAAGCCTCAAACAAAAGCGGAAGAAGAATCCGCCGCGCAAATCGGAGAAGAGCATTCTTCCGATGATGAAACTAGTAGTAGTAGC
AGCCAGAGTAACAACAATGGCGGATTAAGTAGTGGAGATTTCAACTCCGATCTCTGGATGTATTTAGACGAACTGTCTCGGAATCTTCCGTCTTCTGAGGATTCGAGTTC
CGAAGACGACGATAGCTTGATCGAAATTCCTCTTCTTCCAAATTTGAATGCGATTCGAAATCTTGAAACGTGTTTGCCTGATTTGTTACCGGATTCTGTTTTGAGACAAC
ACGGATTTGTGGAGCTTTTGGAAGAGATCAATGAGGAAGATAACTTGATTGAGATCGATATTTCCAAAGGTTTCAATCGATTTTCCGCTGTTTGCAATTGA
Protein sequenceShow/hide protein sequence
MEKFTDHCSSLCSSSSLSSSFTQSRLNVAIVSTLLASICFLSLRFSPSFLTLLLLLIPSTLFLAKKKSDSLQISAADHLFDQKPQTKAEEESAAQIGEEHSSDDETSSSS
SQSNNNGGLSSGDFNSDLWMYLDELSRNLPSSEDSSSEDDDSLIEIPLLPNLNAIRNLETCLPDLLPDSVLRQHGFVELLEEINEEDNLIEIDISKGFNRFSAVCN