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Lsi02G019640 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G019640
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein GIGANTEA-like isoform X1
Genome locationchr02:25533202..25536935
RNA-Seq ExpressionLsi02G019640
SyntenyLsi02G019640
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009409 - response to cold (biological process)
GO:0009637 - response to blue light (biological process)
GO:0010218 - response to far red light (biological process)
GO:0010378 - temperature compensation of the circadian clock (biological process)
GO:0042542 - response to hydrogen peroxide (biological process)
GO:0048578 - positive regulation of long-day photoperiodism, flowering (biological process)
GO:0005654 - nucleoplasm (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143670.1 protein GIGANTEA-like isoform X2 [Momordica charantia]2.2e-0785.71Show/hide
Query:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
        MATSSERWIDRLQLSSLFWPPPDDDQQRK   + Y
Subjt:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
XP_022143671.1 protein GIGANTEA-like isoform X3 [Momordica charantia]2.2e-0785.71Show/hide
Query:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
        MATSSERWIDRLQLSSLFWPPPDDDQQRK   + Y
Subjt:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
XP_022935847.1 protein GIGANTEA-like isoform X2 [Cucurbita moschata]2.2e-0785.71Show/hide
Query:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
        MATSSERWIDRLQLSSLFWPPPDDDQQRK   + Y
Subjt:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
XP_022935848.1 protein GIGANTEA-like isoform X3 [Cucurbita moschata]2.2e-0785.71Show/hide
Query:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
        MATSSERWIDRLQLSSLFWPPPDDDQQRK   + Y
Subjt:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
XP_022976904.1 protein GIGANTEA-like isoform X2 [Cucurbita maxima]2.2e-0785.71Show/hide
Query:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
        MATSSERWIDRLQLSSLFWPPPDDDQQRK   + Y
Subjt:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
TrEMBL top hitse value%identityAlignment
A0A6J1CQ08 protein GIGANTEA-like isoform X11.0e-0785.71Show/hide
Query:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
        MATSSERWIDRLQLSSLFWPPPDDDQQRK   + Y
Subjt:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
A0A6J1CRI0 protein GIGANTEA-like isoform X41.0e-0785.71Show/hide
Query:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
        MATSSERWIDRLQLSSLFWPPPDDDQQRK   + Y
Subjt:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
A0A6J1F5V5 protein GIGANTEA-like isoform X11.0e-0785.71Show/hide
Query:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
        MATSSERWIDRLQLSSLFWPPPDDDQQRK   + Y
Subjt:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
A0A6J1INH7 protein GIGANTEA-like isoform X11.0e-0785.71Show/hide
Query:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
        MATSSERWIDRLQLSSLFWPPPDDDQQRK   + Y
Subjt:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
A0A6J1IPZ2 protein GIGANTEA-like isoform X21.0e-0785.71Show/hide
Query:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
        MATSSERWIDRLQLSSLFWPPPDDDQQRK   + Y
Subjt:  MATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLY
SwissProt top hitse value%identityAlignment
Q9AWL7 Protein GIGANTEA6.1e-0565.52Show/hide
Query:  MATSSERWIDRLQLSSLFWPPPDDDQQRK
        M+ S+E+WID LQ SSLFWPPP D QQ++
Subjt:  MATSSERWIDRLQLSSLFWPPPDDDQQRK
Q9SQI2 Protein GIGANTEA3.6e-0565.62Show/hide
Query:  LAMATSSERWIDRLQLSSLFWPPPDDDQQRKE
        +A ++SSERWID LQ SSL WPPP D QQ K+
Subjt:  LAMATSSERWIDRLQLSSLFWPPPDDDQQRKE
Arabidopsis top hitse value%identityAlignment
AT1G22770.1 gigantea protein (GI)2.6e-0665.62Show/hide
Query:  LAMATSSERWIDRLQLSSLFWPPPDDDQQRKE
        +A ++SSERWID LQ SSL WPPP D QQ K+
Subjt:  LAMATSSERWIDRLQLSSLFWPPPDDDQQRKE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGTTTGGTGGTTTGGTTATGGCAATTGTAAATATGGGATTGTGAACTTGGGAACTTCTCAGAAACTGAAACTTGGAACATCATTAGCAATGGCAACTTCAAGTGA
GAGATGGATTGATAGACTTCAATTATCGTCCTTGTTCTGGCCTCCCCCAGATGATGATCAGCAAAGAAAGGAAGCAAAAAACCTTTATGGGTATAAGGCTAAAAGATACA
AGCTACCCCAAAGGGATAAGGAAAGCATAAAAAACATTGGAACAATACAAAAGAAAATATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGTTTGGTGGTTTGGTTATGGCAATTGTAAATATGGGATTGTGAACTTGGGAACTTCTCAGAAACTGAAACTTGGAACATCATTAGCAATGGCAACTTCAAGTGA
GAGATGGATTGATAGACTTCAATTATCGTCCTTGTTCTGGCCTCCCCCAGATGATGATCAGCAAAGAAAGGAAGCAAAAAACCTTTATGGGTATAAGGCTAAAAGATACA
AGCTACCCCAAAGGGATAAGGAAAGCATAAAAAACATTGGAACAATACAAAAGAAAATATAA
Protein sequenceShow/hide protein sequence
MQVWWFGYGNCKYGIVNLGTSQKLKLGTSLAMATSSERWIDRLQLSSLFWPPPDDDQQRKEAKNLYGYKAKRYKLPQRDKESIKNIGTIQKKI