CuGenDBv2

Gene ID	Lsi02G020730
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Thylakoid protein sll1769
Genome location	chr02:26916966..26920208
RNA-Seq Expression	Lsi02G020730
Synteny	Lsi02G020730
Gene Ontology terms	GO:0010027 - thylakoid membrane organization (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domains	IPR040003 - Plastoglobular protein 18-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004139667.1 uncharacterized protein At4g13200, chloroplastic [Cucumis sativus]

5.6e-68

81.62

Show/hide

Query:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSSG+TSSVSQSPFSLV TKPKITHYS PSLL FRSSSTPSNLKFRGISHF+PNG  RF+ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVL 
Subjt:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSST-----IEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGD
        GIGRLQAEQQKQI DFQ+EVIERAKKAK+KAARD+KEVQGPVSS+     IEV SSPT+S+        D+DSE+VVNQDP LG+
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSST-----IEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGD

XP_008447268.1 PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis melo]

2.5e-68

81.62

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Query:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSS ITSSVS SPFSLVPTKPKITHYSSPSLLPFRSSSTPSNL+FRGISHF+PNGS R +ARCSSGDGDSRT+LDAFFLGKALAEALTERIESTIGEVL 
Subjt:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGD
        GIG+LQAEQQKQI DFQ+EVIERAKKAK+KAAR+AKEVQ PVSS     TIEV+SSPT+S+        D+DSE+ VNQDPPLGD
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGD

XP_022953678.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita moschata]

1.2e-59

73.66

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Query:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSSG+ SSVS S FS+VPTK KITH SSPSL+ FRSSST SNLK      FRPNGS RF+A CSSGDGD+RTVLDAFF+GKA AE LTER+EST+GEVLG
Subjt:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGDE
         IGRLQAE+Q+QI+DFQEEVI+RAKKAK+KA RDAKE QGP+SS     TIEVTSSPTAS+N  Q S+ ++ SETVVNQDPP GDE
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGDE

XP_022991713.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita maxima]

4.7e-59

73.12

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Query:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSSG+ SSVS S FS++PT+ KITH SSPSL+ FRSSST SNLK      FRPNGS RF+A CSSGDGD+RTVLDAFFLGKA AE LTER+EST+GEVL 
Subjt:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGDE
         IGRLQAE+Q+QI+DFQEEVIERAKKAK+KA RDAKE QGP+SS     TIEVTSSPT S+N  Q S+L++ SETVVNQDPP GDE
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGDE

XP_038900031.1 uncharacterized protein At4g13200, chloroplastic [Benincasa hispida]

2.0e-78

89.25

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Query:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSSG+TSSVSQSPFSLVPTKPKITHYSS SLL FRSSSTPSNLKFR ISHF+PNGSPRF+ARCSSGDGDSRTVLDAFFLGKALAEALTERIEST+GEVL 
Subjt:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGDE
        GIGRLQAEQQKQI DFQEEVIERAKKAKDKAARDAKEVQGPVSS     TIEVTSSPT STN+ QLSN D DSETVVNQDPPLGD+
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGDE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6Q2 Uncharacterized protein

2.7e-68

81.62

Show/hide

Query:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSSG+TSSVSQSPFSLV TKPKITHYS PSLL FRSSSTPSNLKFRGISHF+PNG  RF+ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVL 
Subjt:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSST-----IEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGD
        GIGRLQAEQQKQI DFQ+EVIERAKKAK+KAARD+KEVQGPVSS+     IEV SSPT+S+        D+DSE+VVNQDP LG+
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSST-----IEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGD

A0A1S3BHX5 uncharacterized protein At4g13200, chloroplastic isoform X1

1.2e-68

81.62

Show/hide

Query:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSS ITSSVS SPFSLVPTKPKITHYSSPSLLPFRSSSTPSNL+FRGISHF+PNGS R +ARCSSGDGDSRT+LDAFFLGKALAEALTERIESTIGEVL 
Subjt:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGD
        GIG+LQAEQQKQI DFQ+EVIERAKKAK+KAAR+AKEVQ PVSS     TIEV+SSPT+S+        D+DSE+ VNQDPPLGD
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGD

A0A6J1GNZ1 uncharacterized protein At4g13200, chloroplastic-like

6.0e-60

73.66

Show/hide

Query:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSSG+ SSVS S FS+VPTK KITH SSPSL+ FRSSST SNLK      FRPNGS RF+A CSSGDGD+RTVLDAFF+GKA AE LTER+EST+GEVLG
Subjt:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGDE
         IGRLQAE+Q+QI+DFQEEVI+RAKKAK+KA RDAKE QGP+SS     TIEVTSSPTAS+N  Q S+ ++ SETVVNQDPP GDE
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGDE

A0A6J1JX27 uncharacterized protein At4g13200, chloroplastic-like

2.3e-59

73.12

Show/hide

Query:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSSG+ SSVS S FS++PT+ KITH SSPSL+ FRSSST SNLK      FRPNGS RF+A CSSGDGD+RTVLDAFFLGKA AE LTER+EST+GEVL 
Subjt:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGDE
         IGRLQAE+Q+QI+DFQEEVIERAKKAK+KA RDAKE QGP+SS     TIEVTSSPT S+N  Q S+L++ SETVVNQDPP GDE
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGDE

