CuGenDBv2

Gene ID	Lsi02G020360
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Auxin response factor
Genome location	chr02:26424205..26424705
RNA-Seq Expression	Lsi02G020360
Synteny	Lsi02G020360
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0009734 - auxin-activated signaling pathway (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR000270 - PB1 domain IPR044835 - Auxin response factor

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0050656.1 auxin response factor 18 isoform X2 [Cucumis melo var. makuwa]

6.3e-27

81.33

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS
        MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELR++NKWS+VFTDDENDMMLVGDDPWPEF  ++    + +S
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS

TYK07778.1 auxin response factor 18 isoform X2 [Cucumis melo var. makuwa]

6.3e-27

81.33

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS
        MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELR++NKWS+VFTDDENDMMLVGDDPWPEF  ++    + +S
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS

XP_004139643.1 auxin response factor 18 isoform X1 [Cucumis sativus]

1.4e-26

81.33

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS
        MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELR +NKWS+VFTDDENDMMLVGDDPWPEF  ++    + +S
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS

XP_011659155.1 auxin response factor 18 isoform X2 [Cucumis sativus]

1.4e-26

81.33

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS
        MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELR +NKWS+VFTDDENDMMLVGDDPWPEF  ++    + +S
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS

XP_016902809.1 PREDICTED: auxin response factor 18-like [Cucumis melo]

6.3e-27

81.33

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS
        MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELR++NKWS+VFTDDENDMMLVGDDPWPEF  ++    + +S
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K887 Auxin response factor

6.8e-27

81.33

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS
        MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELR +NKWS+VFTDDENDMMLVGDDPWPEF  ++    + +S
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS

A0A1S4E3K7 Auxin response factor

3.1e-27

81.33

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS
        MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELR++NKWS+VFTDDENDMMLVGDDPWPEF  ++    + +S
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS

A0A5A7U902 Auxin response factor

3.1e-27

81.33

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS
        MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELR++NKWS+VFTDDENDMMLVGDDPWPEF  ++    + +S
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS

A0A5D3C9C4 Auxin response factor

3.1e-27

81.33

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS
        MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELR++NKWS+VFTDDENDMMLVGDDPWPEF  ++    + +S
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS

A0A6J1KTK5 Auxin response factor

2.0e-26

81.33

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS
        MQGVAVGRAVDLTTL+GYEDLIDELENVFEIKGELR+MNKWSVVFTDDE DMMLVGDDPWPEF  ++    + +S
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLAS

SwissProt top hits

e value

%identity

Alignment

Q6YVY0 Auxin response factor 7

2.3e-19

70.31

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGEL-RKMNKWSVVFTDDENDMMLVGDDPWPEF
        MQG+AVGRAVDLT L GY+DL  +LE +F+I+GEL   + KW VV+TDDE+DMMLVGDDPWPEF
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGEL-RKMNKWSVVFTDDENDMMLVGDDPWPEF

Q9C5W9 Auxin response factor 18

2.7e-20

71.43

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF
        MQG+AVGRAVDLT L+ Y++LIDELE +FEI+G+L   +KW VVFTDDE DMML GDDPW EF
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF

Q9XED8 Auxin response factor 9

2.2e-22

73.02

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF
        MQGV VGRAVDL  L+GY +LID++E +F+IKGELR  N+W +VFTDDE DMMLVGDDPWPEF
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF

Q9XID4 Auxin response factor 12

1.1e-18

63.49

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF
        MQGV +GRAVDL+ L GY+ LI ELE +F+IKG+L+  N+W + FTD + D MLVGDDPWPEF
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF

Q9ZPY6 Auxin response factor 11

1.7e-19

69.84

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF
        MQG AVGRAVDLT L  Y++LI ELE +FEI+GEL   +KW++VFTDDE D MLVGDDPW EF
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF

Arabidopsis top hits

e value

%identity

Alignment

AT2G46530.1 auxin response factor 11

1.2e-20

69.84

Show/hide

Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF
        MQG AVGRAVDLT L  Y++LI ELE +FEI+GEL   +KW++VFTDDE D MLVGDDPW EF
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF

AT2G46530.2 auxin response factor 11

1.2e-20

69.84

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF
        MQG AVGRAVDLT L  Y++LI ELE +FEI+GEL   +KW++VFTDDE D MLVGDDPW EF
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF

AT3G61830.1 auxin response factor 18

1.9e-21

71.43

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF
        MQG+AVGRAVDLT L+ Y++LIDELE +FEI+G+L   +KW VVFTDDE DMML GDDPW EF
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF

AT4G23980.1 auxin response factor 9

1.6e-23

73.02

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF
        MQGV VGRAVDL  L+GY +LID++E +F+IKGELR  N+W +VFTDDE DMMLVGDDPWPEF
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF

AT4G23980.2 auxin response factor 9

1.6e-23

73.02

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Query:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF
        MQGV VGRAVDL  L+GY +LID++E +F+IKGELR  N+W +VFTDDE DMMLVGDDPWPEF
Subjt:  MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEF

Sequences

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CDS sequence

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ATGCAAGGAGTTGCAGTAGGTCGAGCAGTCGACTTGACTACACTTGAAGGGTACGAAGATCTGATCGACGAGCTGGAGAATGTGTTTGAAATAAAAGGAGAACTTCGTAA
AATGAACAAATGGTCTGTCGTTTTCACAGACGACGAAAACGACATGATGCTCGTGGGGGACGATCCATGGCCGGAGTTCTTTGTAGTAATCAGCAGTAGTGTGGTGCTGG
CAAGTGGTTTTGCTTGGTGCTTTTTTCTTCCTTTAATAGTTCATAGAATATGCTTAATATGTAAGCCAAGCAGAAGTGCTTCTTTTGTAGGGGAGGGGCCTTAA

mRNA sequence

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Protein sequence

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MQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRKMNKWSVVFTDDENDMMLVGDDPWPEFFVVISSSVVLASGFAWCFFLPLIVHRICLICKPSRSASFVGEGP

Lsi02G020360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome