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Lsi02G018750 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G018750
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA repair protein REV1
Genome locationchr02:24563174..24566753
RNA-Seq ExpressionLsi02G018750
SyntenyLsi02G018750
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043485.1 DNA repair protein REV1 isoform X1 [Cucumis melo var. makuwa]3.5e-2030.77Show/hide
Query:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------
        L+ NA AE+NEKSSDDLEA  LKDT+ISDVDVS EYKP  CESFE+LP KDAD                                               
Subjt:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------

Query:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD
                                                                                           D FFVSVVIRNIP+FKD
Subjt:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD

Query:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK
         P+                                                      VADQFY+ILHKHCEKVQAVSCDEAFLDISGTN VDP     K
Subjt:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK

XP_016898826.1 PREDICTED: DNA repair protein REV1 isoform X1 [Cucumis melo]3.5e-2030.77Show/hide
Query:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------
        L+ NA AE+NEKSSDDLEA  LKDT+ISDVDVS EYKP  CESFE+LP KDAD                                               
Subjt:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------

Query:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD
                                                                                           D FFVSVVIRNIP+FKD
Subjt:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD

Query:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK
         P+                                                      VADQFY+ILHKHCEKVQAVSCDEAFLDISGTN VDP     K
Subjt:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK

XP_016898828.1 PREDICTED: DNA repair protein REV1 isoform X2 [Cucumis melo]3.5e-2030.77Show/hide
Query:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------
        L+ NA AE+NEKSSDDLEA  LKDT+ISDVDVS EYKP  CESFE+LP KDAD                                               
Subjt:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------

Query:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD
                                                                                           D FFVSVVIRNIP+FKD
Subjt:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD

Query:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK
         P+                                                      VADQFY+ILHKHCEKVQAVSCDEAFLDISGTN VDP     K
Subjt:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK

XP_016898829.1 PREDICTED: DNA repair protein REV1 isoform X3 [Cucumis melo]3.5e-2030.77Show/hide
Query:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------
        L+ NA AE+NEKSSDDLEA  LKDT+ISDVDVS EYKP  CESFE+LP KDAD                                               
Subjt:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------

Query:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD
                                                                                           D FFVSVVIRNIP+FKD
Subjt:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD

Query:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK
         P+                                                      VADQFY+ILHKHCEKVQAVSCDEAFLDISGTN VDP     K
Subjt:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK

XP_038888412.1 DNA repair protein REV1 [Benincasa hispida]2.2e-2232.44Show/hide
Query:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------
        L+ NA AELNEKSSDDLEAT LKDTNISDVD S EYKPQVCESFE+ P KDAD                                               
Subjt:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------

Query:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD
                                                                                           D FFVSVVIRNIPEFKD
Subjt:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD

Query:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK
         P+                                                      VADQFYDILHKHCEKVQAVSCDEAFLDISGTN VDP     K
Subjt:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK

TrEMBL top hitse value%identityAlignment
A0A1S4DS62 DNA repair protein REV11.7e-2030.77Show/hide
Query:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------
        L+ NA AE+NEKSSDDLEA  LKDT+ISDVDVS EYKP  CESFE+LP KDAD                                               
Subjt:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------

Query:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD
                                                                                           D FFVSVVIRNIP+FKD
Subjt:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD

Query:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK
         P+                                                      VADQFY+ILHKHCEKVQAVSCDEAFLDISGTN VDP     K
Subjt:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK

A0A1S4DS66 DNA repair protein REV11.7e-2030.77Show/hide
Query:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------
        L+ NA AE+NEKSSDDLEA  LKDT+ISDVDVS EYKP  CESFE+LP KDAD                                               
Subjt:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------

Query:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD
                                                                                           D FFVSVVIRNIP+FKD
Subjt:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD

Query:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK
         P+                                                      VADQFY+ILHKHCEKVQAVSCDEAFLDISGTN VDP     K
Subjt:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK

A0A1S4DS83 DNA repair protein REV11.7e-2030.77Show/hide
Query:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------
        L+ NA AE+NEKSSDDLEA  LKDT+ISDVDVS EYKP  CESFE+LP KDAD                                               
Subjt:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------

Query:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD
                                                                                           D FFVSVVIRNIP+FKD
Subjt:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD

Query:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK
         P+                                                      VADQFY+ILHKHCEKVQAVSCDEAFLDISGTN VDP     K
Subjt:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK

A0A5A7TPZ8 DNA repair protein REV11.7e-2030.77Show/hide
Query:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------
        L+ NA AE+NEKSSDDLEA  LKDT+ISDVDVS EYKP  CESFE+LP KDAD                                               
Subjt:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------

Query:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD
                                                                                           D FFVSVVIRNIP+FKD
Subjt:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD

Query:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK
         P+                                                      VADQFY+ILHKHCEKVQAVSCDEAFLDISGTN VDP     K
Subjt:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK

A0A6J1I4X1 DNA repair protein REV13.9e-1729.1Show/hide
Query:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------
        L+ NA  ELNEK SDDL+A  LKDT+ISDVD S EY PQ+CESFE+LP K+AD                                               
Subjt:  LRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDAD-----------------------------------------------

Query:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD
                                                                                           D FFVSVVIRN P+FKD
Subjt:  -----------------------------------------------------------------------------------DFFFVSVVIRNIPEFKD

Query:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK
         P+                                                      VADQFYDILHKHCEKVQAVSCDEAFLDISGT++VDP     K
Subjt:  WPIT-----------------------------------------------------VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK

SwissProt top hitse value%identityAlignment
A3EWL3 DNA repair protein REV12.2e-0974.29Show/hide
Query:  VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVD
        VADQFYDILH+HC KVQA+SCDEAFLD+S  ++V+
Subjt:  VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVD

Arabidopsis top hitse value%identityAlignment
AT5G44750.1 DNA-directed DNA polymerases1.6e-1074.29Show/hide
Query:  VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVD
        VADQFYDILH+HC KVQA+SCDEAFLD+S  ++V+
Subjt:  VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVD

AT5G44750.2 DNA-directed DNA polymerases1.6e-1074.29Show/hide
Query:  VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVD
        VADQFYDILH+HC KVQA+SCDEAFLD+S  ++V+
Subjt:  VADQFYDILHKHCEKVQAVSCDEAFLDISGTNEVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGATTGGATGTCCTTCAGCGGTGGACTCCCAGTTGTAAAACCACATGGATCTTGGATTCTGTTGCTTCTAATAAGCTATTAAGATATAATGCATATGCTGAACT
GAATGAGAAGTCAAGTGATGATTTAGAGGCTACCAATCTAAAGGATACAAATATATCCGATGTAGATGTATCTACTGAATATAAACCACAAGTTTGTGAAAGTTTTGAGA
TTCTTCCTCTAAAGGATGCTGATGACTTCTTTTTTGTCTCAGTGGTTATTCGAAACATTCCGGAATTTAAGGATTGGCCTATAACTGTAGCCGATCAGTTCTATGACATA
TTGCATAAGCATTGTGAGAAAGTGCAGGCTGTAAGTTGTGATGAAGCATTTTTGGATATCTCGGGCACAAACGAGGTAGACCCGAGGTATTGGCTTAAAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAGATTGGATGTCCTTCAGCGGTGGACTCCCAGTTGTAAAACCACATGGATCTTGGATTCTGTTGCTTCTAATAAGCTATTAAGATATAATGCATATGCTGAACT
GAATGAGAAGTCAAGTGATGATTTAGAGGCTACCAATCTAAAGGATACAAATATATCCGATGTAGATGTATCTACTGAATATAAACCACAAGTTTGTGAAAGTTTTGAGA
TTCTTCCTCTAAAGGATGCTGATGACTTCTTTTTTGTCTCAGTGGTTATTCGAAACATTCCGGAATTTAAGGATTGGCCTATAACTGTAGCCGATCAGTTCTATGACATA
TTGCATAAGCATTGTGAGAAAGTGCAGGCTGTAAGTTGTGATGAAGCATTTTTGGATATCTCGGGCACAAACGAGGTAGACCCGAGGTATTGGCTTAAAAAATAAGAAAA
GAAATTTTTGATACAACAAGATGTATTGCAAGTGCTGGCATAACTACGAATATGCTAATGGCTCACCTTGCCACTGGAACTGCAAAACCTGATGGTCAGTGTTACATTCC
TTCAGAGAAGGTAGGTTCTAGAATTTTTTGCACTAAACCTTTATTTGGTCAAATCACTAAAGAACAATAAATTTATTAGAAAATGAAAGAAAATTTTGGTTCATTAGTCT
CATAAACGTGCTTGGTGCATTACATTAAAATGTTCTTGGAGAGTTCTTGGAGAATTTGGAATTTTATTATCTTGCCTCTAAAATGAGGAGTGCAGTCGTATATATAGACT
GCCACAACAAAACACAAAAGCTGAATAACTAACACCCAACAACTAACTAAAATACAAAGGAAATATCCAAAGTTGAGACAACGGGAACTAAAACAAATTAACAGCTAATA
GACACAAGTCCAACTGAAAATAAGCCCGAAAGGCCCTACATCATGGTACTAGAGAAACATTTTATTGTATTTGGTCTAGAAAGCTAGATAATGGCCAATTTTTTTTGGAT
TTGTGGAGTTTGAATTGTTATGTATGTGAGAAGAAAGAAAGATAGGATAAAAAAAATTTTGGATTATAGTATGAGATTGGGCTACTTTTTGTTTGAAGGCTTTGTAGTGG
GTAAAGAGCATGTTCATGTTTCCATCCTTCAATTTTCCAATGACACTCTCACTTTTTGCAAATATGATGATAGGATGTTGGATAAATTATGTCGAACTCTCGAGTTGTTT
GAATGTTGCTCAAGACAGAGATAAATTGGGAAAAATCAACTTTGTGTGGGGTTAATGTGGAAGAAAACATGCTGTTGTCCGCTGCTTCTAGGCTGAATTGCAGAGTTGTG
TACTTACCTTGGCTTGCTGTTGGGAGGGTATCCCAAAAGAGCTCCGTTTTGGCAACCAATGATTGATAAAATCTATACAAAGCTTGATAAATGGAGGACGTTTAATCTCT
CAAGAGGAGGGCGTGCTACGCTTTGTAAGTCAGTTCTATCCAATCTTCC
Protein sequenceShow/hide protein sequence
MLRLDVLQRWTPSCKTTWILDSVASNKLLRYNAYAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVCESFEILPLKDADDFFFVSVVIRNIPEFKDWPITVADQFYDI
LHKHCEKVQAVSCDEAFLDISGTNEVDPRYWLKK