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Lsi02G020810 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G020810
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionE3 ubiquitin-protein ligase PRT1
Genome locationchr02:27001870..27003012
RNA-Seq ExpressionLsi02G020810
SyntenyLsi02G020810
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process (biological process)
GO:0008270 - zinc ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR000433 - Zinc finger, ZZ-type
IPR043145 - Zinc finger, ZZ-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026291.1 E3 ubiquitin-protein ligase PRT1 isoform X1 [Cucumis melo var. makuwa]2.5e-5483.72Show/hide
Query:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTEMLEEGSTTFIIANDQVSDSSDDIGAILEFSSDARE
        M+P+IGDRYKCKDC EEVGFDLCGDCYNTRSKRPGRFNQQHRPEH+F LV P M +NMRLG++TEMLEEGSTTFIIAN + SDSSD+IGAILEFSSDARE
Subjt:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTEMLEEGSTTFIIANDQVSDSSDDIGAILEFSSDARE

Query:  SDEEDSDVDGRTQTNSNDNRTDQNYSQPT
        SDE+DSDVDGRTQ NS+D+RTDQNYS+P+
Subjt:  SDEEDSDVDGRTQTNSNDNRTDQNYSQPT

XP_008457982.1 PREDICTED: E3 ubiquitin-protein ligase PRT1 isoform X1 [Cucumis melo]2.5e-5483.72Show/hide
Query:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTEMLEEGSTTFIIANDQVSDSSDDIGAILEFSSDARE
        M+P+IGDRYKCKDC EEVGFDLCGDCYNTRSKRPGRFNQQHRPEH+F LV P M +NMRLG++TEMLEEGSTTFIIAN + SDSSD+IGAILEFSSDARE
Subjt:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTEMLEEGSTTFIIANDQVSDSSDDIGAILEFSSDARE

Query:  SDEEDSDVDGRTQTNSNDNRTDQNYSQPT
        SDE+DSDVDGRTQ NS+D+RTDQNYS+P+
Subjt:  SDEEDSDVDGRTQTNSNDNRTDQNYSQPT

XP_022960374.1 E3 ubiquitin-protein ligase PRT1 [Cucurbita moschata]1.1e-4981.54Show/hide
Query:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTE-MLEEGSTTFIIANDQVSDSSDDIGAILEFSSDAR
        MYPIIGDRYKC+DCFEEVGFDLCG+CYNTRSKRPGRFNQQHRPEHKF+LV P M   MR  I+TE MLEEGSTTFIIAND+ S+SS+DIGAILE SSDAR
Subjt:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTE-MLEEGSTTFIIANDQVSDSSDDIGAILEFSSDAR

Query:  ESDEEDSDVDGRTQTNSNDNRTDQNYSQPT
        ES+E++SDVD RTQTNSND+RTDQN S+PT
Subjt:  ESDEEDSDVDGRTQTNSNDNRTDQNYSQPT

XP_038877741.1 E3 ubiquitin-protein ligase PRT1 isoform X1 [Benincasa hispida]1.2e-5689.6Show/hide
Query:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTEMLEEGSTTFIIANDQVSDSSDDIGAILEFSSDARE
        MYPIIGDRYKCKDC EE+GFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQM  NMRLG++TEMLEEG+TTFII ND+ SDSSDDIGAILE SSDARE
Subjt:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTEMLEEGSTTFIIANDQVSDSSDDIGAILEFSSDARE

Query:  SDEEDSDVDGRTQTNSNDNRTDQNY
        SDE+DSDVDGRTQTNSNDNR DQNY
Subjt:  SDEEDSDVDGRTQTNSNDNRTDQNY

XP_038877742.1 E3 ubiquitin-protein ligase PRT1 isoform X2 [Benincasa hispida]1.2e-5689.6Show/hide
Query:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTEMLEEGSTTFIIANDQVSDSSDDIGAILEFSSDARE
        MYPIIGDRYKCKDC EE+GFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQM  NMRLG++TEMLEEG+TTFII ND+ SDSSDDIGAILE SSDARE
Subjt:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTEMLEEGSTTFIIANDQVSDSSDDIGAILEFSSDARE

