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Lsi02G018360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G018360
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionmRNA decay activator protein ZFP36L2-like isoform X2
Genome locationchr02:24147412..24150401
RNA-Seq ExpressionLsi02G018360
SyntenyLsi02G018360
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154583.1 uncharacterized protein LOC111021811 [Momordica charantia]1.6e-1182Show/hide
Query:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKH
        SPQIYGTPVKVDEEVIVMDGILISSVP GAKT+RSA +S + GG LSGK+
Subjt:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKH

XP_022974000.1 mRNA decay activator protein ZFP36L2-like isoform X2 [Cucurbita maxima]2.6e-0976.47Show/hide
Query:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKHQ
        SPQIYGTP+KV EEVIVMD ILISSV  GAKTL+SALDSGS GG    K+Q
Subjt:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKHQ

XP_022974010.1 uncharacterized protein LOC111472626 isoform X1 [Cucurbita maxima]2.6e-0976.47Show/hide
Query:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKHQ
        SPQIYGTP+KV EEVIVMD ILISSV  GAKTL+SALDSGS GG    K+Q
Subjt:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKHQ

XP_023536047.1 mRNA decay activator protein ZFP36L2-like isoform X2 [Cucurbita pepo subsp. pepo]2.6e-0976.47Show/hide
Query:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKHQ
        SPQIYGTP+KV EEVIVMD ILISSV  GAKTL+SALDSGS GG    K+Q
Subjt:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKHQ

XP_038897010.1 uncharacterized protein LOC120085195 [Benincasa hispida]8.6e-1382.35Show/hide
Query:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKHQ
        SPQIYGTPVKVDEEVIVMDGILISS+P GAKT+RS LDSGS GG  S K+Q
Subjt:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKHQ

TrEMBL top hitse value%identityAlignment
A0A6J1DKP7 uncharacterized protein LOC1110218117.9e-1282Show/hide
Query:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKH
        SPQIYGTPVKVDEEVIVMDGILISSVP GAKT+RSA +S + GG LSGK+
Subjt:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKH

A0A6J1I940 mRNA decay activator protein ZFP36L2-like isoform X21.3e-0976.47Show/hide
Query:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKHQ
        SPQIYGTP+KV EEVIVMD ILISSV  GAKTL+SALDSGS GG    K+Q
Subjt:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKHQ

A0A6J1ICT5 mRNA decay activator protein ZFP36L2-like isoform X21.3e-0976.47Show/hide
Query:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKHQ
        SPQIYGTP+KV EEVIVMD ILISSV  GAKTL+SALDSGS GG    K+Q
Subjt:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKHQ

A0A6J1ICU5 uncharacterized protein LOC111472626 isoform X11.3e-0976.47Show/hide
Query:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKHQ
        SPQIYGTP+KV EEVIVMD ILISSV  GAKTL+SALDSGS GG    K+Q
Subjt:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKHQ

A0A6J1IEX1 uncharacterized protein LOC111472616 isoform X11.3e-0976.47Show/hide
Query:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKHQ
        SPQIYGTP+KV EEVIVMD ILISSV  GAKTL+SALDSGS GG    K+Q
Subjt:  SPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKHQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACTAATGTTGTTCCTACTCCACTCCCAAACTCCGAATTCATGAATTCATGCTCATTTTCCGTCCAAGGAAGAAATGTTCCAAGTGTTGAAGAACGCCTTATCGA
CATCGTCACCGTCATGCTCAACAATCAGAGTTGCAATTGGGAGACTTTTGGCTTCATTCATATAGTCTTCACAAAGTTTAGTCTCTGGCCGAAGGTAAAGGAGCTGAAAG
ACTATGAAAGGAGAAAGCATTTGCATTCAACATTGAAACAAAAGTTTAATAAACTTATATTTGGATTATTGTCTGGGACATTAGATGTTCTTTTCCTGAATCATGGAAGA
TCGTCAAGGCAAGGGGAGCTCCAAAACATCCATTATCAAAGGCCTAAACACTTCGATCCAGCAGATCAACATTCAGATGGGCAATCACTTGCACTTCCAGAAGCAGTAGC
TTCGGTTCTCGGGGAGCAGGATCGCTGTTATAACCACTTTCGGCTATTGAGAACTTGGAAATGCCACATGTCTCCGCAAATTTATGGAACTCCGGTGAAGGTTGATGAAG
AAGTGATAGTAATGGATGGGATTTTGATCAGTTCGGTCCCTGAGGGAGCGAAGACGCTGAGGTCTGCTTTAGATTCTGGAAGTGCTGGAGGTTTGTTGTCAGGCAAACAT
CAAATACAGAACGGTCATTTGCCACAACTGGGAGAATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTACTAATGTTGTTCCTACTCCACTCCCAAACTCCGAATTCATGAATTCATGCTCATTTTCCGTCCAAGGAAGAAATGTTCCAAGTGTTGAAGAACGCCTTATCGA
CATCGTCACCGTCATGCTCAACAATCAGAGTTGCAATTGGGAGACTTTTGGCTTCATTCATATAGTCTTCACAAAGTTTAGTCTCTGGCCGAAGGTAAAGGAGCTGAAAG
ACTATGAAAGGAGAAAGCATTTGCATTCAACATTGAAACAAAAGTTTAATAAACTTATATTTGGATTATTGTCTGGGACATTAGATGTTCTTTTCCTGAATCATGGAAGA
TCGTCAAGGCAAGGGGAGCTCCAAAACATCCATTATCAAAGGCCTAAACACTTCGATCCAGCAGATCAACATTCAGATGGGCAATCACTTGCACTTCCAGAAGCAGTAGC
TTCGGTTCTCGGGGAGCAGGATCGCTGTTATAACCACTTTCGGCTATTGAGAACTTGGAAATGCCACATGTCTCCGCAAATTTATGGAACTCCGGTGAAGGTTGATGAAG
AAGTGATAGTAATGGATGGGATTTTGATCAGTTCGGTCCCTGAGGGAGCGAAGACGCTGAGGTCTGCTTTAGATTCTGGAAGTGCTGGAGGTTTGTTGTCAGGCAAACAT
CAAATACAGAACGGTCATTTGCCACAACTGGGAGAATTCTGA
Protein sequenceShow/hide protein sequence
MATNVVPTPLPNSEFMNSCSFSVQGRNVPSVEERLIDIVTVMLNNQSCNWETFGFIHIVFTKFSLWPKVKELKDYERRKHLHSTLKQKFNKLIFGLLSGTLDVLFLNHGR
SSRQGELQNIHYQRPKHFDPADQHSDGQSLALPEAVASVLGEQDRCYNHFRLLRTWKCHMSPQIYGTPVKVDEEVIVMDGILISSVPEGAKTLRSALDSGSAGGLLSGKH
QIQNGHLPQLGEF