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Lsi02G018370 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G018370
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionC3H1-type domain-containing protein
Genome locationchr02:24150423..24152013
RNA-Seq ExpressionLsi02G018370
SyntenyLsi02G018370
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601766.1 hypothetical protein SDJN03_06999, partial [Cucurbita argyrosperma subsp. sororia]7.1e-1157.89Show/hide
Query:  LFAHGKEELRPGRLPVRTKPKLSE---TYSPKFRNRHSLIGIAATTTQSNSVDTITKIELNKRESY-YNNVLDFNT
        +FAHGKEE+RP  LP++TKPKL E   T+  K RN HSL GIAA TTQSNS+DT  K EL++RE +  N++ + NT
Subjt:  LFAHGKEELRPGRLPVRTKPKLSE---TYSPKFRNRHSLIGIAATTTQSNSVDTITKIELNKRESY-YNNVLDFNT

KAG7032491.1 mRNA decay activator protein ZFP36L3, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-1058.67Show/hide
Query:  FAHGKEELRPGRLPVRTKPKLSE---TYSPKFRNRHSLIGIAATTTQSNSVDTITKIELNKRESY-YNNVLDFNT
        FAHGKEE+RP  LP++TKPKL E   T+  K RN HSL GIAA TTQSNS+DT  K EL++RE +  N++ + NT
Subjt:  FAHGKEELRPGRLPVRTKPKLSE---TYSPKFRNRHSLIGIAATTTQSNSVDTITKIELNKRESY-YNNVLDFNT

TYK07952.1 tristetraprolin-like isoform X2 [Cucumis melo var. makuwa]2.8e-1576.19Show/hide
Query:  FAHGKEELRPGRLPVRTKPKLSETYSPKFRNRHSLIGIAATTT---QSNSVDTITKIELNKRE
        FAHGKE+LRPGRLPVRTK K SETY  KFRN HSL GI+ATTT    SN VDTITK EL+KRE
Subjt:  FAHGKEELRPGRLPVRTKPKLSETYSPKFRNRHSLIGIAATTT---QSNSVDTITKIELNKRE

XP_004148935.1 uncharacterized protein LOC101215865 [Cucumis sativus]2.8e-1577.42Show/hide
Query:  FAHGKEELRPGRLPVRTKPKLSETYSPKFRNRHSLIGIAATTT---QSNSVDTITKIELNKR
        FAHGKE+LRPGRLPVRTK K SETY  KFRN HSL GIAATTT    SN VDTITK EL+KR
Subjt:  FAHGKEELRPGRLPVRTKPKLSETYSPKFRNRHSLIGIAATTT---QSNSVDTITKIELNKR

XP_038897010.1 uncharacterized protein LOC120085195 [Benincasa hispida]1.8e-1461.64Show/hide
Query:  FAHGKEELRPGRLPVRTKPKLSETYSPKFRNRHSLIGIAATTTQSNSVDTITKIELNKRESYYNNVLDFNTSH
        FAHGKE+LRP R+PVRTKPK SETY PKFRN HSL GIAA TT SN +DT  K EL++RE         +  H
Subjt:  FAHGKEELRPGRLPVRTKPKLSETYSPKFRNRHSLIGIAATTTQSNSVDTITKIELNKRESYYNNVLDFNTSH

TrEMBL top hitse value%identityAlignment
A0A0A0K529 C3H1-type domain-containing protein1.4e-1577.42Show/hide
Query:  FAHGKEELRPGRLPVRTKPKLSETYSPKFRNRHSLIGIAATTT---QSNSVDTITKIELNKR
        FAHGKE+LRPGRLPVRTK K SETY  KFRN HSL GIAATTT    SN VDTITK EL+KR
Subjt:  FAHGKEELRPGRLPVRTKPKLSETYSPKFRNRHSLIGIAATTT---QSNSVDTITKIELNKR

A0A5D3C9H3 Tristetraprolin-like isoform X21.4e-1576.19Show/hide
Query:  FAHGKEELRPGRLPVRTKPKLSETYSPKFRNRHSLIGIAATTT---QSNSVDTITKIELNKRE
        FAHGKE+LRPGRLPVRTK K SETY  KFRN HSL GI+ATTT    SN VDTITK EL+KRE
Subjt:  FAHGKEELRPGRLPVRTKPKLSETYSPKFRNRHSLIGIAATTT---QSNSVDTITKIELNKRE

A0A6J1EPR1 uncharacterized protein LOC111436459 isoform X11.3e-1058.11Show/hide
Query:  FAHGKEELRPGRLPVRTKPKLSE---TYSPKFRNRHSLIGIAATTTQSNSVDTITKIELNKRESYYNNVLDFNT
        FAHGKEELRP  LP++TKPK  E   T+  K RN HSL GI ATTTQSNS DT  K EL++R    N++ + NT
Subjt:  FAHGKEELRPGRLPVRTKPKLSE---TYSPKFRNRHSLIGIAATTTQSNSVDTITKIELNKRESYYNNVLDFNT

A0A6J1EQM3 uncharacterized protein LOC111436579 isoform X11.3e-1058.11Show/hide
Query:  FAHGKEELRPGRLPVRTKPKLSE---TYSPKFRNRHSLIGIAATTTQSNSVDTITKIELNKRESYYNNVLDFNT
        FAHGKEELRP  LP++TKPK  E   T+  K RN HSL GI ATTTQSNS DT  K EL++R    N++ + NT
Subjt:  FAHGKEELRPGRLPVRTKPKLSE---TYSPKFRNRHSLIGIAATTTQSNSVDTITKIELNKRESYYNNVLDFNT

A0A6J1ICU5 uncharacterized protein LOC111472626 isoform X15.0e-1058.11Show/hide
Query:  FAHGKEELRPGRLPVRTKPKLSE---TYSPKFRNRHSLIGIAATTTQSNSVDTITKIELNKRESYYNNVLDFNT
        FAHGKEELRP  LPV+TKPK  E   T+  K RN HSL GIAA TTQSNS+    K ELN+R    N++ + NT
Subjt:  FAHGKEELRPGRLPVRTKPKLSE---TYSPKFRNRHSLIGIAATTTQSNSVDTITKIELNKRESYYNNVLDFNT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGTTACTCATTTCATTATCTATTCACCGAAAAGTTTAGGGTCCTTGTTTGCACATGGAAAGGAGGAGCTTCGACCAGGTCGTTTACCAGTTAGAACCAAGCCTAA
GTTGAGCGAAACGTACAGTCCCAAGTTTCGCAACAGGCATTCGCTAATAGGAATAGCTGCAACAACAACACAATCAAACTCAGTAGATACAATCACCAAAATTGAACTTA
ACAAAAGAGAGTCTTACTACAACAACGTCCTCGACTTCAATACGTCACATAAACACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAGTTACTCATTTCATTATCTATTCACCGAAAAGTTTAGGGTCCTTGTTTGCACATGGAAAGGAGGAGCTTCGACCAGGTCGTTTACCAGTTAGAACCAAGCCTAA
GTTGAGCGAAACGTACAGTCCCAAGTTTCGCAACAGGCATTCGCTAATAGGAATAGCTGCAACAACAACACAATCAAACTCAGTAGATACAATCACCAAAATTGAACTTA
ACAAAAGAGAGTCTTACTACAACAACGTCCTCGACTTCAATACGTCACATAAACACTAA
Protein sequenceShow/hide protein sequence
MPVTHFIIYSPKSLGSLFAHGKEELRPGRLPVRTKPKLSETYSPKFRNRHSLIGIAATTTQSNSVDTITKIELNKRESYYNNVLDFNTSHKH