Query:  SDEEDSDVDGRTQTNSNDNRTDQNY
        SDE+DSDVDGRTQTNSNDNR DQNY
Subjt:  SDEEDSDVDGRTQTNSNDNRTDQNY

TrEMBL top hitse value%identityAlignment
A0A1S3C815 E3 ubiquitin-protein ligase PRT1 isoform X11.2e-5483.72Show/hide
Query:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTEMLEEGSTTFIIANDQVSDSSDDIGAILEFSSDARE
        M+P+IGDRYKCKDC EEVGFDLCGDCYNTRSKRPGRFNQQHRPEH+F LV P M +NMRLG++TEMLEEGSTTFIIAN + SDSSD+IGAILEFSSDARE
Subjt:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTEMLEEGSTTFIIANDQVSDSSDDIGAILEFSSDARE

Query:  SDEEDSDVDGRTQTNSNDNRTDQNYSQPT
        SDE+DSDVDGRTQ NS+D+RTDQNYS+P+
Subjt:  SDEEDSDVDGRTQTNSNDNRTDQNYSQPT

A0A5A7SQ14 E3 ubiquitin-protein ligase PRT1 isoform X11.2e-5483.72Show/hide
Query:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTEMLEEGSTTFIIANDQVSDSSDDIGAILEFSSDARE
        M+P+IGDRYKCKDC EEVGFDLCGDCYNTRSKRPGRFNQQHRPEH+F LV P M +NMRLG++TEMLEEGSTTFIIAN + SDSSD+IGAILEFSSDARE
Subjt:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTEMLEEGSTTFIIANDQVSDSSDDIGAILEFSSDARE

Query:  SDEEDSDVDGRTQTNSNDNRTDQNYSQPT
        SDE+DSDVDGRTQ NS+D+RTDQNYS+P+
Subjt:  SDEEDSDVDGRTQTNSNDNRTDQNYSQPT

A0A6J1D209 E3 ubiquitin-protein ligase PRT1 isoform X32.4e-3462.6Show/hide
Query:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQ--MCQNMRLGIMTEMLEEGSTTFIIANDQVSDSSDDIGAILEFSSDA
        M PI+GDRYKCKDC+E++GFDLCGDCYNT SKRPGRFNQQHRPEH F+L+ P   M  N+ L ++T MLEEG       ND  S++S+D+G +L+ SSDA
Subjt:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQ--MCQNMRLGIMTEMLEEGSTTFIIANDQVSDSSDDIGAILEFSSDA

Query:  RESDEEDSDVDGRTQTNSNDNRTDQNYSQPT
         E+DE DS  D RT+ NSNDNRTDQ  S PT
Subjt:  RESDEEDSDVDGRTQTNSNDNRTDQNYSQPT

A0A6J1HAU1 E3 ubiquitin-protein ligase PRT15.4e-5081.54Show/hide
Query:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTE-MLEEGSTTFIIANDQVSDSSDDIGAILEFSSDAR
        MYPIIGDRYKC+DCFEEVGFDLCG+CYNTRSKRPGRFNQQHRPEHKF+LV P M   MR  I+TE MLEEGSTTFIIAND+ S+SS+DIGAILE SSDAR
Subjt:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTE-MLEEGSTTFIIANDQVSDSSDDIGAILEFSSDAR

Query:  ESDEEDSDVDGRTQTNSNDNRTDQNYSQPT
        ES+E++SDVD RTQTNSND+RTDQN S+PT
Subjt:  ESDEEDSDVDGRTQTNSNDNRTDQNYSQPT

A0A6J1KS10 E3 ubiquitin-protein ligase PRT12.0e-4980.77Show/hide
Query:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTE-MLEEGSTTFIIANDQVSDSSDDIGAILEFSSDAR
        MYPIIGDRYKC+DCFEEVGFDLCG+CYNTRSKRPGRFNQQHRPEHKF+LV P M   MR  I+TE MLEEGSTTFIIAND+ S+SS+D+GAILE SSDAR
Subjt:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTE-MLEEGSTTFIIANDQVSDSSDDIGAILEFSSDAR

Query:  ESDEEDSDVDGRTQTNSNDNRTDQNYSQPT
        ES+E DSDVD RTQTNSND+RTD+N S+PT
Subjt:  ESDEEDSDVDGRTQTNSNDNRTDQNYSQPT

SwissProt top hitse value%identityAlignment
Q8LBL5 E3 ubiquitin-protein ligase PRT15.2e-1863.08Show/hide
Query:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVR-PQMCQNMR-LGIM
        +YPIIGDRY+CKDC EE+G+DLC DCY T SK PGRFNQQH P+H+ +L R PQ+  N   +GI+
Subjt:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVR-PQMCQNMR-LGIM

Arabidopsis top hitse value%identityAlignment
AT3G24800.1 proteolysis 13.7e-1963.08Show/hide
Query:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVR-PQMCQNMR-LGIM
        +YPIIGDRY+CKDC EE+G+DLC DCY T SK PGRFNQQH P+H+ +L R PQ+  N   +GI+
Subjt:  MYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVR-PQMCQNMR-LGIM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAATGTATCCCATCATTGGCGATAGATACAAGTGCAAGGATTGTTTTGAGGAAGTAGGTTTTGACCTCTGTGGTGACTGCTACAATACGCGTTCAAAGCGTCCCGG
TCGGTTCAACCAGCAACATAGACCAGAGCACAAGTTTCAGCTTGTACGTCCTCAAATGTGTCAAAATATGAGGTTGGGGATTATGACAGAAATGTTAGAGGAAGGTTCTA
CAACCTTTATTATTGCTAATGATCAAGTTTCGGATAGCTCGGATGACATAGGTGCTATTCTTGAATTTTCTAGCGATGCTCGTGAGAGTGATGAGGAAGATTCTGATGTT
GATGGTAGAACTCAGACAAACTCCAATGACAATAGAACGGATCAAAATTACTCTCAACCTACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAATGTATCCCATCATTGGCGATAGATACAAGTGCAAGGATTGTTTTGAGGAAGTAGGTTTTGACCTCTGTGGTGACTGCTACAATACGCGTTCAAAGCGTCCCGG
TCGGTTCAACCAGCAACATAGACCAGAGCACAAGTTTCAGCTTGTACGTCCTCAAATGTGTCAAAATATGAGGTTGGGGATTATGACAGAAATGTTAGAGGAAGGTTCTA
CAACCTTTATTATTGCTAATGATCAAGTTTCGGATAGCTCGGATGACATAGGTGCTATTCTTGAATTTTCTAGCGATGCTCGTGAGAGTGATGAGGAAGATTCTGATGTT
GATGGTAGAACTCAGACAAACTCCAATGACAATAGAACGGATCAAAATTACTCTCAACCTACTTAAAATGTTAAAATGTCTTGACTCGAAATACGACATTGTTTCGTACG
GAGTTTCCACTTGGGTTTTCGGAACACGATCTCTTTCTCTAGTGTATGGTTGATCCATAAACTGAAATTTCTATGTTTGTTCCCAGGCCAGATGAAAAAAGAGGCATAAA
AAACTTCAATCTATGTACAGAAATGGATCCCCTAATCTTCAAAATTCAGCTGATTCCTCTTCCACTTGAATATGTACAGACAGTGGAGAGGCACCTGAAGCTGGTTTCTT
GTTAAATAAAAACAGCCAACTTGTGGTATATGAGCTTTTATTTTAGTTTGTAGTGTTCTTGCACCAAGAGTTTTATCTCTCTCTATTGATGCACAGGTAACATAAATATT
TTACATGCTTTTAAAGTTATTATATATTCAGCTGATTAATTGATTGTGTTCTTTGGATTAAAATTTCAATTTAGTTCCTAATATTATAATGTTTCAA
Protein sequenceShow/hide protein sequence
MQMYPIIGDRYKCKDCFEEVGFDLCGDCYNTRSKRPGRFNQQHRPEHKFQLVRPQMCQNMRLGIMTEMLEEGSTTFIIANDQVSDSSDDIGAILEFSSDARESDEEDSDV
DGRTQTNSNDNRTDQNYSQPT