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Lsi02G019150 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G019150
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationchr02:25058460..25063271
RNA-Seq ExpressionLsi02G019150
SyntenyLsi02G019150
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0097525 - spliceosomal snRNP complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3468389.1 small nuclear ribonucleoprotein E-like [Gossypium australe]4.0e-1360.24Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG
        KARIQIWLFEQKDLRIEGRII         L   V+       + + +  L   + GFDEYMNLVLDDAEEVNVKKKSRK+LG
Subjt:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG

KAA3468390.1 small nuclear ribonucleoprotein E-like [Gossypium australe]8.8e-1359.52Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVE-ILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG
        KARIQIWLFEQKDLRIEGRII                     + G   E ++ P   GFDEYMNLVLDDAEEVNVKKKSRK+LG
Subjt:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVE-ILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG

KAG6739774.1 hypothetical protein POTOM_057389 [Populus tomentosa]5.5e-1557.14Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIKDKDRFACL---LSTIVVRRRCSKASGWTV-----EILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG
        KARIQIWLFEQKDLRIEGRII++     CL   L   +VR   +      V     + +   V GFDEYMNLVL+DAEEVN+KKKSRK+LG
Subjt:  KARIQIWLFEQKDLRIEGRIIKDKDRFACL---LSTIVVRRRCSKASGWTV-----EILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG

KAG6740799.1 hypothetical protein POTOM_056268 [Populus tomentosa]6.1e-1458.14Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKAS---GWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG
        KARIQIWLFEQKDLRIEGRII       CL    ++ R+    +   G T +       GFDEYMNLVL+DAEEVN+KKKSRK+LG
Subjt:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKAS---GWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG

KAG6770106.1 hypothetical protein POTOM_025774 [Populus tomentosa]2.1e-1455.32Show/hide
Query:  KARIQIWLFEQKDLRIEGRII--------KDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVY---GFDEYMNLVLDDAEEVNVKKKSRKTLG
        KARIQIWLFEQKDLRIEGRII        K         +T+   ++CS     T+E+   E     GFDEYMNLVL+DAEEVN+KKKSRK+LG
Subjt:  KARIQIWLFEQKDLRIEGRII--------KDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVY---GFDEYMNLVLDDAEEVNVKKKSRKTLG

TrEMBL top hitse value%identityAlignment
A0A059AKN9 Small nuclear ribonucleoprotein E1.6e-1256.47Show/hide
Query:  MDKARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG
        M KARIQIWLFEQKDLRIEGRII                                   GFDEYMNLVLDDAEEVNVKKK+RKTLG
Subjt:  MDKARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG

A0A5B6VGP3 Small nuclear ribonucleoprotein E4.3e-1359.52Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVE-ILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG
        KARIQIWLFEQKDLRIEGRII                     + G   E ++ P   GFDEYMNLVLDDAEEVNVKKKSRK+LG
Subjt:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVE-ILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG

A0A5B6VGS0 Small nuclear ribonucleoprotein E1.9e-1360.24Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG
        KARIQIWLFEQKDLRIEGRII         L   V+       + + +  L   + GFDEYMNLVLDDAEEVNVKKKSRK+LG
Subjt:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG

A0A6J1E1F5 Small nuclear ribonucleoprotein E1.2e-1260.24Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG
        KARIQIWLFEQKDLRIEGRII+            VV   C     +   I+     GFDEYMNLVLDDAEEVNVKKKS+K LG
Subjt:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG

J3L987 Small nuclear ribonucleoprotein E1.2e-1248.48Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIK-----------DKDRFAC-----LLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG
        KARIQIWLFEQKDLRIEGRII+             +   C     LLS  ++    ++   W   +L+    GFDEYMNLVLD+AEE+N+KK +RK+LG
Subjt:  KARIQIWLFEQKDLRIEGRIIK-----------DKDRFAC-----LLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG

SwissProt top hitse value%identityAlignment
A1XQR9 Small nuclear ribonucleoprotein E1.8e-0841.67Show/hide
Query:  DKARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG
        +++RIQ+WL+EQ ++RIEG II                                   GFDEYMNLVLDDAEE++ K KSRK LG
Subjt:  DKARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG

A4FUI2 Small nuclear ribonucleoprotein E1.8e-0841.67Show/hide
Query:  DKARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG
        +++RIQ+WL+EQ ++RIEG II                                   GFDEYMNLVLDDAEE++ K KSRK LG
Subjt:  DKARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG

P62303 Small nuclear ribonucleoprotein E1.8e-0841.67Show/hide
Query:  DKARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG
        +++RIQ+WL+EQ ++RIEG II                                   GFDEYMNLVLDDAEE++ K KSRK LG
Subjt:  DKARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG

P62304 Small nuclear ribonucleoprotein E1.8e-0841.67Show/hide
Query:  DKARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG
        +++RIQ+WL+EQ ++RIEG II                                   GFDEYMNLVLDDAEE++ K KSRK LG
Subjt:  DKARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG

P62305 Small nuclear ribonucleoprotein E1.8e-0841.67Show/hide
Query:  DKARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG
        +++RIQ+WL+EQ ++RIEG II                                   GFDEYMNLVLDDAEE++ K KSRK LG
Subjt:  DKARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein1.2e-1249.4Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG
        KARIQIWLFEQKDLRIEGRI                                    GFDEYMNLVLD+AEEV++KK +RK LG
Subjt:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG

AT2G18740.2 Small nuclear ribonucleoprotein family protein1.2e-1249.4Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG
        KARIQIWLFEQKDLRIEGRI                                    GFDEYMNLVLD+AEEV++KK +RK LG
Subjt:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG

AT4G30330.1 Small nuclear ribonucleoprotein family protein3.2e-1350.6Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG
        KARIQIWLFEQKDLRIEGRI                                    GFDEYMNLVLD+AEEV++KKK+RK LG
Subjt:  KARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACTTGAGGATTGAAGGCCGGATCATTAAAGACAAGGATAGGTTTGCTTGTCTTCTATCCACTATTGT
TGTGAGAAGAAGGTGCTCAAAGGCTTCCGGGTGGACGGTGGAAATTCTGAGGCCCGAGGTCTATGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCTGAGGAAG
TCAACGTAAAGAAGAAGAGCAGGAAAACTTTAGGTTTGTCTCTTCATTATTACCCTTCCGTAGCCATTACTTTCTGGAGTCTGAAGGACAGAATAAAAACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACTTGAGGATTGAAGGCCGGATCATTAAAGACAAGGATAGGTTTGCTTGTCTTCTATCCACTATTGT
TGTGAGAAGAAGGTGCTCAAAGGCTTCCGGGTGGACGGTGGAAATTCTGAGGCCCGAGGTCTATGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCTGAGGAAG
TCAACGTAAAGAAGAAGAGCAGGAAAACTTTAGGTTTGTCTCTTCATTATTACCCTTCCGTAGCCATTACTTTCTGGAGTCTGAAGGACAGAATAAAAACTTAG
Protein sequenceShow/hide protein sequence
MDKARIQIWLFEQKDLRIEGRIIKDKDRFACLLSTIVVRRRCSKASGWTVEILRPEVYGFDEYMNLVLDDAEEVNVKKKSRKTLGLSLHYYPSVAITFWSLKDRIKT