A0A6J1KY61 uncharacterized protein At4g13200, chloroplastic-like

3.7e-57

73.4

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Query:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        M+SG+T SVS S FS++ +KPKITH SS           PSNLKFR IS   P GSPRFV RCSSGD DSRTVL+AFFLGKALAEALTER+ESTIGEVL 
Subjt:  MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-------TIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGDE
        GIGRLQAEQQKQILDFQEEVIERAKKA++KAARDAKEVQGP+SS       TIEV SS T STNQ QLSN  SDS T  NQDPPLGDE
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-------TIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGDE

SwissProt top hits

e value

%identity

Alignment

P73628 Thylakoid protein sll1769

5.4e-05

38.89

Show/hide

Query:  VLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS
        VL AFFLG+A AE L+E++E  +   L  +G+  AEQ++ +  F  EV  RA     +       V GPVS+
Subjt:  VLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS

Q8LDV3 Uncharacterized protein At4g13200, chloroplastic

6.3e-22

54.13

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Query:  SGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-TIEVTSSPTASTNQLQLSN
        SG+ ++++VLDAFFLGKALAE + ERIEST+GEVL  IG+ QAEQQKQ+ + QEEV+ERAKKAK++AAR+  E QG V+S  + +T +P A       S 
Subjt:  SGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-TIEVTSSPTASTNQLQLSN

Query:  LDSDSETVV
           +S+T++
Subjt:  LDSDSETVV

Arabidopsis top hits

e value

%identity

Alignment

AT4G13200.1 unknown protein

4.5e-23

54.13

Show/hide

Query:  SGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-TIEVTSSPTASTNQLQLSN
        SG+ ++++VLDAFFLGKALAE + ERIEST+GEVL  IG+ QAEQQKQ+ + QEEV+ERAKKAK++AAR+  E QG V+S  + +T +P A       S 
Subjt:  SGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSS-TIEVTSSPTASTNQLQLSN

Query:  LDSDSETVV
           +S+T++
Subjt:  LDSDSETVV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAGTAGTGGGATTACATCTTCAGTTTCCCAATCCCCTTTCTCGCTTGTGCCCACTAAGCCAAAAATTACCCATTATTCATCTCCATCTCTCCTTCCATTTCGGTCCTC
TTCAACTCCTTCAAATCTCAAATTTCGAGGAATTTCACATTTTCGACCAAATGGGTCTCCCAGATTCGTAGCCCGTTGCAGCTCCGGTGATGGTGACAGCAGGACTGTTC
TAGATGCCTTTTTCTTAGGAAAAGCTTTGGCAGAAGCCTTAACTGAGCGAATCGAGTCAACAATTGGAGAGGTTTTGGGCGGGATTGGTAGGCTGCAAGCTGAACAACAA
AAACAAATTCTTGATTTCCAGGAGGAAGTGATAGAAAGAGCTAAAAAGGCCAAGGATAAAGCAGCACGTGATGCCAAAGAAGTACAAGGACCCGTATCCTCTACAATCGA
AGTTACTTCATCTCCAACCGCTTCGACCAATCAACTACAACTCTCGAATCTCGACTCAGATTCAGAAACTGTTGTGAATCAGGATCCTCCTCTTGGTGACGAATAA

mRNA sequence

Show/hide mRNA sequence

AATTTTTTGAGTTAAAACTTTCCATTTAGTTAGGGTGCCAAATTCTAATCCATGAAAGTGGCAATTGGGTAAGCCGAACGAGGAATGAGCAAAAACAGGGATGGTTCTGA
GTTCCTGTCATCATACAGCTCAAGCCCACAAAGTACAATTTTTCATTTTTTTTCTCACACCCCACCAAAGATCTTTCTTTTATAAATTCCTGTTTGGCTGTCAAGAAAAC
GAGCGAGAAAATCTGAGAAAGTGACGCCGTGTAATCTTCCAGTCCATCGCACAAAATGAGTAGTGGGATTACATCTTCAGTTTCCCAATCCCCTTTCTCGCTTGTGCCCA
CTAAGCCAAAAATTACCCATTATTCATCTCCATCTCTCCTTCCATTTCGGTCCTCTTCAACTCCTTCAAATCTCAAATTTCGAGGAATTTCACATTTTCGACCAAATGGG
TCTCCCAGATTCGTAGCCCGTTGCAGCTCCGGTGATGGTGACAGCAGGACTGTTCTAGATGCCTTTTTCTTAGGAAAAGCTTTGGCAGAAGCCTTAACTGAGCGAATCGA
GTCAACAATTGGAGAGGTTTTGGGCGGGATTGGTAGGCTGCAAGCTGAACAACAAAAACAAATTCTTGATTTCCAGGAGGAAGTGATAGAAAGAGCTAAAAAGGCCAAGG
ATAAAGCAGCACGTGATGCCAAAGAAGTACAAGGACCCGTATCCTCTACAATCGAAGTTACTTCATCTCCAACCGCTTCGACCAATCAACTACAACTCTCGAATCTCGAC
TCAGATTCAGAAACTGTTGTGAATCAGGATCCTCCTCTTGGTGACGAATAACCGAACAGCCCGCCCAGA

Protein sequence

Show/hide protein sequence

MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQ
KQILDFQEEVIERAKKAKDKAARDAKEVQGPVSSTIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGDE

Lsi02G020730 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome